Wall clock time and date at job start Sat Apr 11 2020 05:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 119.99707 * 2 1 4 4 H 1.48499 * 109.47139 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47582 * 300.00239 * 3 2 1 6 6 H 1.48509 * 109.47245 * 60.00378 * 3 2 1 7 7 C 1.38805 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00111 * 163.11518 * 7 2 1 9 9 N 1.36938 * 120.00279 * 343.10871 * 7 2 1 10 10 C 1.46928 * 120.62913 * 151.60586 * 9 7 2 11 11 C 1.53191 * 108.77484 * 126.67226 * 10 9 7 12 12 C 1.53036 * 109.31650 * 54.63051 * 11 10 9 13 13 N 1.46494 * 109.45205 * 178.62161 * 12 11 10 14 14 C 1.34776 * 120.00069 * 275.06523 * 13 12 11 15 15 O 1.21583 * 119.99962 * 0.02562 * 14 13 12 16 16 N 1.34774 * 119.99830 * 179.97438 * 14 13 12 17 17 C 1.47028 * 125.65191 * 0.02719 * 16 14 13 18 18 C 1.54322 * 107.26918 * 181.02300 * 17 16 14 19 19 C 1.55143 * 102.94934 * 22.19010 * 18 17 16 20 20 H 1.09001 * 111.00333 * 82.60901 * 19 18 17 21 21 C 1.52993 * 111.00944 * 206.42563 * 19 18 17 22 22 O 1.43752 * 109.63186 * 298.90721 * 21 19 18 23 23 C 1.44583 * 104.92409 * 215.71044 * 22 21 19 24 24 C 1.54916 * 101.63735 * 36.26534 * 23 22 21 25 25 O 1.43367 * 109.63636 * 179.69516 * 21 19 18 26 26 C 1.47426 * 125.64775 * 179.71435 * 16 14 13 27 27 C 1.53037 * 109.54089 * 298.63863 * 12 11 10 28 28 C 1.46921 * 120.63022 * 331.88876 * 9 7 2 29 29 H 0.96995 * 120.00418 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.58682 * 246.45809 * 10 9 7 31 31 H 1.08999 * 109.58927 * 6.88024 * 10 9 7 32 32 H 1.09003 * 109.49334 * 294.68424 * 11 10 9 33 33 H 1.09000 * 109.49949 * 174.59204 * 11 10 9 34 34 H 1.09006 * 109.45683 * 58.65811 * 12 11 10 35 35 H 0.96997 * 120.00197 * 95.06434 * 13 12 11 36 36 H 1.08996 * 109.87832 * 300.43576 * 17 16 14 37 37 H 1.08994 * 109.88076 * 61.44647 * 17 16 14 38 38 H 1.09003 * 110.71627 * 140.55843 * 18 17 16 39 39 H 1.09005 * 110.71791 * 263.64550 * 18 17 16 40 40 H 1.08998 * 109.63061 * 59.29971 * 21 19 18 41 41 H 1.09000 * 111.08593 * 278.15750 * 23 22 21 42 42 H 1.08995 * 110.95365 * 154.31603 * 23 22 21 43 43 H 1.08996 * 110.69768 * 205.96642 * 24 23 22 44 44 H 1.08995 * 110.69726 * 82.75277 * 24 23 22 45 45 H 1.08998 * 110.36922 * 274.75048 * 26 16 14 46 46 H 1.09002 * 110.37036 * 37.07495 * 26 16 14 47 47 H 1.08999 * 109.49917 * 301.41626 * 27 12 11 48 48 H 1.08993 * 109.49853 * 181.31007 * 27 12 11 49 49 H 1.09002 * 109.58682 * 353.12187 * 28 9 7 50 50 H 1.09004 * 109.58630 * 113.54294 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3966 -1.2125 6 1 1.8914 2.3965 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0554 -1.2222 -0.2722 9 7 1.3699 -2.3626 0.3435 10 6 1.8110 -3.6521 -0.2056 11 6 2.0606 -4.6221 0.9535 12 6 0.8040 -4.7059 1.8230 13 7 1.0281 -5.6579 2.9137 14 6 0.8216 -6.9744 2.7122 15 8 0.4498 -7.3721 1.6251 16 7 1.0282 -7.8501 3.7156 17 6 1.4762 -7.5076 5.0734 18 6 1.5968 -8.8281 5.8629 19 6 1.7552 -9.8896 4.7426 20 1 2.7899 -9.9501 4.4051 21 6 1.2525 -11.2576 5.2081 22 8 2.0238 -11.6963 6.3391 23 6 2.1394 -13.1284 6.1781 24 6 2.2667 -13.2606 4.6398 25 8 1.4057 -12.2128 4.1500 26 6 0.8363 -9.3097 3.6353 27 6 0.4923 -3.3260 2.4065 28 6 0.2249 -2.3413 1.2639 29 1 -0.4850 0.8400 0.0004 30 1 1.0372 -4.0549 -0.8590 31 1 2.7328 -3.5126 -0.7704 32 1 2.8957 -4.2629 1.5550 33 1 2.2955 -5.6099 0.5572 34 1 -0.0364 -5.0414 1.2151 35 1 1.3250 -5.3407 3.7809 36 1 2.4459 -7.0119 5.0298 37 1 0.7466 -6.8531 5.5504 38 1 2.4759 -8.8132 6.5072 39 1 0.6952 -9.0118 6.4473 40 1 0.2014 -11.1858 5.4873 41 1 1.2463 -13.6372 6.5408 42 1 3.0317 -13.5060 6.6773 43 1 1.9137 -14.2365 4.3065 44 1 3.2959 -13.0931 4.3226 45 1 -0.2049 -9.5667 3.8301 46 1 1.1425 -9.6793 2.6567 47 1 1.3422 -2.9790 2.9942 48 1 -0.3893 -3.3913 3.0442 49 1 0.1001 -1.3369 1.6686 50 1 -0.6784 -2.6372 0.7303 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350876606.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:46 Heat of formation + Delta-G solvation = -89.502606 kcal Electronic energy + Delta-G solvation = -30114.297536 eV Core-core repulsion = 25949.339721 eV Total energy + Delta-G solvation = -4164.957815 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.03166 -40.08784 -38.12484 -36.92515 -35.50505 -34.34051 -32.86584 -31.80906 -30.31606 -30.01659 -29.38290 -28.82740 -25.52405 -24.50619 -23.92959 -23.02709 -22.16988 -21.75505 -20.95804 -19.78006 -19.29214 -18.12958 -17.78087 -17.34718 -16.70200 -16.29152 -16.15578 -15.70741 -15.12752 -14.84569 -14.50223 -14.44117 -14.17665 -13.74140 -13.57868 -13.51170 -13.41302 -13.26753 -13.07749 -12.94394 -12.82911 -12.40288 -12.32035 -12.17256 -11.79235 -11.47384 -11.39760 -11.17175 -11.08932 -10.79875 -10.76626 -10.70736 -10.43829 -10.21976 -10.10650 -10.00076 -9.95162 -9.70812 -9.49337 -8.83719 -8.50109 -8.37031 -6.64932 -5.76811 -3.18939 2.60042 2.88720 3.37542 3.38378 3.46352 3.48747 3.49573 3.99373 4.06693 4.18079 4.32381 4.39893 4.46071 4.51822 4.53193 4.80086 4.88629 4.93609 5.01390 5.07438 5.18209 5.33966 5.37797 5.41369 5.44897 5.49261 5.55096 5.60689 5.67299 5.72255 5.86277 5.95291 6.09716 6.15631 6.34286 6.41399 6.52157 6.57000 6.64376 6.66312 6.85460 7.00115 7.03949 7.18754 7.36106 7.65289 7.82372 8.14164 8.47628 8.79672 9.23706 9.86999 10.44450 11.32083 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.035064 B = 0.001905 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.356154 B =14691.029205 C =14891.321327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.000 4.000 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.250 4.250 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.147 3.853 11 C -0.139 4.139 12 C 0.168 3.832 13 N -0.736 5.736 14 C 0.721 3.279 15 O -0.587 6.587 16 N -0.642 5.642 17 C 0.099 3.901 18 C -0.115 4.115 19 C -0.116 4.116 20 H 0.096 0.904 21 C 0.246 3.754 22 O -0.374 6.374 23 C 0.016 3.984 24 C 0.020 3.980 25 O -0.380 6.380 26 C 0.141 3.859 27 C -0.146 4.146 28 C 0.175 3.825 29 H 0.253 0.747 30 H 0.021 0.979 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.081 0.919 35 H 0.390 0.610 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.077 0.923 42 H 0.110 0.890 43 H 0.101 0.899 44 H 0.077 0.923 45 H 0.065 0.935 46 H 0.084 0.916 47 H 0.059 0.941 48 H 0.053 0.947 49 H 0.091 0.909 50 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.649 -25.689 17.046 31.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.198 4.198 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.379 4.379 8 H 0.084 0.916 9 N -0.316 5.316 10 C 0.021 3.979 11 C -0.179 4.179 12 C 0.065 3.935 13 N -0.389 5.389 14 C 0.423 3.577 15 O -0.464 6.464 16 N -0.382 5.382 17 C -0.025 4.025 18 C -0.153 4.153 19 C -0.135 4.135 20 H 0.114 0.886 21 C 0.150 3.850 22 O -0.295 6.295 23 C -0.060 4.060 24 C -0.057 4.057 25 O -0.301 6.301 26 C 0.018 3.982 27 C -0.186 4.186 28 C 0.048 3.952 29 H 0.063 0.937 30 H 0.039 0.961 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.224 0.776 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.106 0.894 39 H 0.098 0.902 40 H 0.107 0.893 41 H 0.095 0.905 42 H 0.128 0.872 43 H 0.119 0.881 44 H 0.095 0.905 45 H 0.084 0.916 46 H 0.102 0.898 47 H 0.077 0.923 48 H 0.072 0.928 49 H 0.109 0.891 50 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 3.239 -25.581 16.089 30.393 hybrid contribution 0.606 0.839 0.605 1.199 sum 3.845 -24.742 16.694 30.093 Atomic orbital electron populations 1.70037 1.05234 1.25376 1.54159 1.25062 0.95303 0.98426 1.01005 0.86227 0.79357 0.83981 0.77239 1.20284 1.21749 1.21609 1.19235 0.92572 0.84728 1.41397 0.91615 1.44116 1.35793 1.01741 1.49928 1.20882 0.97886 0.86493 0.92686 1.22389 0.97229 0.99489 0.98838 1.20924 0.98387 0.87373 0.86848 1.45548 1.72587 1.04716 1.16092 1.15503 0.78516 0.80901 0.82823 1.90926 1.53942 1.77995 1.23571 1.47571 1.72625 1.06946 1.11094 1.21994 0.99890 0.97700 0.82870 1.22516 1.03538 0.92517 0.96734 1.22802 1.01471 0.92740 0.96515 0.88606 1.24011 0.95378 0.88519 0.77082 1.89202 1.74851 1.20940 1.44457 1.24381 1.03585 0.82033 0.96041 1.24229 0.95968 0.92315 0.93166 1.88949 1.68683 1.34662 1.37767 1.21849 0.98335 0.78834 0.99231 1.22539 1.00448 0.94762 1.00808 1.20743 0.88926 0.97765 0.87738 0.93679 0.96141 0.92607 0.92502 0.92709 0.90065 0.77638 0.91486 0.91377 0.89432 0.90224 0.89319 0.90473 0.87209 0.88056 0.90463 0.91634 0.89768 0.92268 0.92793 0.89056 0.96059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.33 11.20 55.49 0.62 -25.71 16 2 C 0.00 0.01 4.92 -17.43 -0.09 -0.08 16 3 Si 0.90 21.74 29.59 -169.99 -5.03 16.71 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.25 -6.90 9.58 -15.06 -0.14 -7.05 16 8 H 0.07 1.79 7.89 -52.48 -0.41 1.38 16 9 N -0.59 -15.09 2.99 -172.32 -0.52 -15.61 16 10 C 0.15 3.28 6.52 -3.71 -0.02 3.26 16 11 C -0.14 -2.68 5.65 -26.61 -0.15 -2.83 16 12 C 0.17 3.10 2.41 -67.90 -0.16 2.94 16 13 N -0.74 -11.38 5.04 -58.64 -0.30 -11.67 16 14 C 0.72 11.96 8.45 -86.92 -0.73 11.23 16 15 O -0.59 -12.21 16.26 5.29 0.09 -12.13 16 16 N -0.64 -8.10 3.32 -176.09 -0.59 -8.68 16 17 C 0.10 0.87 6.15 -3.06 -0.02 0.85 16 18 C -0.12 -0.81 6.17 -24.90 -0.15 -0.97 16 19 C -0.12 -0.98 3.07 -88.36 -0.27 -1.25 16 20 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 21 C 0.25 1.91 3.47 37.15 0.13 2.04 16 22 O -0.37 -2.81 11.07 -59.05 -0.65 -3.46 16 23 C 0.02 0.07 7.95 38.17 0.30 0.38 16 24 C 0.02 0.10 8.07 38.17 0.31 0.41 16 25 O -0.38 -3.30 11.10 -59.05 -0.66 -3.96 16 26 C 0.14 1.57 6.27 -2.41 -0.02 1.56 16 27 C -0.15 -2.75 5.55 -26.61 -0.15 -2.89 16 28 C 0.17 4.18 5.29 -3.71 -0.02 4.16 16 29 H 0.25 7.10 8.31 -40.82 -0.34 6.77 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.08 1.69 7.58 -51.93 -0.39 1.30 16 35 H 0.39 4.98 7.59 -40.82 -0.31 4.67 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.50 8.04 -51.93 -0.42 0.08 16 40 H 0.09 0.62 8.09 -51.93 -0.42 0.20 16 41 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.11 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.07 0.70 8.00 -51.93 -0.42 0.28 16 46 H 0.08 1.09 8.03 -51.93 -0.42 0.68 16 47 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 48 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 49 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 50 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 392.92 15.07 5.92 5.92 Total: -1.00 -34.10 392.92 -10.86 -44.96 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -8.57 Total: 1.86 kcal Atomic # 6 Polarization: 12.95 SS G_CDS: -1.19 Total: 11.76 kcal Atomic # 7 Polarization: -60.89 SS G_CDS: -0.78 Total: -61.67 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -1.22 Total: -19.54 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.10 -10.86 -44.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350876606.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.542 kcal (2) G-P(sol) polarization free energy of solvation -34.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds