Wall clock time and date at job start Sat Apr 11 2020 05:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.87326 * 2 1 4 4 C 1.54104 * 109.87920 * 238.84143 * 2 1 3 5 5 C 1.54816 * 104.18851 * 242.60495 * 4 2 1 6 6 H 1.08995 * 110.93937 * 262.66989 * 5 4 2 7 7 N 1.46498 * 110.90830 * 139.07394 * 5 4 2 8 8 C 1.34775 * 119.99917 * 160.83889 * 7 5 4 9 9 O 1.21353 * 120.00159 * 0.02562 * 8 7 5 10 10 C 1.49447 * 120.00009 * 180.02562 * 8 7 5 11 11 O 1.21352 * 120.00180 * 353.28589 * 10 8 7 12 12 N 1.34776 * 120.00070 * 173.28476 * 10 8 7 13 13 C 1.47077 * 120.88229 * 171.67093 * 12 10 8 14 14 C 1.53708 * 108.27629 * 128.75375 * 13 12 10 15 15 N 1.46904 * 109.25387 * 54.08484 * 14 13 12 16 16 C 1.46902 * 110.99594 * 172.60901 * 15 14 13 17 17 C 1.50696 * 109.47173 * 294.29766 * 16 15 14 18 18 H 1.08004 * 119.99836 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00264 * 180.02562 * 17 16 15 20 20 N 1.31510 * 120.00225 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 119.99589 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.46747 * 90.00448 * 21 19 17 23 23 H 1.48501 * 109.47092 * 210.00100 * 21 19 17 24 24 H 1.48494 * 109.47464 * 330.00592 * 21 19 17 25 25 C 1.46902 * 111.26700 * 296.75734 * 15 14 13 26 26 C 1.47083 * 120.88179 * 351.95093 * 12 10 8 27 27 C 1.54998 * 102.09199 * 20.88035 * 5 4 2 28 28 O 1.43746 * 109.88260 * 121.00853 * 2 1 3 29 29 H 1.08997 * 109.47049 * 300.44338 * 1 2 3 30 30 H 1.09000 * 109.47462 * 60.44611 * 1 2 3 31 31 H 1.09005 * 109.46855 * 180.44344 * 1 2 3 32 32 H 1.08996 * 109.47608 * 179.55150 * 3 2 1 33 33 H 1.08999 * 109.47111 * 299.55886 * 3 2 1 34 34 H 1.09004 * 109.47002 * 59.55059 * 3 2 1 35 35 H 1.08996 * 110.48822 * 123.92698 * 4 2 1 36 36 H 1.09002 * 110.48731 * 1.27802 * 4 2 1 37 37 H 0.97000 * 120.00355 * 340.84667 * 7 5 4 38 38 H 1.09000 * 109.63101 * 248.52192 * 13 12 10 39 39 H 1.09000 * 109.62935 * 9.10451 * 13 12 10 40 40 H 1.09000 * 109.64660 * 294.08016 * 14 13 12 41 41 H 1.08998 * 109.44387 * 173.96682 * 14 13 12 42 42 H 1.08998 * 109.47024 * 54.30351 * 16 15 14 43 43 H 1.08999 * 109.46365 * 174.30201 * 16 15 14 44 44 H 0.97002 * 119.99713 * 179.97438 * 20 19 17 45 45 H 1.08995 * 109.49171 * 303.14328 * 25 15 14 46 46 H 1.08997 * 109.48828 * 183.06892 * 25 15 14 47 47 H 1.09002 * 109.62846 * 350.89520 * 26 12 10 48 48 H 1.08998 * 109.62881 * 111.47859 * 26 12 10 49 49 H 1.08995 * 110.61873 * 81.47315 * 27 5 4 50 50 H 1.08997 * 110.62089 * 204.32096 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0501 1.4389 0.0000 4 6 2.0540 -0.7498 -1.2402 5 6 2.8325 -1.9533 -0.6551 6 1 3.9004 -1.7405 -0.6076 7 7 2.5780 -3.1685 -1.4327 8 6 3.4254 -4.2130 -1.3473 9 8 4.3990 -4.1471 -0.6257 10 6 3.1662 -5.4525 -2.1410 11 8 2.1328 -5.5673 -2.7667 12 7 4.0802 -6.4428 -2.1619 13 6 3.7733 -7.7403 -2.7828 14 6 4.9018 -8.0818 -3.7689 15 7 6.1921 -8.0182 -3.0694 16 6 7.2803 -8.5067 -3.9268 17 6 7.0841 -9.9757 -4.1996 18 1 6.2355 -10.4945 -3.7785 19 6 7.9877 -10.6575 -4.9868 20 7 7.8162 -11.9393 -5.2253 21 14 9.4549 -9.7599 -5.7157 22 1 10.5990 -9.8337 -4.7718 23 1 9.8338 -10.3949 -7.0035 24 1 9.0983 -8.3378 -5.9510 25 6 6.4708 -6.6585 -2.5881 26 6 5.4088 -6.2567 -1.5591 27 6 2.2281 -2.0704 0.7674 28 8 2.0188 -0.6964 1.1586 29 1 -0.3633 0.5207 0.8860 30 1 -0.3634 0.5069 -0.8939 31 1 -0.3633 -1.0277 0.0080 32 1 3.1400 1.4313 0.0080 33 1 1.6968 1.9529 -0.8939 34 1 1.6838 1.9576 0.8860 35 1 2.7196 -0.1102 -1.8197 36 1 1.2237 -1.0956 -1.8560 37 1 1.7998 -3.2214 -2.0093 38 1 3.7108 -8.5091 -2.0127 39 1 2.8255 -7.6755 -3.3172 40 1 4.8985 -7.3667 -4.5916 41 1 4.7495 -9.0875 -4.1605 42 1 7.2748 -7.9582 -4.8687 43 1 8.2352 -8.3550 -3.4236 44 1 8.4517 -12.4188 -5.7794 45 1 6.4457 -5.9634 -3.4272 46 1 7.4563 -6.6323 -2.1230 47 1 5.5429 -5.2105 -1.2841 48 1 5.5005 -6.8857 -0.6736 49 1 1.2814 -2.6098 0.7390 50 1 2.9284 -2.5618 1.4428 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001355073555.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:53 Heat of formation + Delta-G solvation = -109.721589 kcal Electronic energy + Delta-G solvation = -30149.155717 eV Core-core repulsion = 25983.321140 eV Total energy + Delta-G solvation = -4165.834576 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.19078 -41.05676 -39.82076 -39.03634 -36.57065 -35.62988 -34.40575 -34.12170 -32.21502 -31.39656 -30.65077 -28.31150 -27.78480 -26.90408 -25.91909 -24.55827 -23.43025 -22.50568 -21.96052 -21.10889 -20.74095 -19.14064 -18.66293 -18.33588 -17.56234 -17.13879 -16.86993 -16.60612 -16.38259 -16.18718 -16.13512 -15.77696 -15.62782 -15.45153 -15.07244 -14.97252 -14.62121 -14.46438 -14.30238 -14.16039 -13.75826 -13.68949 -13.30367 -13.12962 -12.90173 -12.87537 -12.81672 -12.60252 -12.50523 -12.46013 -12.29048 -12.22022 -12.04184 -11.93148 -11.85370 -11.64488 -11.46614 -10.83385 -10.78482 -10.50100 -10.23291 -9.95460 -9.09898 -8.28136 -6.31591 0.20759 1.11296 1.35408 1.36319 1.46490 1.97649 2.24885 2.34188 2.85361 3.04104 3.13648 3.15358 3.39416 3.66407 3.81965 3.89747 3.95643 3.98676 4.04766 4.16709 4.19954 4.25785 4.36435 4.49031 4.54780 4.63183 4.66520 4.71749 4.77984 4.78838 4.80516 4.83875 4.89611 4.92776 4.95290 4.95866 4.99557 5.09251 5.18180 5.27740 5.28975 5.37077 5.51332 5.82110 5.93061 5.95736 6.14792 6.26612 6.55408 6.59438 6.74513 6.79874 7.31928 8.87952 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.029409 B = 0.002032 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.868333 B =13778.267129 C =14148.812712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.090 3.910 3 C -0.144 4.144 4 C -0.147 4.147 5 C 0.113 3.887 6 H 0.103 0.897 7 N -0.675 5.675 8 C 0.518 3.482 9 O -0.519 6.519 10 C 0.504 3.496 11 O -0.545 6.545 12 N -0.579 5.579 13 C 0.122 3.878 14 C 0.056 3.944 15 N -0.541 5.541 16 C 0.171 3.829 17 C -0.516 4.516 18 H 0.043 0.957 19 C 0.009 3.991 20 N -0.946 5.946 21 Si 0.946 3.054 22 H -0.264 1.264 23 H -0.283 1.283 24 H -0.254 1.254 25 C 0.037 3.963 26 C 0.091 3.909 27 C 0.038 3.962 28 O -0.381 6.381 29 H 0.059 0.941 30 H 0.085 0.915 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.089 0.911 34 H 0.060 0.940 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.422 0.578 38 H 0.084 0.916 39 H 0.100 0.900 40 H 0.023 0.977 41 H 0.077 0.923 42 H -0.014 1.014 43 H 0.034 0.966 44 H 0.267 0.733 45 H 0.027 0.973 46 H 0.096 0.904 47 H 0.144 0.856 48 H 0.079 0.921 49 H 0.069 0.931 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.686 28.577 9.402 33.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.051 3.949 3 C -0.201 4.201 4 C -0.185 4.185 5 C 0.008 3.992 6 H 0.121 0.879 7 N -0.330 5.330 8 C 0.299 3.701 9 O -0.397 6.397 10 C 0.287 3.713 11 O -0.424 6.424 12 N -0.311 5.311 13 C 0.000 4.000 14 C -0.073 4.073 15 N -0.266 5.266 16 C 0.044 3.956 17 C -0.554 4.554 18 H 0.061 0.939 19 C -0.189 4.189 20 N -0.586 5.586 21 Si 0.770 3.230 22 H -0.189 1.189 23 H -0.209 1.209 24 H -0.178 1.178 25 C -0.092 4.092 26 C -0.030 4.030 27 C -0.040 4.040 28 O -0.300 6.300 29 H 0.078 0.922 30 H 0.104 0.896 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.108 0.892 34 H 0.079 0.921 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.261 0.739 38 H 0.103 0.897 39 H 0.118 0.882 40 H 0.042 0.958 41 H 0.095 0.905 42 H 0.003 0.997 43 H 0.052 0.948 44 H 0.076 0.924 45 H 0.046 0.954 46 H 0.114 0.886 47 H 0.161 0.839 48 H 0.098 0.902 49 H 0.088 0.912 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -13.467 28.235 10.118 32.878 hybrid contribution 0.463 -0.325 -1.563 1.662 sum -13.004 27.910 8.555 31.957 Atomic orbital electron populations 1.22280 0.93733 1.02649 1.03435 1.22319 0.94618 0.93800 0.84178 1.21945 1.01699 0.93064 1.03432 1.23337 1.01352 0.95539 0.98237 1.22695 1.02029 0.83492 0.90984 0.87883 1.45652 1.27880 1.13434 1.45996 1.19959 0.83296 0.84391 0.82444 1.90554 1.27967 1.81349 1.39813 1.20232 0.84022 0.84779 0.82233 1.90734 1.27227 1.80537 1.43888 1.48192 1.14872 1.13091 1.54975 1.21945 0.98237 0.83240 0.96560 1.22343 0.89324 1.01286 0.94320 1.61845 1.02631 1.21851 1.40228 1.19949 0.90988 0.94111 0.90505 1.21236 1.10468 0.93829 1.29889 0.93913 1.25819 1.01069 0.95471 0.96528 1.70041 1.38548 1.09972 1.40062 0.85736 0.79593 0.79526 0.78183 1.18890 1.20921 1.17760 1.22621 1.00234 0.88654 0.97693 1.22891 0.78516 1.06505 0.95070 1.23895 1.00487 0.84367 0.95260 1.88961 1.86280 1.20550 1.34248 0.92150 0.89587 0.92495 0.92053 0.89181 0.92128 0.87734 0.87946 0.73935 0.89744 0.88190 0.95843 0.90458 0.99668 0.94826 0.92446 0.95427 0.88604 0.83878 0.90240 0.91249 0.88955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 8.61 71.98 0.62 -0.79 16 2 C 0.09 0.95 1.19 -10.42 -0.01 0.94 16 3 C -0.14 -1.21 8.68 71.98 0.62 -0.59 16 4 C -0.15 -1.22 6.02 31.59 0.19 -1.03 16 5 C 0.11 1.49 3.40 46.30 0.16 1.65 16 6 H 0.10 1.58 7.72 -2.39 -0.02 1.56 16 7 N -0.68 -10.31 5.21 -437.72 -2.28 -12.59 16 8 C 0.52 11.26 7.74 87.27 0.68 11.93 16 9 O -0.52 -12.70 12.94 -3.26 -0.04 -12.75 16 10 C 0.50 13.33 7.74 87.27 0.68 14.00 16 11 O -0.55 -15.93 15.96 -3.25 -0.05 -15.98 16 12 N -0.58 -16.54 3.00 -818.61 -2.46 -19.00 16 13 C 0.12 3.79 6.65 86.51 0.57 4.36 16 14 C 0.06 2.12 5.47 86.54 0.47 2.59 16 15 N -0.54 -21.70 4.62 -898.86 -4.15 -25.86 16 16 C 0.17 8.04 3.79 85.56 0.32 8.36 16 17 C -0.52 -29.22 8.96 25.60 0.23 -28.99 16 18 H 0.04 2.68 7.37 -2.91 -0.02 2.66 16 19 C 0.01 0.50 5.47 84.66 0.46 0.96 16 20 N -0.95 -58.44 13.96 21.45 0.30 -58.14 16 21 Si 0.95 43.50 27.47 68.60 1.88 45.39 16 22 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 23 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 24 H -0.25 -10.96 6.54 99.48 0.65 -10.31 16 25 C 0.04 1.16 5.62 86.38 0.49 1.65 16 26 C 0.09 2.51 6.10 86.35 0.53 3.03 16 27 C 0.04 0.57 7.36 72.67 0.53 1.11 16 28 O -0.38 -6.34 10.86 -148.98 -1.62 -7.96 16 29 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.06 0.53 8.13 -2.38 -0.02 0.51 16 32 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.10 0.64 7.70 -2.39 -0.02 0.62 16 36 H 0.10 0.56 7.28 -2.39 -0.02 0.55 16 37 H 0.42 5.33 7.83 -92.71 -0.73 4.60 16 38 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 39 H 0.10 2.95 7.05 -2.39 -0.02 2.93 16 40 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.08 3.32 6.67 -2.39 -0.02 3.30 16 42 H -0.01 -0.68 7.18 -2.39 -0.02 -0.70 16 43 H 0.03 1.53 7.40 -2.39 -0.02 1.52 16 44 H 0.27 15.39 8.31 -92.71 -0.77 14.61 16 45 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.10 2.81 7.99 -2.39 -0.02 2.79 16 47 H 0.14 3.64 4.45 -37.60 -0.17 3.48 16 48 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 49 H 0.07 0.98 8.13 -2.39 -0.02 0.96 16 50 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -69.35 392.20 -1.87 -71.22 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 0.01 Total: 16.46 kcal Atomic # 6 Polarization: 12.66 SS G_CDS: 6.54 Total: 19.20 kcal Atomic # 7 Polarization: -107.00 SS G_CDS: -8.59 Total: -115.59 kcal Atomic # 8 Polarization: -34.97 SS G_CDS: -1.71 Total: -36.69 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 1.88 Total: 45.39 kcal Total: -69.35 -1.87 -71.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355073555.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.498 kcal (2) G-P(sol) polarization free energy of solvation -69.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds