Wall clock time and date at job start Sat Apr 11 2020 05:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42904 * 113.99638 * 2 1 4 4 H 1.08998 * 110.87371 * 26.16421 * 3 2 1 5 5 C 1.54903 * 111.02622 * 262.28713 * 3 2 1 6 6 N 1.47842 * 104.79582 * 204.82773 * 5 3 2 7 7 C 1.46901 * 110.99918 * 146.36741 * 6 5 3 8 8 C 1.50698 * 109.47178 * 49.15255 * 7 6 5 9 9 O 1.21279 * 120.00322 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99969 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00178 * 180.02562 * 10 8 7 12 12 C 1.50694 * 109.47115 * 270.00180 * 11 10 8 13 13 H 1.08000 * 120.00563 * 359.97438 * 12 11 10 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46985 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47276 * 299.99832 * 16 14 12 19 19 H 1.48498 * 109.47150 * 60.00043 * 16 14 12 20 20 C 1.46507 * 119.99744 * 359.97438 * 10 8 7 21 21 C 1.52997 * 109.47261 * 269.99948 * 20 10 8 22 22 C 1.47199 * 109.46958 * 180.02562 * 21 20 10 23 23 N 9.77663 * 141.94940 * 309.04306 * 2 1 3 24 24 C 1.47439 * 108.56778 * 24.09582 * 6 5 3 25 25 C 1.53000 * 109.89025 * 239.44119 * 24 6 5 26 26 C 1.53002 * 109.88871 * 118.41878 * 24 6 5 27 27 O 1.42903 * 109.47211 * 179.97438 * 26 24 6 28 28 C 1.54313 * 107.23377 * 359.01288 * 24 6 5 29 29 H 1.08999 * 109.46824 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46919 * 299.99112 * 1 2 3 31 31 H 1.08992 * 109.47173 * 59.99895 * 1 2 3 32 32 H 1.09001 * 110.37038 * 85.99471 * 5 3 2 33 33 H 1.08997 * 110.37323 * 323.65693 * 5 3 2 34 34 H 1.09002 * 109.47041 * 289.15027 * 7 6 5 35 35 H 1.09000 * 109.47098 * 169.15996 * 7 6 5 36 36 H 1.09007 * 109.47078 * 149.99819 * 11 10 8 37 37 H 1.09003 * 109.46733 * 30.00541 * 11 10 8 38 38 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 39 39 H 1.09000 * 109.47148 * 30.00599 * 20 10 8 40 40 H 1.09004 * 109.46943 * 149.99854 * 20 10 8 41 41 H 1.08995 * 109.47315 * 299.99705 * 21 20 10 42 42 H 1.08994 * 109.47068 * 60.00565 * 21 20 10 43 43 H 1.09000 * 109.46813 * 60.00040 * 25 24 6 44 44 H 1.09000 * 109.47390 * 179.97438 * 25 24 6 45 45 H 1.09001 * 109.47314 * 300.00487 * 25 24 6 46 46 H 1.08999 * 109.47020 * 300.00103 * 26 24 6 47 47 H 1.09000 * 109.47135 * 60.00005 * 26 24 6 48 48 H 0.96694 * 113.99671 * 179.97438 * 27 26 24 49 49 H 1.08997 * 110.70733 * 96.10236 * 28 24 6 50 50 H 1.09011 * 110.70304 * 219.16033 * 28 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3331 2.0321 0.4491 5 6 2.4135 1.7344 -1.4328 6 7 3.4905 2.7287 -1.2402 7 6 4.4789 2.6508 -2.3243 8 6 3.7683 2.6556 -3.6532 9 8 2.5578 2.7182 -3.6934 10 7 4.4781 2.5902 -4.7971 11 6 3.7874 2.5954 -6.0890 12 6 3.4754 1.1789 -6.4975 13 1 3.7632 0.3568 -5.8590 14 6 2.8235 0.9322 -7.6872 15 7 2.4734 1.9332 -8.4651 16 14 2.4374 -0.8238 -8.1939 17 1 1.7372 -0.8186 -9.5035 18 1 3.7013 -1.5945 -8.3110 19 1 1.5662 -1.4544 -7.1699 20 6 5.9404 2.5151 -4.7485 21 6 6.5246 3.9290 -4.7672 22 6 7.9939 3.8535 -4.7190 23 7 9.1278 3.7957 -4.6801 24 6 4.1229 2.4880 0.0697 25 6 3.9942 3.7351 0.9468 26 6 5.5997 2.1370 -0.1218 27 8 6.2037 1.9063 1.1526 28 6 3.3822 1.3030 0.7242 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 1.5655 2.1879 -1.9459 33 1 2.7843 0.8774 -1.9952 34 1 5.0562 1.7316 -2.2242 35 1 5.1490 3.5086 -2.2673 36 1 4.4268 3.0581 -6.8410 37 1 2.8598 3.1614 -6.0028 38 1 2.0151 1.7595 -9.3022 39 1 6.2480 2.0069 -3.8346 40 1 6.3046 1.9600 -5.6130 41 1 6.2172 4.4371 -5.6812 42 1 6.1605 4.4840 -3.9027 43 1 2.9397 3.9684 1.0940 44 1 4.4632 3.5497 1.9131 45 1 4.4875 4.5754 0.4583 46 1 5.6832 1.2377 -0.7321 47 1 6.1078 2.9626 -0.6201 48 1 7.1422 1.6778 1.1074 49 1 3.9128 0.3686 0.5414 50 1 3.2567 1.4704 1.7940 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413034828.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:16 Heat of formation + Delta-G solvation = -77.267690 kcal Electronic energy + Delta-G solvation = -31412.559617 eV Core-core repulsion = 27248.132348 eV Total energy + Delta-G solvation = -4164.427270 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.63571 -38.90842 -37.55172 -36.93416 -36.13381 -35.24946 -33.00160 -32.03991 -31.03884 -30.86170 -28.10619 -27.08344 -26.45834 -25.60762 -24.68600 -24.04672 -22.58495 -21.33216 -19.10879 -18.54718 -17.94644 -17.53037 -16.92615 -16.50157 -16.37446 -15.74787 -15.68843 -15.49902 -15.06181 -14.75519 -14.59034 -14.48783 -14.07834 -13.93490 -13.81033 -13.56386 -13.38161 -13.17621 -12.68376 -12.62102 -12.47760 -12.27981 -12.19891 -11.97369 -11.78193 -11.72604 -11.59169 -11.48478 -11.32304 -11.25885 -11.03559 -10.95402 -10.82885 -10.63759 -10.48685 -10.23682 -10.16988 -9.76432 -9.55533 -8.92635 -8.49655 -8.25092 -7.88604 -6.11568 -4.16368 2.67732 2.76169 3.23418 3.28121 3.32367 3.33140 3.38215 3.61753 3.85152 4.06861 4.31609 4.39712 4.49982 4.63396 4.78935 4.89714 4.91925 5.03205 5.06661 5.10166 5.14159 5.22042 5.24140 5.26771 5.33304 5.39578 5.45171 5.48315 5.51299 5.66653 5.76877 5.78345 5.85473 5.88876 5.95622 6.00691 6.01553 6.26741 6.41552 6.78896 6.89119 7.01338 7.23193 7.32926 7.36751 7.40032 7.52423 7.84178 8.14004 8.21145 8.80360 8.95055 9.49306 10.96425 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008020 B = 0.004454 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3490.251363 B = 6284.417041 C = 8917.283314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.380 6.380 3 C 0.070 3.930 4 H 0.076 0.924 5 C 0.036 3.964 6 N -0.493 5.493 7 C 0.017 3.983 8 C 0.507 3.493 9 O -0.517 6.517 10 N -0.597 5.597 11 C 0.247 3.753 12 C -0.529 4.529 13 H 0.056 0.944 14 C 0.064 3.936 15 N -0.893 5.893 16 Si 0.896 3.104 17 H -0.286 1.286 18 H -0.277 1.277 19 H -0.276 1.276 20 C 0.118 3.882 21 C -0.051 4.051 22 C 0.216 3.784 23 N -0.445 5.445 24 C 0.099 3.901 25 C -0.121 4.121 26 C 0.065 3.935 27 O -0.567 6.567 28 C -0.120 4.120 29 H 0.084 0.916 30 H 0.039 0.961 31 H 0.047 0.953 32 H 0.108 0.892 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.100 0.900 36 H 0.035 0.965 37 H 0.047 0.953 38 H 0.264 0.736 39 H 0.071 0.929 40 H 0.095 0.905 41 H 0.118 0.882 42 H 0.107 0.893 43 H 0.058 0.942 44 H 0.063 0.937 45 H 0.057 0.943 46 H 0.049 0.951 47 H 0.055 0.945 48 H 0.379 0.621 49 H 0.077 0.923 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.008 2.153 17.473 18.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.298 6.298 3 C 0.011 3.989 4 H 0.094 0.906 5 C -0.092 4.092 6 N -0.219 5.219 7 C -0.114 4.114 8 C 0.293 3.707 9 O -0.392 6.392 10 N -0.329 5.329 11 C 0.128 3.872 12 C -0.568 4.568 13 H 0.074 0.926 14 C -0.138 4.138 15 N -0.532 5.532 16 Si 0.723 3.277 17 H -0.212 1.212 18 H -0.203 1.203 19 H -0.202 1.202 20 C -0.009 4.009 21 C -0.093 4.093 22 C -0.102 4.102 23 N -0.122 5.122 24 C 0.010 3.990 25 C -0.179 4.179 26 C -0.014 4.014 27 O -0.371 6.371 28 C -0.158 4.158 29 H 0.102 0.898 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.126 0.874 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.118 0.882 36 H 0.052 0.948 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.113 0.887 41 H 0.136 0.864 42 H 0.125 0.875 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.076 0.924 46 H 0.067 0.933 47 H 0.073 0.927 48 H 0.225 0.775 49 H 0.095 0.905 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.224 2.608 17.496 18.186 hybrid contribution 0.191 -1.676 -0.826 1.878 sum 4.415 0.933 16.670 17.270 Atomic orbital electron populations 1.22801 0.80904 1.02668 1.00186 1.87879 1.19871 1.27125 1.94891 1.23429 0.94643 0.84671 0.96121 0.90567 1.23576 0.96171 0.93825 0.95583 1.63661 1.09562 1.49180 0.99509 1.22520 0.95540 1.02326 0.91028 1.20127 0.87984 0.77615 0.84948 1.90672 1.13597 1.48386 1.86518 1.48205 1.04676 1.71716 1.08319 1.19337 0.93224 0.97702 0.76925 1.21356 1.38331 0.92406 1.04727 0.92555 1.24899 0.95335 0.97281 0.96315 1.69907 1.40082 1.30724 1.12443 0.86599 0.78585 0.84713 0.77780 1.21168 1.20271 1.20182 1.21298 0.82187 0.93418 1.03995 1.19915 0.81199 1.01641 1.06524 1.29117 0.95096 0.93126 0.92820 1.81215 1.13006 1.08627 1.09372 1.21715 0.91129 0.95699 0.90480 1.21673 1.02017 0.95811 0.98366 1.22836 0.93938 0.99312 0.85316 1.86453 1.28340 1.92868 1.29438 1.22798 0.94632 0.98229 1.00182 0.89771 0.94193 0.93461 0.87433 0.92659 0.91653 0.88176 0.94750 0.93495 0.92597 0.91031 0.88675 0.86354 0.87525 0.92302 0.91772 0.92418 0.93306 0.92727 0.77453 0.90452 0.90158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.85 101.05 1.10 1.44 16 2 O -0.38 -5.30 10.51 -35.23 -0.37 -5.67 16 3 C 0.07 0.91 3.54 -24.59 -0.09 0.83 16 4 H 0.08 0.91 7.83 -51.93 -0.41 0.50 16 5 C 0.04 0.55 4.68 -2.30 -0.01 0.54 16 6 N -0.49 -6.68 4.84 -217.18 -1.05 -7.73 16 7 C 0.02 0.22 2.95 -4.98 -0.01 0.20 16 8 C 0.51 9.00 7.20 -10.99 -0.08 8.92 16 9 O -0.52 -11.38 13.13 5.56 0.07 -11.31 16 10 N -0.60 -10.49 2.46 -175.06 -0.43 -10.92 16 11 C 0.25 5.69 5.16 -5.20 -0.03 5.66 16 12 C -0.53 -13.86 9.39 -34.44 -0.32 -14.18 16 13 H 0.06 1.48 7.81 -52.49 -0.41 1.07 16 14 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 15 N -0.89 -25.16 13.29 55.43 0.74 -24.42 16 16 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 17 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 C 0.12 1.49 5.17 -4.04 -0.02 1.47 16 21 C -0.05 -0.51 6.03 -29.52 -0.18 -0.68 16 22 C 0.22 2.48 15.43 -20.76 -0.32 2.16 16 23 N -0.44 -6.26 18.54 42.16 0.78 -5.48 16 24 C 0.10 1.12 0.97 -130.62 -0.13 0.99 16 25 C -0.12 -1.25 8.57 37.16 0.32 -0.93 16 26 C 0.06 0.62 4.50 37.16 0.17 0.79 16 27 O -0.57 -5.12 12.67 -35.23 -0.45 -5.57 16 28 C -0.12 -1.42 5.48 -24.91 -0.14 -1.56 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.04 0.36 8.12 -51.93 -0.42 -0.06 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.11 1.92 6.71 -51.93 -0.35 1.57 16 33 H 0.05 0.97 7.54 -51.93 -0.39 0.58 16 34 H 0.07 0.78 5.11 -51.93 -0.27 0.51 16 35 H 0.10 1.03 6.37 -51.93 -0.33 0.70 16 36 H 0.03 0.79 8.07 -51.92 -0.42 0.37 16 37 H 0.05 1.24 7.42 -51.93 -0.39 0.86 16 38 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 39 H 0.07 0.74 6.44 -51.93 -0.33 0.41 16 40 H 0.09 1.30 8.07 -51.93 -0.42 0.88 16 41 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.11 0.84 7.22 -51.93 -0.38 0.47 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.63 7.65 -51.93 -0.40 0.24 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.05 0.48 6.56 -51.93 -0.34 0.14 16 47 H 0.05 0.47 6.87 -51.93 -0.36 0.11 16 48 H 0.38 1.87 9.12 45.56 0.42 2.29 16 49 H 0.08 0.98 7.84 -51.93 -0.41 0.57 16 50 H 0.08 0.88 7.84 -51.92 -0.41 0.47 16 LS Contribution 403.26 15.07 6.08 6.08 Total: -1.00 -33.30 403.26 -6.74 -40.04 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -7.25 Total: 1.66 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: 0.16 Total: 7.29 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: 0.04 Total: -48.55 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -0.74 Total: -22.55 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.30 -6.74 -40.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413034828.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.230 kcal (2) G-P(sol) polarization free energy of solvation -33.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds