Wall clock time and date at job start Sat Apr 11 2020 05:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 114.00500 * 2 1 4 4 H 1.09003 * 110.77650 * 328.20028 * 3 2 1 5 5 C 1.54937 * 110.72531 * 91.44621 * 3 2 1 6 6 N 1.48533 * 103.22509 * 155.77903 * 5 3 2 7 7 C 1.46898 * 111.00029 * 200.28086 * 6 5 3 8 8 C 1.50702 * 109.46893 * 293.62555 * 7 6 5 9 9 O 1.21274 * 119.99889 * 353.86437 * 8 7 6 10 10 N 1.34776 * 119.99690 * 173.86288 * 8 7 6 11 11 C 1.46499 * 119.99953 * 179.97438 * 10 8 7 12 12 C 1.50703 * 109.46881 * 90.00319 * 11 10 8 13 13 H 1.07997 * 120.00327 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00006 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99771 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00127 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46807 * 59.99919 * 16 14 12 18 18 H 1.48496 * 109.47276 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47150 * 300.00182 * 16 14 12 20 20 C 1.46497 * 120.00336 * 359.97438 * 10 8 7 21 21 C 1.52998 * 109.47474 * 269.99871 * 20 10 8 22 22 C 1.47192 * 109.47364 * 180.02562 * 21 20 10 23 23 N 8.75315 * 130.85783 * 79.51394 * 2 1 3 24 24 C 1.47905 * 105.82109 * 320.79307 * 6 5 3 25 25 C 1.53004 * 109.91623 * 265.98077 * 24 6 5 26 26 C 1.52993 * 109.91932 * 144.68309 * 24 6 5 27 27 O 1.42908 * 109.47082 * 180.02562 * 26 24 6 28 28 C 1.54001 * 107.05393 * 25.32998 * 24 6 5 29 29 H 1.08998 * 109.47062 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47491 * 300.00514 * 1 2 3 31 31 H 1.09003 * 109.46715 * 60.00743 * 1 2 3 32 32 H 1.08993 * 110.67051 * 37.34140 * 5 3 2 33 33 H 1.09001 * 110.66572 * 274.20985 * 5 3 2 34 34 H 1.08994 * 109.47561 * 173.62383 * 7 6 5 35 35 H 1.08997 * 109.46816 * 53.62308 * 7 6 5 36 36 H 1.08998 * 109.47757 * 210.00412 * 11 10 8 37 37 H 1.08999 * 109.47153 * 330.00510 * 11 10 8 38 38 H 0.97008 * 119.99554 * 180.02562 * 15 14 12 39 39 H 1.08999 * 109.47339 * 29.99999 * 20 10 8 40 40 H 1.09004 * 109.47522 * 149.99608 * 20 10 8 41 41 H 1.08999 * 109.46942 * 300.00372 * 21 20 10 42 42 H 1.09004 * 109.46960 * 59.99393 * 21 20 10 43 43 H 1.09005 * 109.46839 * 54.87654 * 25 24 6 44 44 H 1.09003 * 109.47064 * 174.87325 * 25 24 6 45 45 H 1.08993 * 109.46817 * 294.87794 * 25 24 6 46 46 H 1.08998 * 109.47089 * 300.00264 * 26 24 6 47 47 H 1.09003 * 109.47199 * 60.00164 * 26 24 6 48 48 H 0.96693 * 113.99730 * 180.02562 * 27 26 24 49 49 H 1.09002 * 110.30747 * 239.85662 * 28 24 6 50 50 H 1.09000 * 110.30410 * 117.69773 * 28 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3764 2.0110 -0.5370 5 6 2.2668 1.7914 1.4486 6 7 3.3558 2.7882 1.2849 7 6 4.0621 3.0095 2.5538 8 6 3.1301 3.6657 3.5396 9 8 2.0273 4.0247 3.1850 10 7 3.5223 3.8535 4.8153 11 6 2.6165 4.4920 5.7736 12 6 1.7789 3.4385 6.4516 13 1 1.9085 2.3975 6.1947 14 6 0.8470 3.8036 7.3999 15 7 0.6894 5.0712 7.7131 16 14 -0.1919 2.4978 8.2398 17 1 0.6944 1.5453 8.9558 18 1 -1.1099 3.1449 9.2113 19 1 -0.9853 1.7652 7.2206 20 6 4.8542 3.4194 5.2438 21 6 4.7828 1.9765 5.7477 22 6 6.1209 1.5405 6.1787 23 7 7.1552 1.2049 6.5098 24 6 4.2656 2.2272 0.2627 25 6 5.3997 1.4560 0.9411 26 6 4.8390 3.3536 -0.5994 27 8 5.7157 2.8011 -1.5835 28 6 3.4304 1.2719 -0.6100 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 2.5935 0.9649 2.0796 33 1 1.3738 2.2615 1.8605 34 1 4.9232 3.6554 2.3825 35 1 4.3991 2.0531 2.9535 36 1 3.1991 5.0298 6.5215 37 1 1.9658 5.1910 5.2483 38 1 0.0340 5.3280 8.3806 39 1 5.5434 3.4762 4.4012 40 1 5.2071 4.0674 6.0461 41 1 4.0936 1.9196 6.5902 42 1 4.4299 1.3285 4.9453 43 1 4.9790 0.7016 1.6061 44 1 6.0133 0.9702 0.1825 45 1 6.0143 2.1469 1.5181 46 1 4.0248 3.8826 -1.0946 47 1 5.3928 4.0484 0.0320 48 1 6.1168 3.4597 -2.1669 49 1 3.8386 0.2623 -0.5631 50 1 3.4076 1.6241 -1.6413 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413034772.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:10 Heat of formation + Delta-G solvation = -108.967089 kcal Electronic energy + Delta-G solvation = -31423.591800 eV Core-core repulsion = 27257.789941 eV Total energy + Delta-G solvation = -4165.801859 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.57476 -40.20637 -38.42522 -37.96324 -37.06289 -36.57954 -34.79924 -32.93035 -32.08384 -32.01615 -29.67446 -27.98393 -27.47985 -26.94359 -25.65652 -25.15305 -24.22744 -22.27572 -20.21944 -19.63282 -18.97545 -18.40806 -18.03369 -17.89872 -17.75885 -17.03227 -16.78929 -16.42425 -16.23236 -15.92427 -15.69476 -15.65070 -15.51503 -15.02762 -14.68700 -14.54730 -14.36869 -14.03146 -13.92974 -13.86852 -13.56161 -13.50845 -13.45735 -13.20844 -13.18451 -12.89569 -12.76687 -12.68097 -12.58935 -12.46149 -12.28634 -12.18968 -12.11332 -11.79023 -11.66279 -11.57383 -11.49375 -10.77052 -10.57655 -10.53668 -10.45996 -9.48746 -9.37096 -8.13135 -6.24690 1.43449 1.46012 1.51869 1.67214 1.83111 1.96713 2.15231 2.44131 2.56039 2.99543 3.16093 3.19055 3.47513 3.58825 3.75145 3.85026 4.02387 4.06661 4.10361 4.16447 4.26293 4.27318 4.35413 4.40308 4.47752 4.53741 4.54825 4.62262 4.69478 4.70336 4.82599 4.85065 4.87823 4.93446 4.98058 5.07859 5.10670 5.15275 5.15975 5.27502 5.38174 5.66895 5.75913 5.89328 5.98891 6.16599 6.24719 6.59721 6.79565 6.87009 6.99147 7.40232 7.59010 8.93917 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009399 B = 0.003924 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2978.365817 B = 7133.810602 C = 8529.711705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.396 6.396 3 C 0.085 3.915 4 H 0.076 0.924 5 C 0.024 3.976 6 N -0.497 5.497 7 C 0.035 3.965 8 C 0.503 3.497 9 O -0.568 6.568 10 N -0.600 5.600 11 C 0.261 3.739 12 C -0.529 4.529 13 H 0.066 0.934 14 C 0.011 3.989 15 N -0.930 5.930 16 Si 0.953 3.047 17 H -0.260 1.260 18 H -0.289 1.289 19 H -0.279 1.279 20 C 0.118 3.882 21 C -0.043 4.043 22 C 0.246 3.754 23 N -0.486 5.486 24 C 0.094 3.906 25 C -0.163 4.163 26 C 0.102 3.898 27 O -0.581 6.581 28 C -0.102 4.102 29 H 0.102 0.898 30 H 0.035 0.965 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.067 0.933 34 H 0.128 0.872 35 H 0.089 0.911 36 H 0.027 0.973 37 H -0.001 1.001 38 H 0.263 0.737 39 H 0.111 0.889 40 H 0.090 0.910 41 H 0.115 0.885 42 H 0.123 0.877 43 H 0.054 0.946 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.050 0.950 47 H 0.054 0.946 48 H 0.398 0.602 49 H 0.080 0.920 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.874 -6.756 -17.397 20.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.314 6.314 3 C 0.026 3.974 4 H 0.094 0.906 5 C -0.104 4.104 6 N -0.223 5.223 7 C -0.096 4.096 8 C 0.292 3.708 9 O -0.446 6.446 10 N -0.332 5.332 11 C 0.140 3.860 12 C -0.567 4.567 13 H 0.084 0.916 14 C -0.188 4.188 15 N -0.570 5.570 16 Si 0.778 3.222 17 H -0.184 1.184 18 H -0.215 1.215 19 H -0.204 1.204 20 C -0.006 4.006 21 C -0.084 4.084 22 C -0.071 4.071 23 N -0.164 5.164 24 C 0.005 3.995 25 C -0.222 4.222 26 C 0.023 3.977 27 O -0.389 6.389 28 C -0.140 4.140 29 H 0.120 0.880 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.146 0.854 35 H 0.106 0.894 36 H 0.045 0.955 37 H 0.017 0.983 38 H 0.072 0.928 39 H 0.129 0.871 40 H 0.109 0.891 41 H 0.133 0.867 42 H 0.141 0.859 43 H 0.073 0.927 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.069 0.931 47 H 0.073 0.927 48 H 0.248 0.752 49 H 0.099 0.901 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 9.478 -7.146 -16.849 20.610 hybrid contribution -1.300 -0.064 0.963 1.619 sum 8.178 -7.210 -15.886 19.267 Atomic orbital electron populations 1.22948 0.79802 1.03851 1.00504 1.87856 1.21176 1.27460 1.94923 1.23053 0.95595 0.84315 0.94436 0.90587 1.23560 0.95785 0.93280 0.97764 1.64224 1.09235 1.42201 1.06614 1.22370 0.96265 1.01784 0.89177 1.21016 0.87779 0.79241 0.82805 1.90658 1.23880 1.51544 1.78550 1.48096 1.16322 1.59291 1.09449 1.18789 0.88338 0.92471 0.86381 1.21724 1.20004 0.94248 1.20754 0.91583 1.25710 0.98211 0.97029 0.97806 1.70042 1.36091 1.17308 1.33553 0.85690 0.78910 0.79428 0.78138 1.18443 1.21463 1.20430 1.21532 0.83738 0.93086 1.02278 1.19879 0.85493 0.98359 1.04697 1.29157 0.94217 0.91987 0.91753 1.81258 1.13530 1.10559 1.11050 1.21740 0.92459 0.93458 0.91864 1.22353 0.98094 1.00497 1.01215 1.21829 0.92573 0.93355 0.89918 1.86362 1.64234 1.39648 1.48625 1.22433 0.91989 1.00068 0.99542 0.87999 0.94643 0.92704 0.93311 0.91442 0.85384 0.89370 0.95521 0.98305 0.92817 0.87104 0.89143 0.86665 0.85950 0.92697 0.90846 0.90770 0.93133 0.92742 0.75160 0.90104 0.89418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.88 113.37 1.23 1.73 16 2 O -0.40 -9.80 10.44 -148.98 -1.56 -11.36 16 3 C 0.08 2.04 3.51 31.80 0.11 2.15 16 4 H 0.08 1.81 7.89 -2.39 -0.02 1.79 16 5 C 0.02 0.69 5.50 86.65 0.48 1.17 16 6 N -0.50 -12.62 4.60 -838.62 -3.86 -16.47 16 7 C 0.03 0.83 2.58 85.56 0.22 1.05 16 8 C 0.50 17.77 7.36 87.66 0.65 18.41 16 9 O -0.57 -26.27 14.43 -3.01 -0.04 -26.32 16 10 N -0.60 -20.90 2.46 -826.17 -2.03 -22.93 16 11 C 0.26 12.38 5.20 85.63 0.45 12.83 16 12 C -0.53 -26.85 8.92 25.60 0.23 -26.63 16 13 H 0.07 3.19 7.42 -2.91 -0.02 3.16 16 14 C 0.01 0.60 5.46 84.66 0.46 1.07 16 15 N -0.93 -53.40 13.29 21.45 0.28 -53.11 16 16 Si 0.95 42.24 29.54 68.60 2.03 44.26 16 17 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 18 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 19 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 20 C 0.12 2.79 5.13 86.38 0.44 3.23 16 21 C -0.04 -0.95 5.97 28.79 0.17 -0.77 16 22 C 0.25 5.84 15.43 89.43 1.38 7.22 16 23 N -0.49 -13.98 18.54 20.01 0.37 -13.61 16 24 C 0.09 1.86 0.70 3.67 0.00 1.86 16 25 C -0.16 -2.79 6.78 71.98 0.49 -2.30 16 26 C 0.10 1.70 6.07 71.98 0.44 2.14 16 27 O -0.58 -8.32 12.64 -148.98 -1.88 -10.20 16 28 C -0.10 -2.11 5.75 31.47 0.18 -1.93 16 29 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.05 0.93 8.11 -2.39 -0.02 0.91 16 32 H 0.05 1.38 7.91 -2.39 -0.02 1.36 16 33 H 0.07 2.41 6.88 -2.39 -0.02 2.39 16 34 H 0.13 2.34 7.14 -2.39 -0.02 2.32 16 35 H 0.09 1.73 5.11 -2.39 -0.01 1.72 16 36 H 0.03 1.29 7.89 -2.39 -0.02 1.27 16 37 H 0.00 -0.07 7.42 -2.39 -0.02 -0.09 16 38 H 0.26 14.45 8.31 -92.70 -0.77 13.68 16 39 H 0.11 1.78 6.61 -2.39 -0.02 1.76 16 40 H 0.09 2.14 7.89 -2.38 -0.02 2.12 16 41 H 0.12 3.04 7.26 -2.39 -0.02 3.02 16 42 H 0.12 2.25 7.12 -2.38 -0.02 2.24 16 43 H 0.05 0.97 7.46 -2.38 -0.02 0.96 16 44 H 0.07 1.26 7.81 -2.39 -0.02 1.24 16 45 H 0.07 1.07 6.80 -2.39 -0.02 1.05 16 46 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 48 H 0.40 2.27 9.12 -74.06 -0.68 1.60 16 49 H 0.08 1.70 7.62 -2.39 -0.02 1.68 16 50 H 0.09 1.68 7.54 -2.39 -0.02 1.66 16 Total: -1.00 -72.94 404.39 0.52 -72.42 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 0.28 Total: 16.09 kcal Atomic # 6 Polarization: 14.30 SS G_CDS: 6.93 Total: 21.22 kcal Atomic # 7 Polarization: -100.89 SS G_CDS: -5.23 Total: -106.12 kcal Atomic # 8 Polarization: -44.40 SS G_CDS: -3.48 Total: -47.88 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.26 kcal Total: -72.94 0.52 -72.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413034772.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.545 kcal (2) G-P(sol) polarization free energy of solvation -72.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds