Wall clock time and date at job start Sat Apr 11 2020 05:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86799 * 120.00130 * 2 1 4 4 H 1.48489 * 109.47406 * 179.97438 * 3 2 1 5 5 H 1.48509 * 109.46874 * 299.99942 * 3 2 1 6 6 H 1.48499 * 109.47144 * 59.99437 * 3 2 1 7 7 C 1.38814 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99652 * 163.07670 * 7 2 1 9 9 N 1.36938 * 120.00043 * 343.08763 * 7 2 1 10 10 C 1.46921 * 120.63017 * 151.83323 * 9 7 2 11 11 C 1.53195 * 108.77447 * 126.36882 * 10 9 7 12 12 C 1.53035 * 109.31714 * 54.63101 * 11 10 9 13 13 N 1.46494 * 109.46183 * 178.62762 * 12 11 10 14 14 C 1.34775 * 119.99980 * 205.02425 * 13 12 11 15 15 O 1.21581 * 120.00079 * 0.02562 * 14 13 12 16 16 N 1.34781 * 119.99903 * 179.97438 * 14 13 12 17 17 C 1.47019 * 125.64691 * 359.69517 * 16 14 13 18 18 C 1.54335 * 107.26541 * 178.85088 * 17 16 14 19 19 C 1.55158 * 103.01848 * 338.14020 * 18 17 16 20 20 H 1.09005 * 111.00626 * 277.22954 * 19 18 17 21 21 C 1.52996 * 111.03612 * 153.39921 * 19 18 17 22 22 O 1.43755 * 109.63117 * 305.23641 * 21 19 18 23 23 C 1.44589 * 104.92107 * 215.71177 * 22 21 19 24 24 C 1.54922 * 101.63513 * 36.26908 * 23 22 21 25 25 O 1.43378 * 109.63169 * 186.02503 * 21 19 18 26 26 C 1.47422 * 125.64636 * 180.02562 * 16 14 13 27 27 C 1.53043 * 109.52823 * 298.64561 * 12 11 10 28 28 C 1.46926 * 120.62731 * 331.80308 * 9 7 2 29 29 H 0.96996 * 119.99377 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.58667 * 6.57753 * 10 9 7 31 31 H 1.09006 * 109.70058 * 246.22350 * 10 9 7 32 32 H 1.08996 * 109.49316 * 294.67921 * 11 10 9 33 33 H 1.08997 * 109.52004 * 174.60147 * 11 10 9 34 34 H 1.09006 * 109.46117 * 58.65432 * 12 11 10 35 35 H 0.96997 * 120.00243 * 25.02920 * 13 12 11 36 36 H 1.09000 * 109.88564 * 298.39427 * 17 16 14 37 37 H 1.08999 * 109.88235 * 59.56188 * 17 16 14 38 38 H 1.09003 * 110.84925 * 219.67921 * 18 17 16 39 39 H 1.08999 * 110.51974 * 96.45198 * 18 17 16 40 40 H 1.09002 * 109.63305 * 65.62997 * 21 19 18 41 41 H 1.08999 * 111.08806 * 278.15925 * 23 22 21 42 42 H 1.08993 * 110.98128 * 154.33049 * 23 22 21 43 43 H 1.09000 * 110.69271 * 205.96231 * 24 23 22 44 44 H 1.08997 * 110.84103 * 82.82224 * 24 23 22 45 45 H 1.09001 * 110.37083 * 322.92950 * 26 16 14 46 46 H 1.09000 * 110.37034 * 85.14859 * 26 16 14 47 47 H 1.08998 * 109.50007 * 181.30693 * 27 12 11 48 48 H 1.09003 * 109.49438 * 301.40558 * 27 12 11 49 49 H 1.08997 * 109.59142 * 353.42466 * 28 9 7 50 50 H 1.09005 * 109.58436 * 113.70719 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0553 -1.2225 -0.2717 9 7 1.3701 -2.3623 0.3460 10 6 1.8141 -3.6529 -0.1979 11 6 2.0683 -4.6169 0.9653 12 6 0.8134 -4.7005 1.8371 13 7 1.0418 -5.6466 2.9320 14 6 -0.0026 -6.2692 3.5135 15 8 -1.1342 -6.0459 3.1292 16 7 0.2076 -7.1400 4.5205 17 6 1.5183 -7.5068 5.0765 18 6 1.2653 -8.5070 6.2244 19 6 -0.2084 -8.2222 6.6176 20 1 -0.2744 -7.3710 7.2953 21 6 -0.8618 -9.4612 7.2330 22 8 -0.7322 -10.5736 6.3317 23 6 -1.9586 -11.3235 6.4870 24 6 -2.9936 -10.1899 6.6962 25 8 -2.2560 -9.2105 7.4550 26 6 -0.8381 -7.8876 5.2422 27 6 0.4987 -3.3186 2.4146 28 6 0.2265 -2.3400 1.2682 29 1 -0.4849 0.8401 -0.0004 30 1 2.7345 -3.5133 -0.7647 31 1 1.0420 -4.0621 -0.8496 32 1 2.9034 -4.2527 1.5637 33 1 2.3056 -5.6059 0.5734 34 1 -0.0270 -5.0411 1.2322 35 1 1.9446 -5.8250 3.2385 36 1 2.1312 -7.9725 4.3048 37 1 2.0180 -6.6191 5.4642 38 1 1.9330 -8.3115 7.0635 39 1 1.3788 -9.5316 5.8703 40 1 -0.3771 -9.6987 8.1800 41 1 -1.9120 -11.9752 7.3595 42 1 -2.1829 -11.8955 5.5868 43 1 -3.8510 -10.5511 7.2640 44 1 -3.3133 -9.7754 5.7401 45 1 -1.7259 -7.2687 5.3719 46 1 -1.0894 -8.8025 4.7055 47 1 -0.3817 -3.3833 3.0540 48 1 1.3486 -2.9666 2.9994 49 1 0.0994 -1.3343 1.6687 50 1 -0.6772 -2.6386 0.7369 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350876607.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:49 Heat of formation + Delta-G solvation = -88.190876 kcal Electronic energy + Delta-G solvation = -30477.066712 eV Core-core repulsion = 26312.165778 eV Total energy + Delta-G solvation = -4164.900934 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.09835 -39.99167 -38.03449 -36.87909 -35.45077 -34.32208 -32.81055 -31.81439 -30.24365 -29.90816 -29.43398 -28.79212 -25.65407 -24.61629 -23.75133 -23.05021 -22.15774 -21.77555 -20.69720 -19.80273 -19.31130 -18.07294 -17.54343 -17.19396 -16.94250 -16.62180 -15.83060 -15.60906 -15.08211 -14.82064 -14.46685 -14.35768 -14.14195 -13.76386 -13.72937 -13.45620 -13.36224 -13.16294 -13.02221 -12.90181 -12.86341 -12.37410 -12.29307 -12.10693 -11.89587 -11.43404 -11.34292 -11.07995 -11.07060 -10.87159 -10.70945 -10.68966 -10.32725 -10.17649 -10.08497 -10.02034 -9.88618 -9.70746 -9.49287 -8.78897 -8.49167 -8.29912 -6.64007 -5.74560 -3.17672 2.70024 2.94106 3.39670 3.42122 3.47221 3.47478 3.49445 4.02213 4.10054 4.23733 4.29612 4.42537 4.49973 4.52612 4.66590 4.88627 4.91762 4.96854 5.07830 5.16175 5.28165 5.35446 5.36687 5.39315 5.44806 5.51437 5.52468 5.68477 5.71360 5.74263 5.89939 5.90708 6.13858 6.17010 6.29813 6.44794 6.52722 6.57618 6.67676 6.70782 6.84834 6.97798 7.03959 7.21570 7.45025 7.74199 7.83715 8.17324 8.49265 8.83716 9.25031 9.88452 10.45500 11.33942 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027640 B = 0.002083 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.777856 B =13437.515084 C =13639.507605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.253 4.253 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.149 3.851 11 C -0.138 4.138 12 C 0.168 3.832 13 N -0.737 5.737 14 C 0.720 3.280 15 O -0.586 6.586 16 N -0.642 5.642 17 C 0.102 3.898 18 C -0.119 4.119 19 C -0.119 4.119 20 H 0.103 0.897 21 C 0.245 3.755 22 O -0.373 6.373 23 C 0.017 3.983 24 C 0.019 3.981 25 O -0.381 6.381 26 C 0.140 3.860 27 C -0.146 4.146 28 C 0.174 3.826 29 H 0.253 0.747 30 H 0.058 0.942 31 H 0.020 0.980 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.081 0.919 35 H 0.389 0.611 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.076 0.924 42 H 0.110 0.890 43 H 0.101 0.899 44 H 0.080 0.920 45 H 0.078 0.922 46 H 0.067 0.933 47 H 0.053 0.947 48 H 0.053 0.947 49 H 0.088 0.912 50 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.444 -24.613 16.703 29.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.382 4.382 8 H 0.084 0.916 9 N -0.316 5.316 10 C 0.022 3.978 11 C -0.178 4.178 12 C 0.065 3.935 13 N -0.390 5.390 14 C 0.422 3.578 15 O -0.464 6.464 16 N -0.381 5.381 17 C -0.022 4.022 18 C -0.157 4.157 19 C -0.138 4.138 20 H 0.121 0.879 21 C 0.150 3.850 22 O -0.293 6.293 23 C -0.060 4.060 24 C -0.057 4.057 25 O -0.302 6.302 26 C 0.017 3.983 27 C -0.186 4.186 28 C 0.047 3.953 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.038 0.962 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.222 0.778 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.102 0.898 39 H 0.105 0.895 40 H 0.108 0.892 41 H 0.095 0.905 42 H 0.128 0.872 43 H 0.119 0.881 44 H 0.098 0.902 45 H 0.096 0.904 46 H 0.085 0.915 47 H 0.072 0.928 48 H 0.072 0.928 49 H 0.107 0.893 50 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -0.414 -24.085 16.280 29.074 hybrid contribution 0.797 0.636 0.276 1.056 sum 0.383 -23.449 16.556 28.707 Atomic orbital electron populations 1.70053 1.05257 1.25393 1.53799 1.25078 0.95290 0.98453 1.00925 0.86233 0.79307 0.84023 0.77250 1.20287 1.21748 1.21596 1.19209 0.92518 0.84780 1.41714 0.91633 1.44116 1.35937 1.01521 1.49998 1.20832 0.97971 0.86731 0.92288 1.22338 0.96763 0.99648 0.99044 1.20913 0.98536 0.88081 0.86011 1.45519 1.07679 1.46847 1.38987 1.15503 0.85176 0.78255 0.78858 1.90929 1.21631 1.68029 1.65779 1.47569 1.07733 1.45849 1.36987 1.21945 0.86129 0.98199 0.95909 1.22580 0.94967 1.00294 0.97860 1.22892 0.95735 0.97451 0.97737 0.87890 1.23898 0.83044 0.85907 0.92160 1.89205 1.38334 1.38025 1.63743 1.24369 0.82758 0.95166 1.03677 1.24248 0.95820 0.88012 0.97664 1.88921 1.16786 1.55090 1.69392 1.21865 0.91117 0.95831 0.89515 1.22566 1.00418 0.95255 1.00407 1.20754 0.88655 0.98076 0.87782 0.93653 0.92368 0.96177 0.91956 0.92706 0.90106 0.77762 0.91535 0.91597 0.89797 0.89467 0.89185 0.90534 0.87191 0.88113 0.90203 0.90362 0.91506 0.92849 0.92847 0.89334 0.96099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.77 11.20 55.49 0.62 -26.15 16 2 C 0.00 0.03 4.92 -17.43 -0.09 -0.05 16 3 Si 0.90 21.94 29.59 -169.99 -5.03 16.91 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.25 -7.00 9.58 -15.06 -0.14 -7.14 16 8 H 0.07 1.77 7.89 -52.49 -0.41 1.36 16 9 N -0.59 -15.14 2.99 -172.34 -0.52 -15.66 16 10 C 0.15 3.15 6.52 -3.71 -0.02 3.12 16 11 C -0.14 -2.39 5.55 -26.61 -0.15 -2.53 16 12 C 0.17 3.13 2.42 -67.89 -0.16 2.96 16 13 N -0.74 -11.54 5.04 -58.64 -0.30 -11.84 16 14 C 0.72 12.33 8.45 -86.92 -0.73 11.60 16 15 O -0.59 -12.61 16.26 5.29 0.09 -12.52 16 16 N -0.64 -8.43 3.33 -176.22 -0.59 -9.02 16 17 C 0.10 0.92 6.15 -3.06 -0.02 0.90 16 18 C -0.12 -0.84 6.36 -24.89 -0.16 -1.00 16 19 C -0.12 -1.01 3.23 -88.46 -0.29 -1.30 16 20 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 21 C 0.25 1.89 3.83 37.16 0.14 2.03 16 22 O -0.37 -2.95 9.47 -59.05 -0.56 -3.51 16 23 C 0.02 0.09 7.95 38.17 0.30 0.39 16 24 C 0.02 0.12 8.07 38.17 0.31 0.42 16 25 O -0.38 -3.37 10.97 -59.05 -0.65 -4.02 16 26 C 0.14 1.66 6.09 -2.52 -0.02 1.64 16 27 C -0.15 -3.07 5.65 -26.62 -0.15 -3.22 16 28 C 0.17 4.37 5.30 -3.73 -0.02 4.35 16 29 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 30 H 0.06 1.18 7.93 -51.93 -0.41 0.76 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.08 1.69 7.58 -51.93 -0.39 1.30 16 35 H 0.39 4.96 7.59 -40.82 -0.31 4.65 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.09 0.63 7.23 -51.93 -0.38 0.26 16 40 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.11 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.08 1.08 8.04 -51.93 -0.42 0.66 16 46 H 0.07 0.81 7.31 -51.93 -0.38 0.43 16 47 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 48 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 49 H 0.09 2.47 6.06 -51.93 -0.31 2.16 16 50 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 390.28 15.07 5.88 5.88 Total: -1.00 -34.70 390.28 -10.73 -45.44 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -8.49 Total: 2.32 kcal Atomic # 6 Polarization: 13.36 SS G_CDS: -1.19 Total: 12.17 kcal Atomic # 7 Polarization: -61.89 SS G_CDS: -0.78 Total: -62.67 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -1.12 Total: -20.05 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.70 -10.73 -45.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350876607.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.755 kcal (2) G-P(sol) polarization free energy of solvation -34.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds