Wall clock time and date at job start Sat Apr 11 2020 05:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 120.00096 * 2 1 4 4 H 1.48507 * 109.47374 * 240.00220 * 3 2 1 5 5 H 1.48498 * 109.47104 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47452 * 120.00162 * 3 2 1 7 7 C 1.38813 * 120.00023 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99902 * 157.62969 * 7 2 1 9 9 N 1.36931 * 120.00205 * 337.63548 * 7 2 1 10 10 C 1.46500 * 119.99988 * 324.45505 * 9 7 2 11 11 C 1.53004 * 109.47207 * 270.00072 * 10 9 7 12 12 O 1.42898 * 109.46938 * 64.99955 * 11 10 9 13 13 C 1.46499 * 120.00195 * 144.45299 * 9 7 2 14 14 C 1.53032 * 109.46281 * 294.49543 * 13 9 7 15 15 C 1.53190 * 109.31504 * 181.38333 * 14 13 9 16 16 N 1.46924 * 108.77816 * 305.36927 * 15 14 13 17 17 C 1.34778 * 120.63230 * 233.58892 * 16 15 14 18 18 O 1.21285 * 119.99992 * 185.92755 * 17 16 15 19 19 C 1.50701 * 119.99859 * 5.92016 * 17 16 15 20 20 H 1.08994 * 109.70402 * 40.92433 * 19 17 16 21 21 C 1.53344 * 109.67463 * 161.44192 * 19 17 16 22 22 C 1.52916 * 108.67610 * 187.26688 * 21 19 17 23 23 N 1.45763 * 110.48552 * 309.24325 * 22 21 19 24 24 C 1.33352 * 124.10463 * 19.07766 * 23 22 21 25 25 O 1.21282 * 118.24091 * 177.77542 * 24 23 22 26 26 C 1.50170 * 123.50872 * 357.77552 * 24 23 22 27 27 C 1.46928 * 118.74005 * 53.85514 * 16 15 14 28 28 C 1.53044 * 109.45983 * 54.56516 * 13 9 7 29 29 H 0.97001 * 119.99844 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.46841 * 29.99925 * 10 9 7 31 31 H 1.08996 * 109.47340 * 150.00031 * 10 9 7 32 32 H 1.09007 * 109.46998 * 184.99840 * 11 10 9 33 33 H 1.08995 * 109.47052 * 305.00007 * 11 10 9 34 34 H 0.96697 * 113.99891 * 180.02562 * 12 11 10 35 35 H 1.09003 * 109.46041 * 174.52007 * 13 9 7 36 36 H 1.09005 * 109.49835 * 61.43211 * 14 13 9 37 37 H 1.09001 * 109.52708 * 301.35302 * 14 13 9 38 38 H 1.08999 * 109.58608 * 185.58017 * 15 14 13 39 39 H 1.08996 * 109.70468 * 65.22384 * 15 14 13 40 40 H 1.08996 * 109.60132 * 307.02155 * 21 19 17 41 41 H 1.09004 * 109.60523 * 67.34383 * 21 19 17 42 42 H 1.08994 * 109.30365 * 69.55780 * 22 21 19 43 43 H 1.09006 * 109.30313 * 189.14153 * 22 21 19 44 44 H 0.96993 * 117.94427 * 199.07386 * 23 22 21 45 45 H 1.09007 * 109.40020 * 257.45562 * 26 24 23 46 46 H 1.08997 * 109.40399 * 137.71343 * 26 24 23 47 47 H 1.08996 * 109.58376 * 65.93116 * 27 16 15 48 48 H 1.09004 * 109.58935 * 186.35488 * 27 16 15 49 49 H 1.08996 * 109.49682 * 298.56781 * 28 13 9 50 50 H 1.09006 * 109.49339 * 58.62803 * 28 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0293 -1.2375 -0.3554 9 7 1.4029 -2.3432 0.4523 10 6 0.4606 -2.2774 1.5721 11 6 1.2183 -2.4658 2.8879 12 8 2.1142 -1.3697 3.0828 13 6 1.6953 -3.6299 -0.1843 14 6 1.1841 -3.6131 -1.6266 15 6 1.4606 -4.9717 -2.2781 16 7 2.8922 -5.2757 -2.1487 17 6 3.6282 -5.5901 -3.2331 18 8 4.7811 -5.9433 -3.1020 19 6 3.0187 -5.5028 -4.6086 20 1 2.4015 -4.6073 -4.6809 21 6 4.1303 -5.4501 -5.6635 22 6 3.4972 -5.1797 -7.0290 23 7 2.4025 -6.1097 -7.2769 24 6 1.7783 -6.8012 -6.3227 25 8 0.8524 -7.5156 -6.6441 26 6 2.1605 -6.7427 -4.8716 27 6 3.5050 -5.2363 -0.8139 28 6 3.2069 -3.8692 -0.1797 29 1 -0.4850 0.8401 0.0004 30 1 -0.0344 -1.3063 1.5737 31 1 -0.2851 -3.0652 1.4663 32 1 0.5079 -2.5056 3.7138 33 1 1.7850 -3.3961 2.8509 34 1 2.6293 -1.4232 3.8994 35 1 1.1997 -4.4289 0.3673 36 1 1.6975 -2.8305 -2.1854 37 1 0.1115 -3.4191 -1.6308 38 1 1.1891 -4.9331 -3.3330 39 1 0.8764 -5.7445 -1.7785 40 1 4.8286 -4.6497 -5.4193 41 1 4.6593 -6.4030 -5.6853 42 1 3.1154 -4.1591 -7.0533 43 1 4.2517 -5.3007 -7.8063 44 1 2.1097 -6.2331 -8.1933 45 1 2.7264 -7.6369 -4.6099 46 1 1.2587 -6.6950 -4.2613 47 1 3.0843 -6.0288 -0.1952 48 1 4.5829 -5.3723 -0.9025 49 1 3.7012 -3.0842 -0.7520 50 1 3.5740 -3.8572 0.8466 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479749787.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:36 Heat of formation + Delta-G solvation = -99.018010 kcal Electronic energy + Delta-G solvation = -31402.374806 eV Core-core repulsion = 27237.004372 eV Total energy + Delta-G solvation = -4165.370434 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.95139 -39.65148 -37.72458 -36.48429 -36.11787 -34.64661 -33.53470 -31.95572 -30.67285 -30.34297 -29.85081 -27.74066 -25.86910 -24.65214 -23.72182 -22.97275 -22.49805 -20.72560 -19.98116 -19.40108 -18.81977 -17.57681 -17.31227 -16.57107 -16.48348 -16.21257 -15.76535 -15.30003 -15.04062 -14.87651 -14.54340 -14.41934 -14.01058 -13.77575 -13.74016 -13.67256 -13.24975 -13.21326 -12.87475 -12.53336 -12.18789 -12.11343 -11.99796 -11.81494 -11.61010 -11.32141 -11.26903 -11.15290 -10.92822 -10.79225 -10.63979 -10.54179 -10.33728 -10.07372 -9.93395 -9.86437 -9.54588 -9.44069 -9.36576 -9.07231 -8.44738 -8.36929 -6.54744 -5.70846 -3.24241 2.39330 2.61755 3.02171 3.07168 3.43843 3.49437 3.56390 4.16967 4.35732 4.38260 4.50161 4.56190 4.81796 4.95853 5.02743 5.12119 5.14437 5.24135 5.27625 5.34161 5.42364 5.48173 5.51228 5.51952 5.65026 5.70953 5.76418 5.88373 5.95177 5.99428 6.07792 6.09955 6.24176 6.38003 6.42841 6.48077 6.61933 6.64661 6.75124 6.79977 7.03466 7.05277 7.14033 7.53088 7.69150 7.89661 7.95140 8.21750 8.46728 8.63705 9.24434 9.90120 10.43249 11.30753 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014526 B = 0.003109 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.134431 B = 9003.027343 C = 9539.720188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.018 3.982 3 Si 0.895 3.105 4 H -0.287 1.287 5 H -0.294 1.294 6 H -0.282 1.282 7 C -0.234 4.234 8 H 0.056 0.944 9 N -0.572 5.572 10 C 0.139 3.861 11 C 0.061 3.939 12 O -0.541 6.541 13 C 0.177 3.823 14 C -0.137 4.137 15 C 0.102 3.898 16 N -0.600 5.600 17 C 0.522 3.478 18 O -0.548 6.548 19 C -0.114 4.114 20 H 0.106 0.894 21 C -0.117 4.117 22 C 0.109 3.891 23 N -0.720 5.720 24 C 0.526 3.474 25 O -0.557 6.557 26 C -0.126 4.126 27 C 0.114 3.886 28 C -0.137 4.137 29 H 0.252 0.748 30 H 0.105 0.895 31 H 0.036 0.964 32 H 0.018 0.982 33 H 0.020 0.980 34 H 0.348 0.652 35 H 0.046 0.954 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.082 0.918 44 H 0.400 0.600 45 H 0.106 0.894 46 H 0.109 0.891 47 H 0.061 0.939 48 H 0.084 0.916 49 H 0.070 0.930 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.558 -11.159 -7.251 14.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.181 4.181 3 Si 0.725 3.275 4 H -0.213 1.213 5 H -0.220 1.220 6 H -0.208 1.208 7 C -0.364 4.364 8 H 0.073 0.927 9 N -0.290 5.290 10 C 0.013 3.987 11 C -0.019 4.019 12 O -0.342 6.342 13 C 0.069 3.931 14 C -0.177 4.177 15 C -0.022 4.022 16 N -0.332 5.332 17 C 0.309 3.691 18 O -0.426 6.426 19 C -0.135 4.135 20 H 0.124 0.876 21 C -0.155 4.155 22 C -0.015 4.015 23 N -0.372 5.372 24 C 0.313 3.687 25 O -0.435 6.435 26 C -0.166 4.166 27 C -0.009 4.009 28 C -0.177 4.177 29 H 0.062 0.938 30 H 0.123 0.877 31 H 0.054 0.946 32 H 0.036 0.964 33 H 0.039 0.961 34 H 0.191 0.809 35 H 0.064 0.936 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.111 0.889 41 H 0.101 0.899 42 H 0.090 0.910 43 H 0.100 0.900 44 H 0.235 0.765 45 H 0.124 0.876 46 H 0.127 0.873 47 H 0.079 0.921 48 H 0.103 0.897 49 H 0.088 0.912 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.360 -11.330 -7.675 14.362 hybrid contribution 0.536 0.838 0.400 1.072 sum 4.896 -10.492 -7.275 13.674 Atomic orbital electron populations 1.69941 1.05556 1.25518 1.52701 1.24936 0.94795 0.98339 1.00023 0.86511 0.79253 0.83701 0.78009 1.21327 1.22049 1.20838 1.18695 0.93970 0.85555 1.38132 0.92680 1.43734 1.50654 1.02157 1.32485 1.21075 0.90655 1.03507 0.83497 1.23059 0.91493 0.88029 0.99350 1.86882 1.57304 1.46291 1.43764 1.20322 0.92219 0.89208 0.91348 1.22378 1.02232 0.94229 0.98906 1.22028 0.79902 0.98874 1.01354 1.48159 1.10388 1.67354 1.07339 1.20263 0.86045 0.76952 0.85812 1.90673 1.17710 1.47640 1.86570 1.21463 0.98390 1.00209 0.93456 0.87626 1.21715 0.97083 1.04915 0.91754 1.21476 0.88925 0.93087 0.98052 1.45491 1.36543 1.44601 1.10608 1.19987 0.81571 0.78902 0.88257 1.90776 1.29405 1.40592 1.82758 1.21677 1.02154 0.99335 0.93430 1.21787 0.99008 0.98288 0.81806 1.22389 0.99823 0.94984 1.00459 0.93839 0.87718 0.94580 0.96416 0.96127 0.80932 0.93557 0.90945 0.90926 0.90509 0.91536 0.88902 0.89950 0.91044 0.90013 0.76493 0.87592 0.87303 0.92077 0.89742 0.91173 0.91480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.87 11.39 55.49 0.63 -24.24 16 2 C 0.02 0.49 4.95 -17.43 -0.09 0.40 16 3 Si 0.89 21.89 29.61 -169.99 -5.03 16.85 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.23 -6.01 7.91 -15.06 -0.12 -6.13 16 8 H 0.06 1.46 6.68 -52.48 -0.35 1.11 16 9 N -0.57 -12.89 2.36 -165.62 -0.39 -13.28 16 10 C 0.14 3.07 5.67 -4.04 -0.02 3.05 16 11 C 0.06 1.16 7.39 37.16 0.27 1.44 16 12 O -0.54 -11.21 13.13 -35.23 -0.46 -11.67 16 13 C 0.18 3.23 2.58 -67.89 -0.18 3.06 16 14 C -0.14 -2.32 5.39 -26.62 -0.14 -2.47 16 15 C 0.10 1.29 5.73 -3.71 -0.02 1.27 16 16 N -0.60 -8.21 2.97 -172.51 -0.51 -8.72 16 17 C 0.52 7.07 6.86 -10.98 -0.08 7.00 16 18 O -0.55 -9.00 15.61 5.55 0.09 -8.91 16 19 C -0.11 -1.17 1.71 -91.56 -0.16 -1.32 16 20 H 0.11 1.04 6.89 -51.93 -0.36 0.69 16 21 C -0.12 -1.01 4.66 -26.60 -0.12 -1.14 16 22 C 0.11 0.71 7.17 -4.48 -0.03 0.68 16 23 N -0.72 -6.02 5.45 -61.39 -0.33 -6.35 16 24 C 0.53 5.92 7.71 -11.88 -0.09 5.83 16 25 O -0.56 -8.46 17.78 5.56 0.10 -8.36 16 26 C -0.13 -1.26 5.09 -28.10 -0.14 -1.40 16 27 C 0.11 1.63 6.44 -3.49 -0.02 1.61 16 28 C -0.14 -2.32 5.21 -26.39 -0.14 -2.46 16 29 H 0.25 6.91 8.31 -40.82 -0.34 6.58 16 30 H 0.11 2.72 5.40 -51.93 -0.28 2.44 16 31 H 0.04 0.73 7.97 -51.93 -0.41 0.31 16 32 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.35 5.28 9.12 45.56 0.42 5.70 16 35 H 0.05 0.80 7.84 -51.93 -0.41 0.39 16 36 H 0.07 1.41 7.83 -51.93 -0.41 1.00 16 37 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.08 0.84 4.73 -51.93 -0.25 0.60 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.08 0.76 8.11 -51.93 -0.42 0.34 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.40 2.87 8.80 -40.82 -0.36 2.51 16 45 H 0.11 1.05 8.09 -51.93 -0.42 0.63 16 46 H 0.11 1.06 6.67 -51.93 -0.35 0.71 16 47 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.08 1.27 7.04 -51.93 -0.37 0.91 16 49 H 0.07 1.36 6.89 -51.93 -0.36 1.01 16 50 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 387.74 15.07 5.84 5.84 Total: -1.00 -33.57 387.74 -8.40 -41.97 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -7.26 Total: 7.45 kcal Atomic # 6 Polarization: 10.49 SS G_CDS: -1.08 Total: 9.41 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: -0.60 Total: -52.59 kcal Atomic # 8 Polarization: -28.67 SS G_CDS: -0.28 Total: -28.94 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.57 -8.40 -41.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479749787.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.046 kcal (2) G-P(sol) polarization free energy of solvation -33.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds