Wall clock time and date at job start Sat Apr 11 2020 05:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86799 * 119.99782 * 2 1 4 4 H 1.48495 * 109.47153 * 275.30623 * 3 2 1 5 5 H 1.48497 * 109.47517 * 35.31274 * 3 2 1 6 6 H 1.48503 * 109.46882 * 155.31217 * 3 2 1 7 7 C 1.38803 * 119.99780 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99955 * 334.90114 * 7 2 1 9 9 N 1.36933 * 120.00318 * 154.90433 * 7 2 1 10 10 C 1.46506 * 119.99779 * 325.13739 * 9 7 2 11 11 C 1.53006 * 109.46816 * 270.00203 * 10 9 7 12 12 O 1.42899 * 109.47258 * 64.99998 * 11 10 9 13 13 C 1.46496 * 120.00555 * 145.13420 * 9 7 2 14 14 C 1.53046 * 109.45927 * 58.06189 * 13 9 7 15 15 C 1.53185 * 109.31309 * 178.60609 * 14 13 9 16 16 N 1.46923 * 108.76954 * 54.64777 * 15 14 13 17 17 C 1.34782 * 120.62955 * 126.40853 * 16 15 14 18 18 O 1.21276 * 119.99749 * 183.40882 * 17 16 15 19 19 C 1.50702 * 119.99776 * 3.40686 * 17 16 15 20 20 H 1.09000 * 109.67489 * 308.36702 * 19 17 16 21 21 C 1.53347 * 109.66989 * 187.86800 * 19 17 16 22 22 C 1.52925 * 108.67040 * 172.73493 * 21 19 17 23 23 N 1.45752 * 110.48778 * 50.75703 * 22 21 19 24 24 C 1.33353 * 124.10731 * 340.94003 * 23 22 21 25 25 O 1.21279 * 118.24664 * 182.22607 * 24 23 22 26 26 C 1.50178 * 123.51022 * 2.18503 * 24 23 22 27 27 C 1.46923 * 118.73968 * 306.38803 * 16 15 14 28 28 C 1.53042 * 109.46124 * 298.00422 * 13 9 7 29 29 H 0.97002 * 119.99307 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.47391 * 149.99916 * 10 9 7 31 31 H 1.09001 * 109.46783 * 29.99417 * 10 9 7 32 32 H 1.09009 * 109.46635 * 184.99683 * 11 10 9 33 33 H 1.08997 * 109.46724 * 304.99283 * 11 10 9 34 34 H 0.96695 * 113.99861 * 180.02562 * 12 11 10 35 35 H 1.09001 * 109.46145 * 178.03160 * 13 9 7 36 36 H 1.09010 * 109.49366 * 298.56171 * 14 13 9 37 37 H 1.08996 * 109.49955 * 58.65470 * 14 13 9 38 38 H 1.09010 * 109.59659 * 294.85781 * 15 14 13 39 39 H 1.09001 * 109.58690 * 174.43633 * 15 14 13 40 40 H 1.08999 * 109.60822 * 292.48979 * 21 19 17 41 41 H 1.09000 * 109.60285 * 52.81793 * 21 19 17 42 42 H 1.09005 * 109.29766 * 171.06669 * 22 21 19 43 43 H 1.09001 * 109.30218 * 290.43988 * 22 21 19 44 44 H 0.96997 * 117.94726 * 160.92367 * 23 22 21 45 45 H 1.08997 * 109.41507 * 222.31508 * 26 24 23 46 46 H 1.09006 * 109.38639 * 102.56992 * 26 24 23 47 47 H 1.08998 * 109.58500 * 293.81580 * 27 16 15 48 48 H 1.09008 * 109.69977 * 173.46625 * 27 16 15 49 49 H 1.08994 * 109.49696 * 301.33514 * 28 13 9 50 50 H 1.08998 * 109.49762 * 61.40118 * 28 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3856 2.1112 -1.3940 5 1 1.5083 2.6177 0.8093 6 1 3.5994 1.4104 0.5848 7 6 2.0102 -1.2021 -0.0005 8 1 1.5467 -2.0934 0.3958 9 7 3.2826 -1.2580 -0.5035 10 6 3.6544 -0.4247 -1.6498 11 6 3.3826 -1.1904 -2.9463 12 8 1.9778 -1.4145 -3.0816 13 6 4.2722 -2.1508 0.1045 14 6 3.7548 -3.5905 0.0610 15 6 4.8067 -4.5254 0.6660 16 7 5.1460 -4.0467 2.0130 17 6 5.0713 -4.8737 3.0746 18 8 5.2940 -4.4510 4.1893 19 6 4.7111 -6.3236 2.8765 20 1 3.7971 -6.3974 2.2872 21 6 4.5023 -6.9945 4.2395 22 6 3.9632 -8.4074 4.0122 23 7 4.7938 -9.1218 3.0510 24 6 5.6284 -8.5281 2.1970 25 8 6.2395 -9.2240 1.4140 26 6 5.8515 -7.0436 2.1524 27 6 5.5686 -2.6496 2.1806 28 6 4.5082 -1.7357 1.5585 29 1 -0.4849 0.8401 0.0004 30 1 4.7139 -0.1762 -1.5899 31 1 3.0649 0.4920 -1.6389 32 1 3.7408 -0.6071 -3.7946 33 1 3.9024 -2.1481 -2.9184 34 1 1.7318 -1.8965 -3.8830 35 1 5.2092 -2.0849 -0.4486 36 1 2.8308 -3.6624 0.6350 37 1 3.5645 -3.8776 -0.9730 38 1 5.7002 -4.5231 0.0415 39 1 4.4045 -5.5366 0.7280 40 1 5.4525 -7.0467 4.7709 41 1 3.7869 -6.4174 4.8254 42 1 3.9606 -8.9485 4.9585 43 1 2.9433 -8.3471 3.6325 44 1 4.7361 -10.0899 3.0313 45 1 5.8867 -6.7136 1.1143 46 1 6.7972 -6.8050 2.6393 47 1 6.5241 -2.4943 1.6798 48 1 5.6708 -2.4214 3.2416 49 1 4.8543 -0.7026 1.5903 50 1 3.5770 -1.8247 2.1180 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479749786.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:32 Heat of formation + Delta-G solvation = -119.733503 kcal Electronic energy + Delta-G solvation = -31477.136007 eV Core-core repulsion = 27310.867282 eV Total energy + Delta-G solvation = -4166.268725 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.90364 -40.69154 -39.25948 -37.78393 -37.25669 -36.28460 -34.48824 -33.73380 -32.40989 -31.90520 -30.61046 -29.56875 -27.13870 -26.01227 -24.66325 -24.52998 -23.50975 -22.68842 -21.40982 -20.21307 -19.98917 -18.57189 -18.31958 -18.29701 -17.91541 -17.27521 -17.16508 -16.76792 -16.32710 -16.22007 -16.09825 -15.40743 -15.29346 -15.09313 -14.86860 -14.81140 -14.59385 -14.45207 -14.38837 -14.08305 -13.98545 -13.53799 -13.18743 -13.16435 -12.86655 -12.81601 -12.64899 -12.50311 -12.26159 -12.17933 -12.03434 -12.00583 -11.81609 -11.71504 -11.38779 -11.28400 -11.15491 -10.61189 -10.57883 -10.41280 -10.06776 -9.61367 -8.66906 -8.04662 -5.33958 1.31789 1.42236 1.50439 1.52823 1.59976 2.00812 2.32688 2.52413 3.10652 3.28704 3.38826 3.59028 3.63582 3.75289 3.77928 3.89241 4.06909 4.14856 4.22280 4.24738 4.34980 4.41368 4.45975 4.49140 4.54437 4.60099 4.65146 4.67638 4.71725 4.76081 4.80885 4.83598 4.89719 4.93693 5.00785 5.05631 5.16890 5.19763 5.21267 5.47260 5.57739 5.64866 5.82315 6.07782 6.29856 6.31336 6.43570 7.11384 7.14280 7.17685 7.25313 7.81519 8.18257 9.16610 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016511 B = 0.003081 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.451602 B = 9084.356329 C = 9580.359227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.019 4.019 3 Si 0.927 3.073 4 H -0.285 1.285 5 H -0.322 1.322 6 H -0.255 1.255 7 C -0.208 4.208 8 H 0.037 0.963 9 N -0.603 5.603 10 C 0.118 3.882 11 C 0.064 3.936 12 O -0.575 6.575 13 C 0.173 3.827 14 C -0.130 4.130 15 C 0.111 3.889 16 N -0.604 5.604 17 C 0.518 3.482 18 O -0.579 6.579 19 C -0.105 4.105 20 H 0.116 0.884 21 C -0.116 4.116 22 C 0.112 3.888 23 N -0.710 5.710 24 C 0.524 3.476 25 O -0.601 6.601 26 C -0.120 4.120 27 C 0.121 3.879 28 C -0.133 4.133 29 H 0.253 0.747 30 H 0.088 0.912 31 H 0.029 0.971 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.374 0.626 35 H 0.087 0.913 36 H 0.035 0.965 37 H 0.074 0.926 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.074 0.926 41 H 0.089 0.911 42 H 0.108 0.892 43 H 0.085 0.915 44 H 0.407 0.593 45 H 0.119 0.881 46 H 0.107 0.893 47 H 0.093 0.907 48 H 0.073 0.927 49 H 0.060 0.940 50 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.463 -15.468 2.139 20.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.214 4.214 3 Si 0.759 3.241 4 H -0.213 1.213 5 H -0.252 1.252 6 H -0.179 1.179 7 C -0.338 4.338 8 H 0.055 0.945 9 N -0.325 5.325 10 C -0.007 4.007 11 C -0.015 4.015 12 O -0.380 6.380 13 C 0.067 3.933 14 C -0.170 4.170 15 C -0.011 4.011 16 N -0.336 5.336 17 C 0.307 3.693 18 O -0.460 6.460 19 C -0.126 4.126 20 H 0.134 0.866 21 C -0.154 4.154 22 C -0.011 4.011 23 N -0.361 5.361 24 C 0.312 3.688 25 O -0.484 6.484 26 C -0.160 4.160 27 C -0.002 4.002 28 C -0.173 4.173 29 H 0.061 0.939 30 H 0.106 0.894 31 H 0.047 0.953 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.221 0.779 35 H 0.105 0.895 36 H 0.054 0.946 37 H 0.093 0.907 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.093 0.907 41 H 0.107 0.893 42 H 0.126 0.874 43 H 0.103 0.897 44 H 0.243 0.757 45 H 0.137 0.863 46 H 0.126 0.874 47 H 0.111 0.889 48 H 0.091 0.909 49 H 0.078 0.922 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 13.776 -14.918 2.916 20.514 hybrid contribution -0.613 0.887 -0.399 1.150 sum 13.163 -14.031 2.517 19.403 Atomic orbital electron populations 1.70052 1.07670 1.26298 1.55736 1.25787 0.95254 1.00296 1.00061 0.86125 0.79825 0.81884 0.76302 1.21327 1.25224 1.17895 1.18242 0.89128 0.92280 1.34139 0.94506 1.44233 1.08553 1.48399 1.31283 1.21538 0.98683 0.93571 0.86904 1.22855 0.81968 0.99192 0.97517 1.86897 1.24168 1.79748 1.47186 1.20609 0.91577 0.89438 0.91650 1.22173 0.98034 0.95905 1.00897 1.22059 0.99128 0.98185 0.81732 1.48237 1.65791 1.11235 1.08351 1.20860 0.76100 0.88676 0.83657 1.90669 1.51977 1.78240 1.25075 1.21443 1.00805 0.90240 1.00158 0.86570 1.21711 1.03614 0.95137 0.94965 1.21594 0.94185 0.91869 0.93465 1.45494 1.42171 1.11628 1.36758 1.20152 0.78316 0.91021 0.79310 1.90763 1.50112 1.65542 1.41956 1.21669 0.99791 0.90067 1.04456 1.21564 0.97286 0.79707 1.01621 1.22238 0.98062 0.98763 0.98266 0.93857 0.89430 0.95289 0.93087 0.92742 0.77938 0.89498 0.94575 0.90748 0.88204 0.88102 0.90704 0.89261 0.87354 0.89692 0.75653 0.86299 0.87447 0.88889 0.90851 0.92175 0.94754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.80 13.97 21.65 0.30 -60.50 16 2 C -0.02 -1.12 5.27 84.86 0.45 -0.67 16 3 Si 0.93 46.70 25.12 68.60 1.72 48.43 16 4 H -0.29 -13.98 6.62 99.48 0.66 -13.33 16 5 H -0.32 -16.95 7.11 99.48 0.71 -16.25 16 6 H -0.25 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.21 -11.21 8.26 84.03 0.69 -10.52 16 8 H 0.04 2.26 6.93 -2.91 -0.02 2.24 16 9 N -0.60 -25.43 2.04 -677.87 -1.38 -26.81 16 10 C 0.12 4.53 4.93 86.38 0.43 4.96 16 11 C 0.06 2.10 7.39 71.98 0.53 2.63 16 12 O -0.58 -23.03 13.13 -148.98 -1.96 -24.99 16 13 C 0.17 5.58 2.59 45.02 0.12 5.70 16 14 C -0.13 -3.76 5.26 30.67 0.16 -3.59 16 15 C 0.11 2.18 5.27 86.36 0.45 2.63 16 16 N -0.60 -14.39 2.97 -818.91 -2.43 -16.83 16 17 C 0.52 12.74 6.96 87.66 0.61 13.35 16 18 O -0.58 -18.51 15.42 -3.02 -0.05 -18.56 16 19 C -0.11 -1.77 1.72 -11.40 -0.02 -1.79 16 20 H 0.12 1.75 7.08 -2.39 -0.02 1.74 16 21 C -0.12 -1.67 4.65 30.69 0.14 -1.52 16 22 C 0.11 0.99 7.17 86.50 0.62 1.61 16 23 N -0.71 -9.08 5.45 -467.30 -2.55 -11.63 16 24 C 0.52 9.88 7.71 87.71 0.68 10.55 16 25 O -0.60 -16.50 17.78 -3.03 -0.05 -16.55 16 26 C -0.12 -1.89 5.01 29.71 0.15 -1.74 16 27 C 0.12 3.17 6.43 86.36 0.56 3.72 16 28 C -0.13 -4.45 5.34 30.67 0.16 -4.28 16 29 H 0.25 15.60 8.31 -92.71 -0.77 14.83 16 30 H 0.09 2.69 7.94 -2.39 -0.02 2.67 16 31 H 0.03 1.33 3.12 -2.39 -0.01 1.32 16 32 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 33 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.37 10.73 9.12 -74.06 -0.68 10.05 16 35 H 0.09 2.25 7.81 -2.39 -0.02 2.23 16 36 H 0.04 1.32 6.98 -2.38 -0.02 1.30 16 37 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 39 H 0.10 1.58 4.86 -2.39 -0.01 1.57 16 40 H 0.07 1.18 8.12 -2.39 -0.02 1.16 16 41 H 0.09 1.44 8.02 -2.39 -0.02 1.42 16 42 H 0.11 0.48 8.14 -2.38 -0.02 0.47 16 43 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.41 4.34 8.80 -92.71 -0.82 3.52 16 45 H 0.12 1.67 6.21 -2.39 -0.01 1.65 16 46 H 0.11 1.70 8.09 -2.38 -0.02 1.68 16 47 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 48 H 0.07 2.15 7.01 -2.38 -0.02 2.14 16 49 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 50 H 0.03 1.42 7.75 -2.39 -0.02 1.40 16 Total: -1.00 -83.64 381.96 -1.22 -84.86 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: -0.56 Total: 21.54 kcal Atomic # 6 Polarization: 15.30 SS G_CDS: 5.73 Total: 21.03 kcal Atomic # 7 Polarization: -109.70 SS G_CDS: -6.06 Total: -115.76 kcal Atomic # 8 Polarization: -58.04 SS G_CDS: -2.06 Total: -60.10 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 1.72 Total: 48.43 kcal Total: -83.64 -1.22 -84.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479749786.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.870 kcal (2) G-P(sol) polarization free energy of solvation -83.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds