Wall clock time and date at job start Sat Apr 11 2020 05:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47442 * 349.75196 * 3 2 1 5 5 N 1.46492 * 109.47140 * 179.97438 * 4 3 2 6 6 C 1.46503 * 120.00276 * 269.99850 * 5 4 3 7 7 C 1.50702 * 109.47035 * 270.00312 * 6 5 4 8 8 H 1.07999 * 120.00319 * 359.97438 * 7 6 5 9 9 C 1.37880 * 119.99679 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99899 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 120.00308 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.46953 * 89.99935 * 11 9 7 13 13 H 1.48502 * 109.47076 * 210.00596 * 11 9 7 14 14 H 1.48504 * 109.47078 * 330.00154 * 11 9 7 15 15 C 1.34776 * 120.00279 * 89.99625 * 5 4 3 16 16 O 1.21281 * 120.00305 * 179.97438 * 15 5 4 17 17 C 1.50706 * 119.99722 * 0.02562 * 15 5 4 18 18 N 1.46905 * 109.46806 * 173.87822 * 17 15 5 19 19 C 1.46842 * 110.99803 * 293.63556 * 18 17 15 20 20 C 1.53042 * 109.51104 * 174.15774 * 19 18 17 21 21 C 1.53119 * 109.27673 * 59.18515 * 20 19 18 22 22 C 1.52998 * 109.52208 * 62.25424 * 21 20 19 23 23 O 1.42898 * 109.47139 * 179.97438 * 22 21 20 24 24 C 1.53002 * 109.52033 * 182.43733 * 21 20 19 25 25 O 1.42903 * 109.46846 * 179.97438 * 24 21 20 26 26 C 1.53117 * 109.16137 * 302.34669 * 21 20 19 27 27 C 1.46849 * 110.98499 * 169.43609 * 18 17 15 28 28 H 1.09000 * 109.46840 * 229.74875 * 3 2 1 29 29 H 1.09003 * 109.46642 * 109.75120 * 3 2 1 30 30 H 1.09000 * 109.46871 * 59.99817 * 4 3 2 31 31 H 1.08995 * 109.46844 * 300.00165 * 4 3 2 32 32 H 1.09005 * 109.46818 * 29.99836 * 6 5 4 33 33 H 1.08995 * 109.47320 * 149.99961 * 6 5 4 34 34 H 0.96996 * 120.00540 * 179.97438 * 10 9 7 35 35 H 1.09001 * 109.47184 * 53.87835 * 17 15 5 36 36 H 1.09001 * 109.46793 * 293.87487 * 17 15 5 37 37 H 1.08998 * 109.46314 * 54.15404 * 19 18 17 38 38 H 1.08996 * 109.46840 * 294.16677 * 19 18 17 39 39 H 1.09003 * 109.50137 * 179.13131 * 20 19 18 40 40 H 1.08999 * 109.50381 * 299.20433 * 20 19 18 41 41 H 1.08999 * 109.46809 * 299.99817 * 22 21 20 42 42 H 1.08996 * 109.47386 * 59.99211 * 22 21 20 43 43 H 0.96701 * 114.00029 * 179.97438 * 23 22 21 44 44 H 1.08999 * 109.47565 * 300.00290 * 24 21 20 45 45 H 1.09002 * 109.46745 * 60.00431 * 24 21 20 46 46 H 0.96703 * 113.99556 * 180.02562 * 25 24 21 47 47 H 1.09006 * 109.50210 * 177.59906 * 26 21 20 48 48 H 1.08997 * 109.49987 * 297.67054 * 26 21 20 49 49 H 1.09003 * 109.47055 * 65.83343 * 27 18 17 50 50 H 1.08996 * 109.45286 * 305.85052 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.4186 0.2566 5 7 4.5836 -1.4180 0.2560 6 6 5.3158 -1.6436 -0.9927 7 6 5.5674 -3.1191 -1.1679 8 1 5.2175 -3.8188 -0.4234 9 6 6.2445 -3.5758 -2.2788 10 7 6.4637 -4.8634 -2.4320 11 14 6.8493 -2.3657 -3.5670 12 1 8.2226 -1.9193 -3.2207 13 1 6.8638 -3.0252 -4.8975 14 1 5.9421 -1.1907 -3.6069 15 6 5.2580 -1.2098 1.4042 16 8 6.4708 -1.2097 1.4038 17 6 4.5049 -0.9782 2.6889 18 7 5.4532 -0.9249 3.8096 19 6 6.0948 -2.2291 4.0186 20 6 7.1771 -2.1001 5.0928 21 6 6.5401 -1.6090 6.3958 22 6 5.5194 -2.6381 6.8855 23 8 4.9261 -2.1790 8.1017 24 6 7.6265 -1.4199 7.4564 25 8 7.0310 -0.9610 8.6716 26 6 5.8373 -0.2731 6.1392 27 6 4.7938 -0.4550 5.0347 28 1 2.9710 0.6648 0.7843 29 1 2.9711 0.3481 -0.9673 30 1 2.7557 -2.0827 -0.5277 31 1 2.7555 -1.7660 1.2238 32 1 4.7261 -1.2735 -1.8315 33 1 6.2679 -1.1144 -0.9564 34 1 6.9397 -5.1848 -3.2136 35 1 3.7993 -1.7936 2.8485 36 1 3.9622 -0.0349 2.6269 37 1 6.5474 -2.5649 3.0856 38 1 5.3474 -2.9540 4.3412 39 1 7.6427 -3.0716 5.2588 40 1 7.9324 -1.3860 4.7645 41 1 4.7448 -2.7695 6.1299 42 1 6.0195 -3.5902 7.0623 43 1 4.2670 -2.7830 8.4703 44 1 8.1301 -2.3701 7.6343 45 1 8.3512 -0.6844 7.1070 46 1 7.6626 -0.8188 9.3899 47 1 5.3456 0.0608 7.0530 48 1 6.5712 0.4704 5.8284 49 1 4.0526 -1.1884 5.3525 50 1 4.3017 0.4977 4.8395 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414035718.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:19 Heat of formation + Delta-G solvation = -93.196391 kcal Electronic energy + Delta-G solvation = -30861.025956 eV Core-core repulsion = 26695.907966 eV Total energy + Delta-G solvation = -4165.117990 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.29309 -39.16913 -37.06829 -36.67057 -36.05835 -35.28017 -33.75052 -32.78644 -31.04479 -30.82932 -29.26663 -27.61937 -26.01081 -25.28025 -24.03623 -23.22823 -22.35531 -21.34879 -18.52543 -18.51941 -17.74167 -17.67403 -16.94326 -16.86710 -16.70494 -16.04985 -15.78697 -15.30074 -15.02373 -14.95289 -14.63430 -14.47117 -14.02131 -13.84849 -13.63356 -13.52603 -13.20854 -12.98872 -12.91040 -12.61069 -12.50879 -12.38902 -12.22281 -12.17402 -12.04280 -11.81958 -11.61702 -11.48707 -11.17047 -11.06999 -10.88370 -10.58074 -10.54279 -10.46735 -10.39967 -10.20735 -9.92720 -9.88731 -9.61151 -9.06083 -8.64191 -8.13835 -7.89830 -6.14003 -4.13534 2.66296 2.74855 3.22974 3.25427 3.30657 3.33202 3.43873 3.89609 4.02359 4.14448 4.25979 4.34683 4.59487 4.83272 4.87553 4.91370 5.00147 5.03991 5.09055 5.19678 5.20536 5.23818 5.29526 5.32711 5.34366 5.36677 5.46919 5.51065 5.51694 5.62984 5.66522 5.73035 5.86423 5.97873 6.00057 6.09101 6.22611 6.25647 6.33212 6.57326 6.84960 7.04254 7.17174 7.22044 7.50902 7.54459 7.57864 7.62890 8.09825 8.40181 8.86236 8.91417 9.45894 10.99218 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010931 B = 0.003174 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2560.802315 B = 8819.693049 C =10603.999613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.216 3.784 3 C -0.051 4.051 4 C 0.117 3.883 5 N -0.595 5.595 6 C 0.216 3.784 7 C -0.531 4.531 8 H 0.074 0.926 9 C 0.073 3.927 10 N -0.896 5.896 11 Si 0.875 3.125 12 H -0.273 1.273 13 H -0.286 1.286 14 H -0.265 1.265 15 C 0.510 3.490 16 O -0.512 6.512 17 C 0.034 3.966 18 N -0.518 5.518 19 C 0.052 3.948 20 C -0.102 4.102 21 C -0.057 4.057 22 C 0.086 3.914 23 O -0.547 6.547 24 C 0.090 3.910 25 O -0.547 6.547 26 C -0.093 4.093 27 C 0.055 3.945 28 H 0.107 0.893 29 H 0.116 0.884 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.031 0.969 33 H 0.040 0.960 34 H 0.265 0.735 35 H 0.058 0.942 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.028 0.972 39 H 0.068 0.932 40 H 0.082 0.918 41 H 0.044 0.956 42 H 0.038 0.962 43 H 0.366 0.634 44 H 0.039 0.961 45 H 0.044 0.956 46 H 0.366 0.634 47 H 0.081 0.919 48 H 0.067 0.933 49 H 0.032 0.968 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.275 8.059 18.077 19.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C -0.102 4.102 3 C -0.092 4.092 4 C -0.009 4.009 5 N -0.328 5.328 6 C 0.096 3.904 7 C -0.569 4.569 8 H 0.092 0.908 9 C -0.129 4.129 10 N -0.535 5.535 11 Si 0.702 3.298 12 H -0.199 1.199 13 H -0.212 1.212 14 H -0.190 1.190 15 C 0.296 3.704 16 O -0.386 6.386 17 C -0.097 4.097 18 N -0.243 5.243 19 C -0.075 4.075 20 C -0.140 4.140 21 C -0.057 4.057 22 C 0.008 3.992 23 O -0.350 6.350 24 C 0.012 3.988 25 O -0.350 6.350 26 C -0.131 4.131 27 C -0.073 4.073 28 H 0.125 0.875 29 H 0.134 0.866 30 H 0.114 0.886 31 H 0.095 0.905 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.046 0.954 39 H 0.087 0.913 40 H 0.101 0.899 41 H 0.062 0.938 42 H 0.056 0.944 43 H 0.211 0.789 44 H 0.057 0.943 45 H 0.062 0.938 46 H 0.211 0.789 47 H 0.100 0.900 48 H 0.086 0.914 49 H 0.051 0.949 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.977 8.720 17.338 19.634 hybrid contribution 0.269 -0.706 -0.310 0.816 sum -2.708 8.015 17.028 19.014 Atomic orbital electron populations 1.81218 1.13030 1.08561 1.09219 1.29074 0.95077 0.93170 0.92919 1.19905 0.81434 1.01499 1.06395 1.21324 0.81943 0.93713 1.03941 1.47907 1.04818 1.70313 1.09748 1.19701 0.92545 0.97933 0.80260 1.21299 1.37209 0.90643 1.07757 0.90773 1.24855 0.95209 0.95051 0.97828 1.69887 1.41333 1.13083 1.29155 0.86869 0.80177 0.81546 0.81183 1.19888 1.21171 1.18970 1.20222 0.88284 0.77460 0.84423 1.90676 1.13545 1.49106 1.85283 1.22091 0.94257 1.02403 0.90942 1.61588 1.30490 1.28449 1.03754 1.22229 0.95998 0.88699 1.00590 1.21540 0.98460 1.01769 0.92213 1.20706 0.94735 0.96395 0.93864 1.22202 0.95132 0.95433 0.86440 1.86696 1.59235 1.49172 1.39850 1.22087 0.94026 0.97368 0.85294 1.86711 1.37259 1.89255 1.21823 1.21444 0.98052 0.95850 0.97725 1.22168 0.95667 0.99810 0.89649 0.87463 0.86637 0.88580 0.90481 0.95089 0.94226 0.92525 0.92457 0.88368 0.88195 0.95414 0.91327 0.89895 0.93781 0.94382 0.78936 0.94288 0.93827 0.78901 0.90020 0.91393 0.94943 0.90814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.27 18.54 42.15 0.78 -5.49 16 2 C 0.22 2.45 15.43 -20.76 -0.32 2.13 16 3 C -0.05 -0.48 6.03 -29.52 -0.18 -0.66 16 4 C 0.12 1.46 5.19 -4.05 -0.02 1.44 16 5 N -0.60 -10.23 2.46 -175.06 -0.43 -10.66 16 6 C 0.22 4.66 4.23 -5.19 -0.02 4.64 16 7 C -0.53 -14.09 9.94 -34.44 -0.34 -14.44 16 8 H 0.07 2.17 8.06 -52.49 -0.42 1.75 16 9 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 10 N -0.90 -26.55 13.96 55.43 0.77 -25.78 16 11 Si 0.88 20.44 27.47 -169.99 -4.67 15.77 16 12 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 13 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 14 H -0.26 -5.70 6.54 56.52 0.37 -5.33 16 15 C 0.51 8.90 7.21 -10.98 -0.08 8.83 16 16 O -0.51 -11.19 14.28 5.56 0.08 -11.11 16 17 C 0.03 0.44 4.18 -4.97 -0.02 0.42 16 18 N -0.52 -6.91 4.35 -236.11 -1.03 -7.94 16 19 C 0.05 0.72 4.87 -3.83 -0.02 0.70 16 20 C -0.10 -1.20 4.88 -26.65 -0.13 -1.33 16 21 C -0.06 -0.61 0.52 -154.39 -0.08 -0.69 16 22 C 0.09 0.88 5.33 37.16 0.20 1.08 16 23 O -0.55 -5.64 10.97 -57.20 -0.63 -6.27 16 24 C 0.09 0.87 5.92 37.16 0.22 1.09 16 25 O -0.55 -5.47 11.05 -57.20 -0.63 -6.11 16 26 C -0.09 -1.04 4.59 -26.65 -0.12 -1.16 16 27 C 0.05 0.61 5.21 -3.83 -0.02 0.59 16 28 H 0.11 0.80 7.41 -51.93 -0.38 0.41 16 29 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.10 1.31 8.07 -51.93 -0.42 0.89 16 31 H 0.08 0.82 6.28 -51.93 -0.33 0.49 16 32 H 0.03 0.62 7.13 -51.93 -0.37 0.25 16 33 H 0.04 0.93 6.85 -51.93 -0.36 0.57 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.06 0.67 7.05 -51.93 -0.37 0.31 16 36 H 0.10 0.99 7.25 -51.93 -0.38 0.61 16 37 H 0.10 1.75 6.05 -51.93 -0.31 1.43 16 38 H 0.03 0.36 6.51 -51.93 -0.34 0.02 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.04 0.46 4.92 -51.93 -0.26 0.21 16 42 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.37 2.35 9.12 45.56 0.42 2.77 16 44 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.37 2.13 9.12 45.56 0.42 2.55 16 47 H 0.08 0.98 7.26 -51.93 -0.38 0.61 16 48 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.03 0.36 6.51 -51.93 -0.34 0.02 16 50 H 0.07 0.74 8.01 -51.93 -0.42 0.32 16 LS Contribution 393.71 15.07 5.93 5.93 Total: -1.00 -35.51 393.71 -7.21 -42.71 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -6.35 Total: 4.37 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -1.03 Total: 4.57 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: 0.10 Total: -49.87 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -1.18 Total: -23.48 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.67 Total: 15.77 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.51 -7.21 -42.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414035718.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.483 kcal (2) G-P(sol) polarization free energy of solvation -35.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds