Wall clock time and date at job start Sat Apr 11 2020 05:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86799 * 120.00130 * 2 1 4 4 H 1.48489 * 109.47406 * 179.97438 * 3 2 1 5 5 H 1.48509 * 109.46874 * 299.99942 * 3 2 1 6 6 H 1.48499 * 109.47144 * 59.99437 * 3 2 1 7 7 C 1.38814 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99652 * 163.07670 * 7 2 1 9 9 N 1.36938 * 120.00043 * 343.08763 * 7 2 1 10 10 C 1.46921 * 120.63017 * 151.83323 * 9 7 2 11 11 C 1.53195 * 108.77447 * 126.36882 * 10 9 7 12 12 C 1.53035 * 109.31714 * 54.63101 * 11 10 9 13 13 N 1.46494 * 109.46183 * 178.62762 * 12 11 10 14 14 C 1.34775 * 119.99980 * 205.02425 * 13 12 11 15 15 O 1.21581 * 120.00079 * 0.02562 * 14 13 12 16 16 N 1.34781 * 119.99903 * 179.97438 * 14 13 12 17 17 C 1.47019 * 125.64691 * 359.69517 * 16 14 13 18 18 C 1.54335 * 107.26541 * 178.85088 * 17 16 14 19 19 C 1.55158 * 103.01848 * 338.14020 * 18 17 16 20 20 H 1.09005 * 111.00626 * 277.22954 * 19 18 17 21 21 C 1.52996 * 111.03612 * 153.39921 * 19 18 17 22 22 O 1.43755 * 109.63117 * 305.23641 * 21 19 18 23 23 C 1.44589 * 104.92107 * 215.71177 * 22 21 19 24 24 C 1.54922 * 101.63513 * 36.26908 * 23 22 21 25 25 O 1.43378 * 109.63169 * 186.02503 * 21 19 18 26 26 C 1.47422 * 125.64636 * 180.02562 * 16 14 13 27 27 C 1.53043 * 109.52823 * 298.64561 * 12 11 10 28 28 C 1.46926 * 120.62731 * 331.80308 * 9 7 2 29 29 H 0.96996 * 119.99377 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.58667 * 6.57753 * 10 9 7 31 31 H 1.09006 * 109.70058 * 246.22350 * 10 9 7 32 32 H 1.08996 * 109.49316 * 294.67921 * 11 10 9 33 33 H 1.08997 * 109.52004 * 174.60147 * 11 10 9 34 34 H 1.09006 * 109.46117 * 58.65432 * 12 11 10 35 35 H 0.96997 * 120.00243 * 25.02920 * 13 12 11 36 36 H 1.09000 * 109.88564 * 298.39427 * 17 16 14 37 37 H 1.08999 * 109.88235 * 59.56188 * 17 16 14 38 38 H 1.09003 * 110.84925 * 219.67921 * 18 17 16 39 39 H 1.08999 * 110.51974 * 96.45198 * 18 17 16 40 40 H 1.09002 * 109.63305 * 65.62997 * 21 19 18 41 41 H 1.08999 * 111.08806 * 278.15925 * 23 22 21 42 42 H 1.08993 * 110.98128 * 154.33049 * 23 22 21 43 43 H 1.09000 * 110.69271 * 205.96231 * 24 23 22 44 44 H 1.08997 * 110.84103 * 82.82224 * 24 23 22 45 45 H 1.09001 * 110.37083 * 322.92950 * 26 16 14 46 46 H 1.09000 * 110.37034 * 85.14859 * 26 16 14 47 47 H 1.08998 * 109.50007 * 181.30693 * 27 12 11 48 48 H 1.09003 * 109.49438 * 301.40558 * 27 12 11 49 49 H 1.08997 * 109.59142 * 353.42466 * 28 9 7 50 50 H 1.09005 * 109.58436 * 113.70719 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0553 -1.2225 -0.2717 9 7 1.3701 -2.3623 0.3460 10 6 1.8141 -3.6529 -0.1979 11 6 2.0683 -4.6169 0.9653 12 6 0.8134 -4.7005 1.8371 13 7 1.0418 -5.6466 2.9320 14 6 -0.0026 -6.2692 3.5135 15 8 -1.1342 -6.0459 3.1292 16 7 0.2076 -7.1400 4.5205 17 6 1.5183 -7.5068 5.0765 18 6 1.2653 -8.5070 6.2244 19 6 -0.2084 -8.2222 6.6176 20 1 -0.2744 -7.3710 7.2953 21 6 -0.8618 -9.4612 7.2330 22 8 -0.7322 -10.5736 6.3317 23 6 -1.9586 -11.3235 6.4870 24 6 -2.9936 -10.1899 6.6962 25 8 -2.2560 -9.2105 7.4550 26 6 -0.8381 -7.8876 5.2422 27 6 0.4987 -3.3186 2.4146 28 6 0.2265 -2.3400 1.2682 29 1 -0.4849 0.8401 -0.0004 30 1 2.7345 -3.5133 -0.7647 31 1 1.0420 -4.0621 -0.8496 32 1 2.9034 -4.2527 1.5637 33 1 2.3056 -5.6059 0.5734 34 1 -0.0270 -5.0411 1.2322 35 1 1.9446 -5.8250 3.2385 36 1 2.1312 -7.9725 4.3048 37 1 2.0180 -6.6191 5.4642 38 1 1.9330 -8.3115 7.0635 39 1 1.3788 -9.5316 5.8703 40 1 -0.3771 -9.6987 8.1800 41 1 -1.9120 -11.9752 7.3595 42 1 -2.1829 -11.8955 5.5868 43 1 -3.8510 -10.5511 7.2640 44 1 -3.3133 -9.7754 5.7401 45 1 -1.7259 -7.2687 5.3719 46 1 -1.0894 -8.8025 4.7055 47 1 -0.3817 -3.3833 3.0540 48 1 1.3486 -2.9666 2.9994 49 1 0.0994 -1.3343 1.6687 50 1 -0.6772 -2.6386 0.7369 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350876607.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:48 Heat of formation + Delta-G solvation = -112.412126 kcal Electronic energy + Delta-G solvation = -30478.117024 eV Core-core repulsion = 26312.165778 eV Total energy + Delta-G solvation = -4165.951247 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.79722 -41.11039 -39.38674 -38.23284 -36.02235 -36.00441 -34.15459 -33.24337 -31.73313 -31.18735 -30.71675 -29.62688 -27.11202 -25.93302 -24.36887 -23.94884 -23.83477 -23.34045 -21.42827 -21.22711 -20.80562 -19.29203 -18.62707 -18.14748 -17.85635 -17.55295 -17.09465 -16.78594 -16.55644 -15.97499 -15.65576 -15.39708 -15.35879 -15.28582 -14.78993 -14.70532 -14.55847 -14.39153 -14.11323 -14.02732 -13.81341 -13.68270 -13.47846 -13.18842 -13.03375 -12.76467 -12.64803 -12.57625 -12.47531 -12.12676 -12.05046 -12.01956 -11.86517 -11.69093 -11.55635 -11.45563 -11.22710 -11.15962 -10.61201 -10.59733 -10.16433 -9.52226 -8.72161 -7.87389 -5.34192 1.46766 1.48554 1.53535 1.59726 2.09457 2.46464 2.51601 2.86207 3.04898 3.28901 3.46165 3.58579 3.65913 3.67982 3.85637 3.87017 4.04150 4.07773 4.19350 4.26101 4.32078 4.33727 4.38056 4.46494 4.53658 4.59000 4.65603 4.66195 4.75925 4.78464 4.81316 4.83087 4.88554 4.96631 5.01602 5.06703 5.07489 5.11485 5.23107 5.30575 5.32560 5.44666 5.57578 5.64043 5.68692 6.04054 6.06025 6.38528 6.97173 7.12774 7.53805 7.83576 8.37039 9.20035 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027640 B = 0.002083 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.777856 B =13437.515084 C =13639.507605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.057 4.057 3 Si 0.971 3.029 4 H -0.261 1.261 5 H -0.294 1.294 6 H -0.293 1.293 7 C -0.259 4.259 8 H 0.076 0.924 9 N -0.609 5.609 10 C 0.142 3.858 11 C -0.119 4.119 12 C 0.180 3.820 13 N -0.721 5.721 14 C 0.713 3.287 15 O -0.640 6.640 16 N -0.639 5.639 17 C 0.092 3.908 18 C -0.106 4.106 19 C -0.112 4.112 20 H 0.103 0.897 21 C 0.245 3.755 22 O -0.388 6.388 23 C 0.017 3.983 24 C 0.012 3.988 25 O -0.404 6.404 26 C 0.138 3.862 27 C -0.129 4.129 28 C 0.184 3.816 29 H 0.249 0.751 30 H 0.071 0.929 31 H 0.011 0.989 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.053 0.947 35 H 0.409 0.591 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.114 0.886 39 H 0.090 0.910 40 H 0.113 0.887 41 H 0.097 0.903 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.066 0.934 45 H 0.048 0.952 46 H 0.062 0.938 47 H 0.039 0.961 48 H 0.062 0.938 49 H 0.055 0.945 50 H -0.012 1.012 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.501 -26.714 18.335 32.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.252 4.252 3 Si 0.799 3.201 4 H -0.185 1.185 5 H -0.221 1.221 6 H -0.220 1.220 7 C -0.389 4.389 8 H 0.093 0.907 9 N -0.333 5.333 10 C 0.016 3.984 11 C -0.159 4.159 12 C 0.075 3.925 13 N -0.376 5.376 14 C 0.415 3.585 15 O -0.522 6.522 16 N -0.377 5.377 17 C -0.029 4.029 18 C -0.143 4.143 19 C -0.132 4.132 20 H 0.122 0.878 21 C 0.150 3.850 22 O -0.309 6.309 23 C -0.058 4.058 24 C -0.064 4.064 25 O -0.326 6.326 26 C 0.015 3.985 27 C -0.169 4.169 28 C 0.057 3.943 29 H 0.058 0.942 30 H 0.089 0.911 31 H 0.029 0.971 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.071 0.929 35 H 0.245 0.755 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.132 0.868 39 H 0.108 0.892 40 H 0.131 0.869 41 H 0.115 0.885 42 H 0.141 0.859 43 H 0.139 0.861 44 H 0.084 0.916 45 H 0.066 0.934 46 H 0.080 0.920 47 H 0.058 0.942 48 H 0.080 0.920 49 H 0.074 0.926 50 H 0.006 0.994 Dipole moment (debyes) X Y Z Total from point charges 2.719 -26.259 17.950 31.924 hybrid contribution -0.222 1.201 -0.249 1.247 sum 2.496 -25.058 17.701 30.781 Atomic orbital electron populations 1.70228 1.06975 1.25788 1.55611 1.25922 0.96029 1.01928 1.01347 0.85155 0.78825 0.79573 0.76580 1.18451 1.22083 1.21962 1.19614 0.93043 0.85686 1.40543 0.90663 1.44363 1.35646 1.02770 1.50508 1.21044 0.97998 0.85525 0.93858 1.22131 0.96011 1.00431 0.97300 1.20539 0.98532 0.86893 0.86551 1.45094 1.08436 1.45913 1.38139 1.15713 0.84503 0.78809 0.79506 1.90894 1.23812 1.69857 1.67609 1.47609 1.10059 1.44429 1.35568 1.22302 0.84065 0.99539 0.97034 1.22580 0.94069 0.99760 0.97939 1.22892 0.96682 0.98192 0.95425 0.87836 1.24014 0.82688 0.85441 0.92855 1.89174 1.39389 1.38259 1.64082 1.24548 0.81295 0.94758 1.05246 1.24403 0.96733 0.87995 0.97251 1.88900 1.17677 1.56222 1.69765 1.21903 0.90378 0.94662 0.91560 1.22305 1.00084 0.96018 0.98519 1.20445 0.87870 0.97241 0.88743 0.94211 0.91080 0.97076 0.90471 0.89095 0.92881 0.75457 0.90010 0.90231 0.86810 0.89190 0.86941 0.88537 0.85941 0.86066 0.91602 0.93376 0.92010 0.94193 0.91977 0.92646 0.99402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.93 11.20 21.65 0.24 -57.68 16 2 C -0.06 -3.28 4.92 84.86 0.42 -2.86 16 3 Si 0.97 45.54 29.59 68.60 2.03 47.57 16 4 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 5 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 6 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 7 C -0.26 -14.33 9.58 84.03 0.81 -13.53 16 8 H 0.08 3.96 7.89 -2.91 -0.02 3.94 16 9 N -0.61 -31.41 2.99 -699.15 -2.09 -33.50 16 10 C 0.14 5.83 6.52 86.36 0.56 6.40 16 11 C -0.12 -3.82 5.55 30.67 0.17 -3.65 16 12 C 0.18 6.59 2.42 45.02 0.11 6.70 16 13 N -0.72 -21.48 5.04 -457.70 -2.31 -23.79 16 14 C 0.71 24.34 8.45 179.05 1.51 25.86 16 15 O -0.64 -28.69 16.26 -3.97 -0.06 -28.75 16 16 N -0.64 -16.19 3.33 -829.71 -2.76 -18.95 16 17 C 0.09 1.39 6.15 86.73 0.53 1.92 16 18 C -0.11 -1.14 6.36 31.79 0.20 -0.94 16 19 C -0.11 -1.73 3.23 -9.40 -0.03 -1.76 16 20 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 21 C 0.25 3.33 3.83 71.98 0.28 3.61 16 22 O -0.39 -5.39 9.47 -126.21 -1.19 -6.59 16 23 C 0.02 0.15 7.95 72.64 0.58 0.72 16 24 C 0.01 0.14 8.07 72.64 0.59 0.73 16 25 O -0.40 -6.86 10.97 -126.21 -1.38 -8.25 16 26 C 0.14 3.29 6.09 86.86 0.53 3.82 16 27 C -0.13 -5.52 5.65 30.66 0.17 -5.34 16 28 C 0.18 9.65 5.30 86.35 0.46 10.11 16 29 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 30 H 0.07 2.73 7.93 -2.39 -0.02 2.71 16 31 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 32 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.05 2.28 7.58 -2.38 -0.02 2.26 16 35 H 0.41 9.07 7.59 -92.71 -0.70 8.37 16 36 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.09 0.98 7.23 -2.39 -0.02 0.97 16 40 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.05 1.41 8.04 -2.39 -0.02 1.40 16 46 H 0.06 1.52 7.31 -2.39 -0.02 1.50 16 47 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 48 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 49 H 0.06 3.26 6.06 -2.39 -0.01 3.24 16 50 H -0.01 -0.70 8.14 -2.38 -0.02 -0.72 16 Total: -1.00 -79.45 390.28 -0.42 -79.87 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: 0.23 Total: 18.29 kcal Atomic # 6 Polarization: 24.90 SS G_CDS: 6.88 Total: 31.78 kcal Atomic # 7 Polarization: -127.01 SS G_CDS: -6.91 Total: -133.93 kcal Atomic # 8 Polarization: -40.94 SS G_CDS: -2.64 Total: -43.58 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -79.45 -0.42 -79.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350876607.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.539 kcal (2) G-P(sol) polarization free energy of solvation -79.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds