Wall clock time and date at job start Sat Apr 11 2020 05:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 119.99707 * 2 1 4 4 H 1.48499 * 109.47139 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47582 * 300.00239 * 3 2 1 6 6 H 1.48509 * 109.47245 * 60.00378 * 3 2 1 7 7 C 1.38805 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00111 * 163.11518 * 7 2 1 9 9 N 1.36938 * 120.00279 * 343.10871 * 7 2 1 10 10 C 1.46928 * 120.62913 * 151.60586 * 9 7 2 11 11 C 1.53191 * 108.77484 * 126.67226 * 10 9 7 12 12 C 1.53036 * 109.31650 * 54.63051 * 11 10 9 13 13 N 1.46494 * 109.45205 * 178.62161 * 12 11 10 14 14 C 1.34776 * 120.00069 * 275.06523 * 13 12 11 15 15 O 1.21583 * 119.99962 * 0.02562 * 14 13 12 16 16 N 1.34774 * 119.99830 * 179.97438 * 14 13 12 17 17 C 1.47028 * 125.65191 * 0.02719 * 16 14 13 18 18 C 1.54322 * 107.26918 * 181.02300 * 17 16 14 19 19 C 1.55143 * 102.94934 * 22.19010 * 18 17 16 20 20 H 1.09001 * 111.00333 * 82.60901 * 19 18 17 21 21 C 1.52993 * 111.00944 * 206.42563 * 19 18 17 22 22 O 1.43752 * 109.63186 * 298.90721 * 21 19 18 23 23 C 1.44583 * 104.92409 * 215.71044 * 22 21 19 24 24 C 1.54916 * 101.63735 * 36.26534 * 23 22 21 25 25 O 1.43367 * 109.63636 * 179.69516 * 21 19 18 26 26 C 1.47426 * 125.64775 * 179.71435 * 16 14 13 27 27 C 1.53037 * 109.54089 * 298.63863 * 12 11 10 28 28 C 1.46921 * 120.63022 * 331.88876 * 9 7 2 29 29 H 0.96995 * 120.00418 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.58682 * 246.45809 * 10 9 7 31 31 H 1.08999 * 109.58927 * 6.88024 * 10 9 7 32 32 H 1.09003 * 109.49334 * 294.68424 * 11 10 9 33 33 H 1.09000 * 109.49949 * 174.59204 * 11 10 9 34 34 H 1.09006 * 109.45683 * 58.65811 * 12 11 10 35 35 H 0.96997 * 120.00197 * 95.06434 * 13 12 11 36 36 H 1.08996 * 109.87832 * 300.43576 * 17 16 14 37 37 H 1.08994 * 109.88076 * 61.44647 * 17 16 14 38 38 H 1.09003 * 110.71627 * 140.55843 * 18 17 16 39 39 H 1.09005 * 110.71791 * 263.64550 * 18 17 16 40 40 H 1.08998 * 109.63061 * 59.29971 * 21 19 18 41 41 H 1.09000 * 111.08593 * 278.15750 * 23 22 21 42 42 H 1.08995 * 110.95365 * 154.31603 * 23 22 21 43 43 H 1.08996 * 110.69768 * 205.96642 * 24 23 22 44 44 H 1.08995 * 110.69726 * 82.75277 * 24 23 22 45 45 H 1.08998 * 110.36922 * 274.75048 * 26 16 14 46 46 H 1.09002 * 110.37036 * 37.07495 * 26 16 14 47 47 H 1.08999 * 109.49917 * 301.41626 * 27 12 11 48 48 H 1.08993 * 109.49853 * 181.31007 * 27 12 11 49 49 H 1.09002 * 109.58682 * 353.12187 * 28 9 7 50 50 H 1.09004 * 109.58630 * 113.54294 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3966 -1.2125 6 1 1.8914 2.3965 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0554 -1.2222 -0.2722 9 7 1.3699 -2.3626 0.3435 10 6 1.8110 -3.6521 -0.2056 11 6 2.0606 -4.6221 0.9535 12 6 0.8040 -4.7059 1.8230 13 7 1.0281 -5.6579 2.9137 14 6 0.8216 -6.9744 2.7122 15 8 0.4498 -7.3721 1.6251 16 7 1.0282 -7.8501 3.7156 17 6 1.4762 -7.5076 5.0734 18 6 1.5968 -8.8281 5.8629 19 6 1.7552 -9.8896 4.7426 20 1 2.7899 -9.9501 4.4051 21 6 1.2525 -11.2576 5.2081 22 8 2.0238 -11.6963 6.3391 23 6 2.1394 -13.1284 6.1781 24 6 2.2667 -13.2606 4.6398 25 8 1.4057 -12.2128 4.1500 26 6 0.8363 -9.3097 3.6353 27 6 0.4923 -3.3260 2.4065 28 6 0.2249 -2.3413 1.2639 29 1 -0.4850 0.8400 0.0004 30 1 1.0372 -4.0549 -0.8590 31 1 2.7328 -3.5126 -0.7704 32 1 2.8957 -4.2629 1.5550 33 1 2.2955 -5.6099 0.5572 34 1 -0.0364 -5.0414 1.2151 35 1 1.3250 -5.3407 3.7809 36 1 2.4459 -7.0119 5.0298 37 1 0.7466 -6.8531 5.5504 38 1 2.4759 -8.8132 6.5072 39 1 0.6952 -9.0118 6.4473 40 1 0.2014 -11.1858 5.4873 41 1 1.2463 -13.6372 6.5408 42 1 3.0317 -13.5060 6.6773 43 1 1.9137 -14.2365 4.3065 44 1 3.2959 -13.0931 4.3226 45 1 -0.2049 -9.5667 3.8301 46 1 1.1425 -9.6793 2.6567 47 1 1.3422 -2.9790 2.9942 48 1 -0.3893 -3.3913 3.0442 49 1 0.1001 -1.3369 1.6686 50 1 -0.6784 -2.6372 0.7303 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350876606.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:45 Heat of formation + Delta-G solvation = -112.802962 kcal Electronic energy + Delta-G solvation = -30115.307915 eV Core-core repulsion = 25949.339721 eV Total energy + Delta-G solvation = -4165.968195 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.71056 -41.13512 -39.43667 -38.29436 -36.03769 -35.99620 -34.18129 -33.24832 -31.75703 -31.15380 -30.76221 -29.62304 -27.07454 -25.73443 -24.44219 -24.00161 -23.76676 -23.28125 -21.66892 -21.17597 -20.77474 -19.31821 -18.61453 -18.33803 -17.90531 -17.31164 -16.96323 -16.74819 -16.61548 -16.03101 -15.90943 -15.39118 -15.31955 -15.17765 -14.82583 -14.72549 -14.42730 -14.37403 -14.09782 -14.02803 -13.82804 -13.78753 -13.46519 -13.19913 -13.02072 -12.78800 -12.62304 -12.50956 -12.27152 -12.23616 -12.17571 -11.99518 -11.87920 -11.79427 -11.56952 -11.41177 -11.23344 -11.17410 -10.64048 -10.56688 -10.16956 -9.53768 -8.71207 -7.87600 -5.33696 1.47332 1.49681 1.51321 1.60796 2.09746 2.40363 2.52190 2.88265 3.03689 3.28650 3.49287 3.60219 3.65918 3.73466 3.78644 3.89141 4.05050 4.05285 4.12747 4.21879 4.30797 4.33157 4.34345 4.45225 4.47558 4.63296 4.64213 4.65490 4.75367 4.78418 4.80962 4.84624 4.89570 4.94933 5.00354 5.05177 5.06601 5.15018 5.21385 5.26653 5.30342 5.46186 5.57854 5.64845 5.70264 6.01274 6.06278 6.39218 6.96550 7.14387 7.53547 7.83399 8.37085 9.19758 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.035064 B = 0.001905 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.356154 B =14691.029205 C =14891.321327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.970 3.030 4 H -0.266 1.266 5 H -0.294 1.294 6 H -0.287 1.287 7 C -0.262 4.262 8 H 0.068 0.932 9 N -0.608 5.608 10 C 0.145 3.855 11 C -0.123 4.123 12 C 0.181 3.819 13 N -0.723 5.723 14 C 0.716 3.284 15 O -0.636 6.636 16 N -0.639 5.639 17 C 0.092 3.908 18 C -0.104 4.104 19 C -0.106 4.106 20 H 0.087 0.913 21 C 0.247 3.753 22 O -0.387 6.387 23 C 0.015 3.985 24 C 0.012 3.988 25 O -0.406 6.406 26 C 0.138 3.862 27 C -0.126 4.126 28 C 0.179 3.821 29 H 0.251 0.749 30 H 0.006 0.994 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.408 0.592 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.131 0.869 43 H 0.119 0.881 44 H 0.078 0.922 45 H 0.070 0.930 46 H 0.057 0.943 47 H 0.071 0.929 48 H 0.077 0.923 49 H 0.065 0.935 50 H -0.006 1.006 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.031 -26.633 19.861 33.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.798 3.202 4 H -0.191 1.191 5 H -0.222 1.222 6 H -0.213 1.213 7 C -0.392 4.392 8 H 0.085 0.915 9 N -0.332 5.332 10 C 0.019 3.981 11 C -0.163 4.163 12 C 0.075 3.925 13 N -0.377 5.377 14 C 0.417 3.583 15 O -0.518 6.518 16 N -0.377 5.377 17 C -0.030 4.030 18 C -0.141 4.141 19 C -0.126 4.126 20 H 0.106 0.894 21 C 0.152 3.848 22 O -0.307 6.307 23 C -0.061 4.061 24 C -0.064 4.064 25 O -0.328 6.328 26 C 0.015 3.985 27 C -0.166 4.166 28 C 0.053 3.947 29 H 0.060 0.940 30 H 0.024 0.976 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.244 0.756 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.122 0.878 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.108 0.892 42 H 0.149 0.851 43 H 0.137 0.863 44 H 0.096 0.904 45 H 0.089 0.911 46 H 0.076 0.924 47 H 0.090 0.910 48 H 0.095 0.905 49 H 0.084 0.916 50 H 0.012 0.988 Dipole moment (debyes) X Y Z Total from point charges 4.657 -26.569 18.980 32.982 hybrid contribution 0.174 1.008 -0.305 1.067 sum 4.832 -25.561 18.675 32.023 Atomic orbital electron populations 1.70193 1.06704 1.25915 1.55388 1.25843 0.96080 1.01591 1.01108 0.85168 0.78583 0.79634 0.76789 1.19076 1.22155 1.21337 1.19553 0.92857 0.85750 1.41056 0.91460 1.44368 1.35927 1.02217 1.50678 1.20956 0.97374 0.85992 0.93783 1.22178 0.97892 0.98400 0.97853 1.20523 0.96972 0.87655 0.87303 1.45129 1.72522 1.04030 1.16032 1.15644 0.78344 0.81329 0.82942 1.90894 1.56109 1.78835 1.25961 1.47579 1.71320 1.07008 1.11801 1.22304 1.00749 0.99140 0.80808 1.22514 1.04953 0.90597 0.96082 1.22681 1.00144 0.93773 0.95991 0.89448 1.23970 0.95750 0.87918 0.77174 1.89171 1.74841 1.22663 1.44040 1.24599 1.05253 0.80680 0.95529 1.24459 0.95691 0.92320 0.93918 1.88932 1.69429 1.35679 1.38746 1.21914 0.99338 0.78171 0.99110 1.22252 1.01987 0.93377 0.98968 1.20573 0.87704 0.97691 0.88752 0.93992 0.97596 0.92327 0.91495 0.92692 0.92758 0.75581 0.90443 0.89802 0.87832 0.88909 0.88565 0.89212 0.85105 0.86285 0.90387 0.91140 0.92416 0.90988 0.90495 0.91647 0.98759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.69 11.20 21.65 0.24 -55.45 16 2 C -0.05 -2.86 4.92 84.86 0.42 -2.44 16 3 Si 0.97 44.86 29.59 68.60 2.03 46.88 16 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 6 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 7 C -0.26 -14.57 9.58 84.03 0.81 -13.77 16 8 H 0.07 3.65 7.89 -2.91 -0.02 3.63 16 9 N -0.61 -31.39 2.99 -699.10 -2.09 -33.48 16 10 C 0.15 6.55 6.52 86.36 0.56 7.11 16 11 C -0.12 -4.67 5.65 30.67 0.17 -4.50 16 12 C 0.18 6.56 2.41 45.02 0.11 6.67 16 13 N -0.72 -21.22 5.04 -457.71 -2.31 -23.53 16 14 C 0.72 23.35 8.45 179.06 1.51 24.87 16 15 O -0.64 -27.05 16.26 -3.98 -0.06 -27.12 16 16 N -0.64 -15.32 3.32 -829.31 -2.76 -18.08 16 17 C 0.09 1.35 6.15 86.73 0.53 1.88 16 18 C -0.10 -1.15 6.17 31.78 0.20 -0.95 16 19 C -0.11 -1.64 3.07 -9.33 -0.03 -1.66 16 20 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 21 C 0.25 3.47 3.47 71.98 0.25 3.72 16 22 O -0.39 -4.90 11.07 -126.20 -1.40 -6.30 16 23 C 0.02 0.10 7.95 72.64 0.58 0.68 16 24 C 0.01 0.11 8.07 72.64 0.59 0.69 16 25 O -0.41 -6.74 11.10 -126.20 -1.40 -8.14 16 26 C 0.14 3.02 6.27 86.93 0.54 3.56 16 27 C -0.13 -4.63 5.55 30.67 0.17 -4.46 16 28 C 0.18 8.73 5.29 86.36 0.46 9.19 16 29 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 30 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.06 2.56 7.93 -2.39 -0.02 2.54 16 32 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.05 2.31 7.58 -2.38 -0.02 2.29 16 35 H 0.41 9.22 7.59 -92.71 -0.70 8.52 16 36 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.08 1.02 8.14 -2.39 -0.02 1.01 16 38 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.09 0.84 8.04 -2.38 -0.02 0.82 16 40 H 0.10 1.18 8.09 -2.39 -0.02 1.16 16 41 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 42 H 0.13 0.28 8.14 -2.39 -0.02 0.26 16 43 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.07 1.47 8.00 -2.39 -0.02 1.45 16 46 H 0.06 1.56 8.03 -2.39 -0.02 1.55 16 47 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 48 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 49 H 0.07 3.53 6.07 -2.39 -0.01 3.51 16 50 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 Total: -1.00 -75.71 392.92 -0.66 -76.36 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: 0.22 Total: 18.26 kcal Atomic # 6 Polarization: 23.72 SS G_CDS: 6.87 Total: 30.58 kcal Atomic # 7 Polarization: -123.62 SS G_CDS: -6.91 Total: -130.53 kcal Atomic # 8 Polarization: -38.70 SS G_CDS: -2.86 Total: -41.56 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Total: -75.71 -0.66 -76.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350876606.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.440 kcal (2) G-P(sol) polarization free energy of solvation -75.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds