Wall clock time and date at job start Sat Apr 11 2020 05:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86799 * 119.99782 * 2 1 4 4 H 1.48495 * 109.47153 * 275.30623 * 3 2 1 5 5 H 1.48497 * 109.47517 * 35.31274 * 3 2 1 6 6 H 1.48503 * 109.46882 * 155.31217 * 3 2 1 7 7 C 1.38803 * 119.99780 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99955 * 334.90114 * 7 2 1 9 9 N 1.36933 * 120.00318 * 154.90433 * 7 2 1 10 10 C 1.46506 * 119.99779 * 325.13739 * 9 7 2 11 11 C 1.53006 * 109.46816 * 270.00203 * 10 9 7 12 12 O 1.42899 * 109.47258 * 64.99998 * 11 10 9 13 13 C 1.46496 * 120.00555 * 145.13420 * 9 7 2 14 14 C 1.53046 * 109.45927 * 58.06189 * 13 9 7 15 15 C 1.53185 * 109.31309 * 178.60609 * 14 13 9 16 16 N 1.46923 * 108.76954 * 54.64777 * 15 14 13 17 17 C 1.34782 * 120.62955 * 126.40853 * 16 15 14 18 18 O 1.21276 * 119.99749 * 183.40882 * 17 16 15 19 19 C 1.50702 * 119.99776 * 3.40686 * 17 16 15 20 20 H 1.09000 * 109.67489 * 308.36702 * 19 17 16 21 21 C 1.53347 * 109.66989 * 187.86800 * 19 17 16 22 22 C 1.52925 * 108.67040 * 172.73493 * 21 19 17 23 23 N 1.45752 * 110.48778 * 50.75703 * 22 21 19 24 24 C 1.33353 * 124.10731 * 340.94003 * 23 22 21 25 25 O 1.21279 * 118.24664 * 182.22607 * 24 23 22 26 26 C 1.50178 * 123.51022 * 2.18503 * 24 23 22 27 27 C 1.46923 * 118.73968 * 306.38803 * 16 15 14 28 28 C 1.53042 * 109.46124 * 298.00422 * 13 9 7 29 29 H 0.97002 * 119.99307 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.47391 * 149.99916 * 10 9 7 31 31 H 1.09001 * 109.46783 * 29.99417 * 10 9 7 32 32 H 1.09009 * 109.46635 * 184.99683 * 11 10 9 33 33 H 1.08997 * 109.46724 * 304.99283 * 11 10 9 34 34 H 0.96695 * 113.99861 * 180.02562 * 12 11 10 35 35 H 1.09001 * 109.46145 * 178.03160 * 13 9 7 36 36 H 1.09010 * 109.49366 * 298.56171 * 14 13 9 37 37 H 1.08996 * 109.49955 * 58.65470 * 14 13 9 38 38 H 1.09010 * 109.59659 * 294.85781 * 15 14 13 39 39 H 1.09001 * 109.58690 * 174.43633 * 15 14 13 40 40 H 1.08999 * 109.60822 * 292.48979 * 21 19 17 41 41 H 1.09000 * 109.60285 * 52.81793 * 21 19 17 42 42 H 1.09005 * 109.29766 * 171.06669 * 22 21 19 43 43 H 1.09001 * 109.30218 * 290.43988 * 22 21 19 44 44 H 0.96997 * 117.94726 * 160.92367 * 23 22 21 45 45 H 1.08997 * 109.41507 * 222.31508 * 26 24 23 46 46 H 1.09006 * 109.38639 * 102.56992 * 26 24 23 47 47 H 1.08998 * 109.58500 * 293.81580 * 27 16 15 48 48 H 1.09008 * 109.69977 * 173.46625 * 27 16 15 49 49 H 1.08994 * 109.49696 * 301.33514 * 28 13 9 50 50 H 1.08998 * 109.49762 * 61.40118 * 28 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3856 2.1112 -1.3940 5 1 1.5083 2.6177 0.8093 6 1 3.5994 1.4104 0.5848 7 6 2.0102 -1.2021 -0.0005 8 1 1.5467 -2.0934 0.3958 9 7 3.2826 -1.2580 -0.5035 10 6 3.6544 -0.4247 -1.6498 11 6 3.3826 -1.1904 -2.9463 12 8 1.9778 -1.4145 -3.0816 13 6 4.2722 -2.1508 0.1045 14 6 3.7548 -3.5905 0.0610 15 6 4.8067 -4.5254 0.6660 16 7 5.1460 -4.0467 2.0130 17 6 5.0713 -4.8737 3.0746 18 8 5.2940 -4.4510 4.1893 19 6 4.7111 -6.3236 2.8765 20 1 3.7971 -6.3974 2.2872 21 6 4.5023 -6.9945 4.2395 22 6 3.9632 -8.4074 4.0122 23 7 4.7938 -9.1218 3.0510 24 6 5.6284 -8.5281 2.1970 25 8 6.2395 -9.2240 1.4140 26 6 5.8515 -7.0436 2.1524 27 6 5.5686 -2.6496 2.1806 28 6 4.5082 -1.7357 1.5585 29 1 -0.4849 0.8401 0.0004 30 1 4.7139 -0.1762 -1.5899 31 1 3.0649 0.4920 -1.6389 32 1 3.7408 -0.6071 -3.7946 33 1 3.9024 -2.1481 -2.9184 34 1 1.7318 -1.8965 -3.8830 35 1 5.2092 -2.0849 -0.4486 36 1 2.8308 -3.6624 0.6350 37 1 3.5645 -3.8776 -0.9730 38 1 5.7002 -4.5231 0.0415 39 1 4.4045 -5.5366 0.7280 40 1 5.4525 -7.0467 4.7709 41 1 3.7869 -6.4174 4.8254 42 1 3.9606 -8.9485 4.9585 43 1 2.9433 -8.3471 3.6325 44 1 4.7361 -10.0899 3.0313 45 1 5.8867 -6.7136 1.1143 46 1 6.7972 -6.8050 2.6393 47 1 6.5241 -2.4943 1.6798 48 1 5.6708 -2.4214 3.2416 49 1 4.8543 -0.7026 1.5903 50 1 3.5770 -1.8247 2.1180 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479749786.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:33 Heat of formation + Delta-G solvation = -89.851915 kcal Electronic energy + Delta-G solvation = -31475.840244 eV Core-core repulsion = 27310.867282 eV Total energy + Delta-G solvation = -4164.972962 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.01632 -39.71448 -37.90132 -36.57914 -36.23393 -34.77904 -33.60435 -31.95875 -30.91702 -30.73573 -29.88100 -27.96819 -25.99107 -24.73690 -23.65621 -23.22669 -22.40242 -21.23458 -20.03586 -19.44615 -18.84450 -17.63761 -17.33408 -16.72231 -16.55236 -16.24327 -15.87488 -15.38119 -15.24579 -15.12704 -14.76546 -14.56729 -13.98630 -13.95294 -13.70874 -13.68093 -13.44673 -13.24135 -12.86269 -12.67756 -12.39892 -12.20227 -12.11669 -12.01512 -11.78351 -11.64382 -11.40687 -11.32867 -11.10718 -10.85866 -10.70659 -10.54640 -10.39455 -10.31027 -9.97564 -9.71337 -9.54290 -9.49052 -9.41207 -9.10540 -8.54352 -8.34736 -6.83395 -5.88207 -3.24322 2.34607 2.58583 2.97311 3.00823 3.35361 3.50563 3.52561 4.11221 4.29703 4.33648 4.44586 4.60359 4.75592 4.75772 4.90086 4.98465 5.02862 5.08559 5.19134 5.29097 5.36430 5.36784 5.40342 5.48520 5.58962 5.65430 5.66080 5.81386 5.84522 5.86467 5.89967 5.97694 6.08300 6.12585 6.15548 6.31921 6.38978 6.43307 6.52395 6.71772 6.71951 6.94916 6.98830 7.01000 7.46879 7.90208 8.09946 8.17805 8.42656 8.49886 9.03883 9.82920 10.17280 11.28180 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016511 B = 0.003081 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.451602 B = 9084.356329 C = 9580.359227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.044 3.956 3 Si 0.867 3.133 4 H -0.289 1.289 5 H -0.305 1.305 6 H -0.272 1.272 7 C -0.247 4.247 8 H 0.076 0.924 9 N -0.593 5.593 10 C 0.132 3.868 11 C 0.063 3.937 12 O -0.533 6.533 13 C 0.180 3.820 14 C -0.139 4.139 15 C 0.104 3.896 16 N -0.601 5.601 17 C 0.521 3.479 18 O -0.544 6.544 19 C -0.113 4.113 20 H 0.106 0.894 21 C -0.117 4.117 22 C 0.108 3.892 23 N -0.720 5.720 24 C 0.525 3.475 25 O -0.557 6.557 26 C -0.128 4.128 27 C 0.113 3.887 28 C -0.141 4.141 29 H 0.259 0.741 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.021 0.979 33 H 0.031 0.969 34 H 0.352 0.648 35 H 0.050 0.950 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.071 0.929 44 H 0.400 0.600 45 H 0.110 0.890 46 H 0.105 0.895 47 H 0.061 0.939 48 H 0.087 0.913 49 H 0.068 0.932 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.672 -13.930 3.073 17.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.156 4.156 3 Si 0.699 3.301 4 H -0.218 1.218 5 H -0.233 1.233 6 H -0.197 1.197 7 C -0.375 4.375 8 H 0.093 0.907 9 N -0.314 5.314 10 C 0.006 3.994 11 C -0.018 4.018 12 O -0.334 6.334 13 C 0.072 3.928 14 C -0.179 4.179 15 C -0.020 4.020 16 N -0.334 5.334 17 C 0.309 3.691 18 O -0.422 6.422 19 C -0.134 4.134 20 H 0.124 0.876 21 C -0.155 4.155 22 C -0.016 4.016 23 N -0.372 5.372 24 C 0.312 3.688 25 O -0.435 6.435 26 C -0.168 4.168 27 C -0.010 4.010 28 C -0.181 4.181 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.039 0.961 33 H 0.049 0.951 34 H 0.195 0.805 35 H 0.069 0.931 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.114 0.886 42 H 0.100 0.900 43 H 0.089 0.911 44 H 0.235 0.765 45 H 0.128 0.872 46 H 0.124 0.876 47 H 0.079 0.921 48 H 0.105 0.895 49 H 0.086 0.914 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.945 -13.350 3.861 17.689 hybrid contribution 0.252 0.499 -0.713 0.906 sum 11.197 -12.851 3.148 17.333 Atomic orbital electron populations 1.69915 1.05960 1.26218 1.51516 1.25251 0.94804 0.97218 0.98301 0.87114 0.80721 0.85812 0.76502 1.21758 1.23299 1.19707 1.18444 0.87563 0.94206 1.37328 0.90659 1.44098 1.09366 1.47631 1.30255 1.21344 0.97165 0.94767 0.86130 1.22876 0.82960 0.97940 0.98035 1.86969 1.22182 1.78978 1.45242 1.20305 0.91209 0.89566 0.91679 1.22334 0.98470 0.96103 1.01006 1.21980 0.99040 0.98413 0.82520 1.48132 1.66039 1.11628 1.07569 1.20266 0.77108 0.87396 0.84346 1.90683 1.50470 1.77313 1.23685 1.21452 1.00328 0.92659 0.99006 0.87582 1.21718 1.03890 0.93949 0.95910 1.21472 0.94280 0.93209 0.92615 1.45494 1.43152 1.11026 1.37564 1.19997 0.78451 0.90783 0.79542 1.90777 1.48113 1.64676 1.39964 1.21727 1.00058 0.90947 1.04029 1.21712 0.97262 0.79649 1.02355 1.22372 0.99033 0.98189 0.98511 0.93109 0.93126 0.92005 0.96096 0.95118 0.80474 0.93134 0.90648 0.91088 0.91469 0.90290 0.90120 0.88602 0.89980 0.91089 0.76488 0.87194 0.87645 0.92057 0.89500 0.91388 0.90428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.25 13.97 55.49 0.78 -26.47 16 2 C 0.04 1.26 5.27 -17.43 -0.09 1.17 16 3 Si 0.87 21.97 25.12 -169.99 -4.27 17.70 16 4 H -0.29 -7.25 6.62 56.52 0.37 -6.88 16 5 H -0.30 -7.95 7.11 56.52 0.40 -7.55 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.25 -6.51 8.26 -15.06 -0.12 -6.63 16 8 H 0.08 2.17 6.93 -52.48 -0.36 1.81 16 9 N -0.59 -12.84 2.04 -165.61 -0.34 -13.18 16 10 C 0.13 2.71 4.93 -4.04 -0.02 2.69 16 11 C 0.06 1.12 7.39 37.16 0.27 1.40 16 12 O -0.53 -10.99 13.13 -35.23 -0.46 -11.45 16 13 C 0.18 3.10 2.59 -67.89 -0.18 2.93 16 14 C -0.14 -2.13 5.26 -26.61 -0.14 -2.27 16 15 C 0.10 1.19 5.27 -3.72 -0.02 1.17 16 16 N -0.60 -7.82 2.97 -172.77 -0.51 -8.34 16 17 C 0.52 6.81 6.96 -10.98 -0.08 6.73 16 18 O -0.54 -8.83 15.42 5.56 0.09 -8.75 16 19 C -0.11 -1.07 1.72 -91.55 -0.16 -1.23 16 20 H 0.11 0.94 7.08 -51.93 -0.37 0.57 16 21 C -0.12 -0.95 4.65 -26.59 -0.12 -1.07 16 22 C 0.11 0.64 7.17 -4.48 -0.03 0.60 16 23 N -0.72 -5.52 5.45 -61.38 -0.33 -5.86 16 24 C 0.53 5.52 7.71 -11.87 -0.09 5.43 16 25 O -0.56 -8.06 17.78 5.56 0.10 -7.96 16 26 C -0.13 -1.17 5.01 -28.10 -0.14 -1.31 16 27 C 0.11 1.59 6.43 -3.71 -0.02 1.56 16 28 C -0.14 -2.41 5.34 -26.61 -0.14 -2.56 16 29 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.05 0.89 7.94 -51.93 -0.41 0.48 16 31 H 0.06 1.46 3.12 -51.93 -0.16 1.30 16 32 H 0.02 0.33 8.14 -51.92 -0.42 -0.10 16 33 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.35 5.30 9.12 45.56 0.42 5.72 16 35 H 0.05 0.78 7.81 -51.93 -0.41 0.38 16 36 H 0.07 1.37 6.98 -51.92 -0.36 1.01 16 37 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 39 H 0.08 0.76 4.86 -51.93 -0.25 0.51 16 40 H 0.08 0.70 8.12 -51.93 -0.42 0.28 16 41 H 0.10 0.83 8.02 -51.93 -0.42 0.41 16 42 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 43 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.40 2.62 8.80 -40.82 -0.36 2.26 16 45 H 0.11 0.97 6.21 -51.93 -0.32 0.64 16 46 H 0.11 0.96 8.09 -51.93 -0.42 0.54 16 47 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.09 1.31 7.01 -51.92 -0.36 0.94 16 49 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 50 H 0.08 1.56 7.75 -51.93 -0.40 1.16 16 LS Contribution 381.96 15.07 5.76 5.76 Total: -1.00 -36.01 381.96 -7.45 -43.46 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -7.16 Total: 6.49 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: -1.09 Total: 8.60 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: -0.41 Total: -53.85 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -0.28 Total: -28.16 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.27 Total: 17.70 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.01 -7.45 -43.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479749786.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.393 kcal (2) G-P(sol) polarization free energy of solvation -36.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds