Wall clock time and date at job start Sat Apr 11 2020 05:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 114.00500 * 2 1 4 4 H 1.09003 * 110.77650 * 328.20028 * 3 2 1 5 5 C 1.54937 * 110.72531 * 91.44621 * 3 2 1 6 6 N 1.48533 * 103.22509 * 155.77903 * 5 3 2 7 7 C 1.46898 * 111.00029 * 200.28086 * 6 5 3 8 8 C 1.50702 * 109.46893 * 293.62555 * 7 6 5 9 9 O 1.21274 * 119.99889 * 353.86437 * 8 7 6 10 10 N 1.34776 * 119.99690 * 173.86288 * 8 7 6 11 11 C 1.46499 * 119.99953 * 179.97438 * 10 8 7 12 12 C 1.50703 * 109.46881 * 90.00319 * 11 10 8 13 13 H 1.07997 * 120.00327 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00006 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99771 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00127 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46807 * 59.99919 * 16 14 12 18 18 H 1.48496 * 109.47276 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47150 * 300.00182 * 16 14 12 20 20 C 1.46497 * 120.00336 * 359.97438 * 10 8 7 21 21 C 1.52998 * 109.47474 * 269.99871 * 20 10 8 22 22 C 1.47192 * 109.47364 * 180.02562 * 21 20 10 23 23 N 8.75315 * 130.85783 * 79.51394 * 2 1 3 24 24 C 1.47905 * 105.82109 * 320.79307 * 6 5 3 25 25 C 1.53004 * 109.91623 * 265.98077 * 24 6 5 26 26 C 1.52993 * 109.91932 * 144.68309 * 24 6 5 27 27 O 1.42908 * 109.47082 * 180.02562 * 26 24 6 28 28 C 1.54001 * 107.05393 * 25.32998 * 24 6 5 29 29 H 1.08998 * 109.47062 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47491 * 300.00514 * 1 2 3 31 31 H 1.09003 * 109.46715 * 60.00743 * 1 2 3 32 32 H 1.08993 * 110.67051 * 37.34140 * 5 3 2 33 33 H 1.09001 * 110.66572 * 274.20985 * 5 3 2 34 34 H 1.08994 * 109.47561 * 173.62383 * 7 6 5 35 35 H 1.08997 * 109.46816 * 53.62308 * 7 6 5 36 36 H 1.08998 * 109.47757 * 210.00412 * 11 10 8 37 37 H 1.08999 * 109.47153 * 330.00510 * 11 10 8 38 38 H 0.97008 * 119.99554 * 180.02562 * 15 14 12 39 39 H 1.08999 * 109.47339 * 29.99999 * 20 10 8 40 40 H 1.09004 * 109.47522 * 149.99608 * 20 10 8 41 41 H 1.08999 * 109.46942 * 300.00372 * 21 20 10 42 42 H 1.09004 * 109.46960 * 59.99393 * 21 20 10 43 43 H 1.09005 * 109.46839 * 54.87654 * 25 24 6 44 44 H 1.09003 * 109.47064 * 174.87325 * 25 24 6 45 45 H 1.08993 * 109.46817 * 294.87794 * 25 24 6 46 46 H 1.08998 * 109.47089 * 300.00264 * 26 24 6 47 47 H 1.09003 * 109.47199 * 60.00164 * 26 24 6 48 48 H 0.96693 * 113.99730 * 180.02562 * 27 26 24 49 49 H 1.09002 * 110.30747 * 239.85662 * 28 24 6 50 50 H 1.09000 * 110.30410 * 117.69773 * 28 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3764 2.0110 -0.5370 5 6 2.2668 1.7914 1.4486 6 7 3.3558 2.7882 1.2849 7 6 4.0621 3.0095 2.5538 8 6 3.1301 3.6657 3.5396 9 8 2.0273 4.0247 3.1850 10 7 3.5223 3.8535 4.8153 11 6 2.6165 4.4920 5.7736 12 6 1.7789 3.4385 6.4516 13 1 1.9085 2.3975 6.1947 14 6 0.8470 3.8036 7.3999 15 7 0.6894 5.0712 7.7131 16 14 -0.1919 2.4978 8.2398 17 1 0.6944 1.5453 8.9558 18 1 -1.1099 3.1449 9.2113 19 1 -0.9853 1.7652 7.2206 20 6 4.8542 3.4194 5.2438 21 6 4.7828 1.9765 5.7477 22 6 6.1209 1.5405 6.1787 23 7 7.1552 1.2049 6.5098 24 6 4.2656 2.2272 0.2627 25 6 5.3997 1.4560 0.9411 26 6 4.8390 3.3536 -0.5994 27 8 5.7157 2.8011 -1.5835 28 6 3.4304 1.2719 -0.6100 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 2.5935 0.9649 2.0796 33 1 1.3738 2.2615 1.8605 34 1 4.9232 3.6554 2.3825 35 1 4.3991 2.0531 2.9535 36 1 3.1991 5.0298 6.5215 37 1 1.9658 5.1910 5.2483 38 1 0.0340 5.3280 8.3806 39 1 5.5434 3.4762 4.4012 40 1 5.2071 4.0674 6.0461 41 1 4.0936 1.9196 6.5902 42 1 4.4299 1.3285 4.9453 43 1 4.9790 0.7016 1.6061 44 1 6.0133 0.9702 0.1825 45 1 6.0143 2.1469 1.5181 46 1 4.0248 3.8826 -1.0946 47 1 5.3928 4.0484 0.0320 48 1 6.1168 3.4597 -2.1669 49 1 3.8386 0.2623 -0.5631 50 1 3.4076 1.6241 -1.6413 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413034772.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:11 Heat of formation + Delta-G solvation = -84.073565 kcal Electronic energy + Delta-G solvation = -31422.512335 eV Core-core repulsion = 27257.789941 eV Total energy + Delta-G solvation = -4164.722394 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.51715 -38.91321 -37.53860 -36.78984 -36.24024 -35.18092 -32.92660 -31.84147 -31.12642 -30.76327 -28.11023 -26.99923 -26.54454 -25.84893 -24.64120 -23.86330 -22.62181 -21.24398 -19.16704 -18.43096 -17.64893 -17.55077 -16.92198 -16.69055 -16.29648 -15.80147 -15.56600 -15.33321 -15.11027 -14.83654 -14.61850 -14.52361 -14.25764 -13.89248 -13.58407 -13.49947 -13.10747 -13.00409 -12.78212 -12.61073 -12.42589 -12.37427 -12.26375 -12.12226 -11.80547 -11.70117 -11.67897 -11.33153 -11.30959 -11.24090 -11.01156 -10.85502 -10.82909 -10.60651 -10.56168 -10.18949 -10.08639 -9.70789 -9.60662 -9.02285 -8.49837 -8.37986 -7.85543 -6.11636 -4.16939 2.79675 2.89891 3.22450 3.26653 3.31813 3.32571 3.36154 3.67088 3.89619 4.22139 4.36099 4.41053 4.57660 4.58069 4.84635 4.96300 4.99345 5.09878 5.16345 5.17816 5.20813 5.24499 5.28883 5.33049 5.37079 5.40391 5.44122 5.46416 5.52876 5.56794 5.61461 5.76572 5.85022 5.91369 5.92513 5.95554 6.04395 6.15020 6.21751 6.76074 6.80071 7.02517 7.18028 7.36346 7.41872 7.43523 7.65986 7.83747 8.13703 8.25429 8.81453 8.98985 9.48789 10.96358 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009399 B = 0.003924 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2978.365817 B = 7133.810602 C = 8529.711705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.383 6.383 3 C 0.081 3.919 4 H 0.077 0.923 5 C 0.020 3.980 6 N -0.483 5.483 7 C 0.024 3.976 8 C 0.509 3.491 9 O -0.514 6.514 10 N -0.600 5.600 11 C 0.246 3.754 12 C -0.529 4.529 13 H 0.059 0.941 14 C 0.065 3.935 15 N -0.892 5.892 16 Si 0.893 3.107 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 C 0.124 3.876 21 C -0.054 4.054 22 C 0.218 3.782 23 N -0.451 5.451 24 C 0.094 3.906 25 C -0.166 4.166 26 C 0.097 3.903 27 O -0.573 6.573 28 C -0.109 4.109 29 H 0.084 0.916 30 H 0.047 0.953 31 H 0.041 0.959 32 H 0.053 0.947 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.066 0.934 36 H 0.034 0.966 37 H 0.046 0.954 38 H 0.264 0.736 39 H 0.071 0.929 40 H 0.088 0.912 41 H 0.131 0.869 42 H 0.102 0.898 43 H 0.057 0.943 44 H 0.070 0.930 45 H 0.060 0.940 46 H 0.055 0.945 47 H 0.047 0.953 48 H 0.379 0.621 49 H 0.081 0.919 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.020 -5.161 -16.251 18.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.301 6.301 3 C 0.023 3.977 4 H 0.095 0.905 5 C -0.108 4.108 6 N -0.209 5.209 7 C -0.108 4.108 8 C 0.294 3.706 9 O -0.389 6.389 10 N -0.333 5.333 11 C 0.127 3.873 12 C -0.568 4.568 13 H 0.077 0.923 14 C -0.138 4.138 15 N -0.530 5.530 16 Si 0.721 3.279 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.202 1.202 20 C -0.003 4.003 21 C -0.095 4.095 22 C -0.100 4.100 23 N -0.129 5.129 24 C 0.005 3.995 25 C -0.224 4.224 26 C 0.018 3.982 27 O -0.378 6.378 28 C -0.147 4.147 29 H 0.102 0.898 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.122 0.878 34 H 0.117 0.883 35 H 0.083 0.917 36 H 0.052 0.948 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.106 0.894 41 H 0.149 0.851 42 H 0.120 0.880 43 H 0.076 0.924 44 H 0.089 0.911 45 H 0.079 0.921 46 H 0.073 0.927 47 H 0.065 0.935 48 H 0.226 0.774 49 H 0.100 0.900 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.563 -5.530 -15.687 18.272 hybrid contribution -0.715 -0.593 0.673 1.147 sum 6.848 -6.123 -15.013 17.601 Atomic orbital electron populations 1.22799 0.80854 1.02603 1.00414 1.87880 1.19925 1.27312 1.94940 1.23087 0.94700 0.84371 0.95586 0.90533 1.23747 0.96629 0.93627 0.96770 1.64293 1.08630 1.41948 1.06059 1.22389 0.97169 1.00800 0.90405 1.20135 0.87782 0.80188 0.82476 1.90673 1.21246 1.49374 1.77611 1.48227 1.15314 1.59665 1.10053 1.19343 0.88213 0.93384 0.86313 1.21368 1.20346 0.93572 1.21523 0.92295 1.24910 0.96802 0.95343 0.96761 1.69914 1.35093 1.15424 1.32601 0.86635 0.80366 0.81635 0.79252 1.20206 1.21234 1.20184 1.21247 0.85792 0.92820 1.00437 1.20002 0.86332 0.98490 1.04678 1.29290 0.94759 0.93069 0.92843 1.81211 1.12443 1.09314 1.09917 1.21665 0.92612 0.92891 0.92357 1.22372 0.98471 1.00439 1.01122 1.21968 0.92399 0.94069 0.89726 1.86410 1.64401 1.38518 1.48442 1.22455 0.93009 1.00008 0.99204 0.89782 0.93454 0.94051 0.92916 0.87817 0.88328 0.91667 0.94827 0.93620 0.92600 0.91116 0.89385 0.85096 0.87990 0.92403 0.91081 0.92087 0.92669 0.93457 0.77401 0.90005 0.90137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.88 101.05 1.10 1.41 16 2 O -0.38 -4.89 10.44 -35.23 -0.37 -5.26 16 3 C 0.08 1.00 3.51 -24.88 -0.09 0.92 16 4 H 0.08 0.92 7.89 -51.93 -0.41 0.51 16 5 C 0.02 0.29 5.50 -1.90 -0.01 0.27 16 6 N -0.48 -6.49 4.60 -216.42 -1.00 -7.48 16 7 C 0.02 0.31 2.58 -4.98 -0.01 0.30 16 8 C 0.51 9.09 7.36 -10.98 -0.08 9.01 16 9 O -0.51 -11.51 14.43 5.56 0.08 -11.43 16 10 N -0.60 -10.63 2.46 -175.06 -0.43 -11.06 16 11 C 0.25 5.68 5.20 -5.19 -0.03 5.65 16 12 C -0.53 -13.29 8.92 -34.44 -0.31 -13.59 16 13 H 0.06 1.43 7.42 -52.49 -0.39 1.04 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 15 N -0.89 -24.92 13.29 55.43 0.74 -24.19 16 16 Si 0.89 20.48 29.54 -169.99 -5.02 15.46 16 17 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 18 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 C 0.12 1.61 5.13 -4.04 -0.02 1.59 16 21 C -0.05 -0.66 5.97 -29.52 -0.18 -0.84 16 22 C 0.22 2.88 15.43 -20.74 -0.32 2.56 16 23 N -0.45 -7.00 18.54 42.18 0.78 -6.21 16 24 C 0.09 1.05 0.70 -130.53 -0.09 0.96 16 25 C -0.17 -1.71 6.78 37.16 0.25 -1.45 16 26 C 0.10 0.94 6.07 37.15 0.23 1.17 16 27 O -0.57 -5.00 12.64 -35.23 -0.45 -5.45 16 28 C -0.11 -1.22 5.75 -25.38 -0.15 -1.37 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.04 0.37 8.11 -51.93 -0.42 -0.05 16 32 H 0.05 0.76 7.91 -51.93 -0.41 0.35 16 33 H 0.10 1.76 6.88 -51.93 -0.36 1.41 16 34 H 0.10 1.11 7.14 -51.93 -0.37 0.74 16 35 H 0.07 0.76 5.11 -51.93 -0.27 0.50 16 36 H 0.03 0.79 7.89 -51.93 -0.41 0.38 16 37 H 0.05 1.23 7.42 -51.93 -0.39 0.84 16 38 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 39 H 0.07 0.72 6.61 -51.93 -0.34 0.38 16 40 H 0.09 1.13 7.89 -51.93 -0.41 0.72 16 41 H 0.13 1.84 7.26 -51.93 -0.38 1.47 16 42 H 0.10 1.12 7.12 -51.93 -0.37 0.75 16 43 H 0.06 0.61 7.46 -51.93 -0.39 0.22 16 44 H 0.07 0.73 7.81 -51.93 -0.41 0.33 16 45 H 0.06 0.58 6.80 -51.93 -0.35 0.23 16 46 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 48 H 0.38 1.67 9.12 45.56 0.42 2.09 16 49 H 0.08 0.95 7.62 -51.93 -0.40 0.55 16 50 H 0.08 0.85 7.54 -51.93 -0.39 0.46 16 LS Contribution 404.39 15.07 6.09 6.09 Total: -1.00 -32.45 404.39 -6.63 -39.08 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -7.26 Total: 2.25 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: 0.20 Total: 8.19 kcal Atomic # 7 Polarization: -49.04 SS G_CDS: 0.09 Total: -48.95 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.73 Total: -22.13 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.45 -6.63 -39.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413034772.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.992 kcal (2) G-P(sol) polarization free energy of solvation -32.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds