Wall clock time and date at job start Sat Apr 11 2020 05:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 120.00096 * 2 1 4 4 H 1.48507 * 109.47374 * 240.00220 * 3 2 1 5 5 H 1.48498 * 109.47104 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47452 * 120.00162 * 3 2 1 7 7 C 1.38813 * 120.00023 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99902 * 157.62969 * 7 2 1 9 9 N 1.36931 * 120.00205 * 337.63548 * 7 2 1 10 10 C 1.46500 * 119.99988 * 324.45505 * 9 7 2 11 11 C 1.53004 * 109.47207 * 270.00072 * 10 9 7 12 12 O 1.42898 * 109.46938 * 64.99955 * 11 10 9 13 13 C 1.46499 * 120.00195 * 144.45299 * 9 7 2 14 14 C 1.53032 * 109.46281 * 294.49543 * 13 9 7 15 15 C 1.53190 * 109.31504 * 181.38333 * 14 13 9 16 16 N 1.46924 * 108.77816 * 305.36927 * 15 14 13 17 17 C 1.34778 * 120.63230 * 233.58892 * 16 15 14 18 18 O 1.21285 * 119.99992 * 185.92755 * 17 16 15 19 19 C 1.50701 * 119.99859 * 5.92016 * 17 16 15 20 20 H 1.08994 * 109.70402 * 40.92433 * 19 17 16 21 21 C 1.53344 * 109.67463 * 161.44192 * 19 17 16 22 22 C 1.52916 * 108.67610 * 187.26688 * 21 19 17 23 23 N 1.45763 * 110.48552 * 309.24325 * 22 21 19 24 24 C 1.33352 * 124.10463 * 19.07766 * 23 22 21 25 25 O 1.21282 * 118.24091 * 177.77542 * 24 23 22 26 26 C 1.50170 * 123.50872 * 357.77552 * 24 23 22 27 27 C 1.46928 * 118.74005 * 53.85514 * 16 15 14 28 28 C 1.53044 * 109.45983 * 54.56516 * 13 9 7 29 29 H 0.97001 * 119.99844 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.46841 * 29.99925 * 10 9 7 31 31 H 1.08996 * 109.47340 * 150.00031 * 10 9 7 32 32 H 1.09007 * 109.46998 * 184.99840 * 11 10 9 33 33 H 1.08995 * 109.47052 * 305.00007 * 11 10 9 34 34 H 0.96697 * 113.99891 * 180.02562 * 12 11 10 35 35 H 1.09003 * 109.46041 * 174.52007 * 13 9 7 36 36 H 1.09005 * 109.49835 * 61.43211 * 14 13 9 37 37 H 1.09001 * 109.52708 * 301.35302 * 14 13 9 38 38 H 1.08999 * 109.58608 * 185.58017 * 15 14 13 39 39 H 1.08996 * 109.70468 * 65.22384 * 15 14 13 40 40 H 1.08996 * 109.60132 * 307.02155 * 21 19 17 41 41 H 1.09004 * 109.60523 * 67.34383 * 21 19 17 42 42 H 1.08994 * 109.30365 * 69.55780 * 22 21 19 43 43 H 1.09006 * 109.30313 * 189.14153 * 22 21 19 44 44 H 0.96993 * 117.94427 * 199.07386 * 23 22 21 45 45 H 1.09007 * 109.40020 * 257.45562 * 26 24 23 46 46 H 1.08997 * 109.40399 * 137.71343 * 26 24 23 47 47 H 1.08996 * 109.58376 * 65.93116 * 27 16 15 48 48 H 1.09004 * 109.58935 * 186.35488 * 27 16 15 49 49 H 1.08996 * 109.49682 * 298.56781 * 28 13 9 50 50 H 1.09006 * 109.49339 * 58.62803 * 28 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0293 -1.2375 -0.3554 9 7 1.4029 -2.3432 0.4523 10 6 0.4606 -2.2774 1.5721 11 6 1.2183 -2.4658 2.8879 12 8 2.1142 -1.3697 3.0828 13 6 1.6953 -3.6299 -0.1843 14 6 1.1841 -3.6131 -1.6266 15 6 1.4606 -4.9717 -2.2781 16 7 2.8922 -5.2757 -2.1487 17 6 3.6282 -5.5901 -3.2331 18 8 4.7811 -5.9433 -3.1020 19 6 3.0187 -5.5028 -4.6086 20 1 2.4015 -4.6073 -4.6809 21 6 4.1303 -5.4501 -5.6635 22 6 3.4972 -5.1797 -7.0290 23 7 2.4025 -6.1097 -7.2769 24 6 1.7783 -6.8012 -6.3227 25 8 0.8524 -7.5156 -6.6441 26 6 2.1605 -6.7427 -4.8716 27 6 3.5050 -5.2363 -0.8139 28 6 3.2069 -3.8692 -0.1797 29 1 -0.4850 0.8401 0.0004 30 1 -0.0344 -1.3063 1.5737 31 1 -0.2851 -3.0652 1.4663 32 1 0.5079 -2.5056 3.7138 33 1 1.7850 -3.3961 2.8509 34 1 2.6293 -1.4232 3.8994 35 1 1.1997 -4.4289 0.3673 36 1 1.6975 -2.8305 -2.1854 37 1 0.1115 -3.4191 -1.6308 38 1 1.1891 -4.9331 -3.3330 39 1 0.8764 -5.7445 -1.7785 40 1 4.8286 -4.6497 -5.4193 41 1 4.6593 -6.4030 -5.6853 42 1 3.1154 -4.1591 -7.0533 43 1 4.2517 -5.3007 -7.8063 44 1 2.1097 -6.2331 -8.1933 45 1 2.7264 -7.6369 -4.6099 46 1 1.2587 -6.6950 -4.2613 47 1 3.0843 -6.0288 -0.1952 48 1 4.5829 -5.3723 -0.9025 49 1 3.7012 -3.0842 -0.7520 50 1 3.5740 -3.8572 0.8466 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479749787.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:35 Heat of formation + Delta-G solvation = -124.756324 kcal Electronic energy + Delta-G solvation = -31403.490903 eV Core-core repulsion = 27237.004372 eV Total energy + Delta-G solvation = -4166.486531 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.89097 -40.68399 -39.11333 -37.70990 -37.26170 -36.20288 -34.46098 -33.59499 -31.99219 -31.84725 -30.64087 -29.39209 -27.02105 -26.07301 -24.77264 -24.28795 -23.63215 -22.20921 -21.47154 -20.23281 -19.97928 -18.52974 -18.34691 -18.16035 -17.84767 -17.30085 -16.80328 -16.73166 -16.20141 -16.10165 -16.04111 -15.56888 -15.28647 -15.15570 -14.75692 -14.72975 -14.57792 -14.45322 -14.15838 -13.98558 -13.63287 -13.20774 -13.09065 -12.97479 -12.87432 -12.78016 -12.66051 -12.50279 -12.36691 -12.18036 -12.07581 -11.97549 -11.78245 -11.58025 -11.48912 -11.31143 -11.09847 -10.61334 -10.54679 -10.34415 -10.07872 -9.61068 -8.43770 -7.69404 -5.24292 1.45323 1.50287 1.50436 1.56651 1.59342 2.00981 2.31840 2.59915 3.27830 3.40650 3.56550 3.60778 3.63618 3.74758 3.86606 3.90870 4.09598 4.18285 4.24547 4.26618 4.39182 4.41527 4.48133 4.56939 4.60033 4.62124 4.71654 4.72881 4.78778 4.85153 4.89178 4.92997 4.95089 4.98838 5.11306 5.16631 5.20598 5.22491 5.48367 5.63111 5.69897 5.79030 5.81561 5.91568 6.28389 6.43444 6.58343 7.13184 7.16423 7.22869 7.32719 8.03170 8.50184 9.26585 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014526 B = 0.003109 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.134431 B = 9003.027343 C = 9539.720188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.027 4.027 3 Si 0.936 3.064 4 H -0.282 1.282 5 H -0.298 1.298 6 H -0.290 1.290 7 C -0.218 4.218 8 H 0.042 0.958 9 N -0.584 5.584 10 C 0.133 3.867 11 C 0.068 3.932 12 O -0.575 6.575 13 C 0.171 3.829 14 C -0.127 4.127 15 C 0.112 3.888 16 N -0.603 5.603 17 C 0.521 3.479 18 O -0.577 6.577 19 C -0.107 4.107 20 H 0.113 0.887 21 C -0.116 4.116 22 C 0.112 3.888 23 N -0.709 5.709 24 C 0.525 3.475 25 O -0.602 6.602 26 C -0.119 4.119 27 C 0.122 3.878 28 C -0.123 4.123 29 H 0.244 0.756 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.043 0.957 33 H 0.038 0.962 34 H 0.372 0.628 35 H 0.067 0.933 36 H 0.040 0.960 37 H 0.058 0.942 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.110 0.890 44 H 0.407 0.593 45 H 0.108 0.892 46 H 0.115 0.885 47 H 0.085 0.915 48 H 0.077 0.923 49 H 0.037 0.963 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.038 -12.679 -7.770 15.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.223 4.223 3 Si 0.767 3.233 4 H -0.208 1.208 5 H -0.225 1.225 6 H -0.217 1.217 7 C -0.349 4.349 8 H 0.059 0.941 9 N -0.304 5.304 10 C 0.006 3.994 11 C -0.011 4.011 12 O -0.380 6.380 13 C 0.065 3.935 14 C -0.167 4.167 15 C -0.010 4.010 16 N -0.335 5.335 17 C 0.310 3.690 18 O -0.457 6.457 19 C -0.128 4.128 20 H 0.131 0.869 21 C -0.154 4.154 22 C -0.011 4.011 23 N -0.360 5.360 24 C 0.312 3.688 25 O -0.484 6.484 26 C -0.159 4.159 27 C -0.001 4.001 28 C -0.163 4.163 29 H 0.053 0.947 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.218 0.782 35 H 0.085 0.915 36 H 0.059 0.941 37 H 0.077 0.923 38 H 0.117 0.883 39 H 0.110 0.890 40 H 0.108 0.892 41 H 0.095 0.905 42 H 0.102 0.898 43 H 0.128 0.872 44 H 0.244 0.756 45 H 0.126 0.874 46 H 0.133 0.867 47 H 0.104 0.896 48 H 0.096 0.904 49 H 0.056 0.944 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.878 -12.844 -8.201 16.001 hybrid contribution 0.472 1.289 0.605 1.501 sum 5.350 -11.555 -7.596 14.827 Atomic orbital electron populations 1.70050 1.06271 1.25140 1.54880 1.25365 0.95281 1.00225 1.01476 0.85843 0.78192 0.81676 0.77611 1.20848 1.22482 1.21668 1.18695 0.93307 0.86800 1.36096 0.94053 1.43900 1.50456 1.02723 1.33282 1.21044 0.91263 1.01976 0.85079 1.22896 0.91765 0.88123 0.98359 1.86800 1.58112 1.47286 1.45771 1.20541 0.93172 0.87736 0.92085 1.22181 1.00688 0.95921 0.97956 1.21998 0.79623 0.96793 1.02620 1.48236 1.10761 1.67234 1.07265 1.20779 0.85592 0.75962 0.86705 1.90662 1.19052 1.48957 1.87073 1.21460 0.98920 1.00614 0.91838 0.86925 1.21717 0.96614 1.04613 0.92431 1.21618 0.88890 0.93091 0.97542 1.45490 1.36172 1.43766 1.10594 1.20131 0.81107 0.78612 0.88931 1.90761 1.31503 1.42764 1.83407 1.21617 1.02247 0.99131 0.92934 1.21661 0.98942 0.97057 0.82462 1.22185 0.98366 0.95716 0.99985 0.94670 0.91622 0.93004 0.93920 0.94390 0.78204 0.91494 0.94115 0.92340 0.88343 0.89042 0.89150 0.90488 0.89759 0.87193 0.75628 0.87424 0.86726 0.89638 0.90442 0.94364 0.91845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.30 11.39 21.65 0.25 -52.06 16 2 C -0.03 -1.49 4.95 84.86 0.42 -1.07 16 3 Si 0.94 45.76 29.61 68.60 2.03 47.80 16 4 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 5 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 6 H -0.29 -14.36 7.11 99.48 0.71 -13.66 16 7 C -0.22 -11.36 7.91 84.03 0.66 -10.70 16 8 H 0.04 2.25 6.68 -2.91 -0.02 2.23 16 9 N -0.58 -26.23 2.36 -677.89 -1.60 -27.83 16 10 C 0.13 5.78 5.67 86.38 0.49 6.27 16 11 C 0.07 2.48 7.39 71.98 0.53 3.01 16 12 O -0.58 -23.23 13.13 -148.98 -1.96 -25.19 16 13 C 0.17 6.06 2.58 45.02 0.12 6.18 16 14 C -0.13 -4.20 5.39 30.67 0.17 -4.03 16 15 C 0.11 2.58 5.73 86.36 0.49 3.08 16 16 N -0.60 -15.27 2.97 -818.07 -2.43 -17.70 16 17 C 0.52 13.21 6.86 87.66 0.60 13.81 16 18 O -0.58 -18.26 15.61 -3.05 -0.05 -18.31 16 19 C -0.11 -1.97 1.71 -11.40 -0.02 -1.99 16 20 H 0.11 1.95 6.89 -2.39 -0.02 1.93 16 21 C -0.12 -1.76 4.66 30.68 0.14 -1.62 16 22 C 0.11 1.12 7.17 86.49 0.62 1.74 16 23 N -0.71 -10.15 5.45 -467.31 -2.55 -12.69 16 24 C 0.52 10.88 7.71 87.71 0.68 11.55 16 25 O -0.60 -17.69 17.78 -3.04 -0.05 -17.74 16 26 C -0.12 -2.14 5.09 29.71 0.15 -1.99 16 27 C 0.12 3.26 6.44 86.51 0.56 3.82 16 28 C -0.12 -4.06 5.21 30.82 0.16 -3.90 16 29 H 0.24 13.80 8.31 -92.71 -0.77 13.03 16 30 H 0.07 3.46 5.40 -2.39 -0.01 3.45 16 31 H 0.05 2.03 7.97 -2.39 -0.02 2.01 16 32 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.37 10.72 9.12 -74.06 -0.68 10.04 16 35 H 0.07 2.12 7.84 -2.39 -0.02 2.10 16 36 H 0.04 1.59 7.83 -2.38 -0.02 1.57 16 37 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.10 1.88 4.73 -2.39 -0.01 1.87 16 39 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.08 1.28 8.11 -2.38 -0.02 1.26 16 42 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.11 0.58 8.14 -2.38 -0.02 0.56 16 44 H 0.41 4.90 8.80 -92.71 -0.82 4.09 16 45 H 0.11 1.93 8.09 -2.38 -0.02 1.91 16 46 H 0.11 1.93 6.67 -2.39 -0.02 1.91 16 47 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 48 H 0.08 2.23 7.04 -2.38 -0.02 2.22 16 49 H 0.04 1.50 6.89 -2.39 -0.02 1.48 16 50 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 Total: -1.00 -74.62 387.74 -1.10 -75.72 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: -0.52 Total: 23.85 kcal Atomic # 6 Polarization: 18.38 SS G_CDS: 5.77 Total: 24.15 kcal Atomic # 7 Polarization: -103.96 SS G_CDS: -6.32 Total: -110.28 kcal Atomic # 8 Polarization: -59.18 SS G_CDS: -2.06 Total: -61.24 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.80 kcal Total: -74.62 -1.10 -75.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479749787.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.036 kcal (2) G-P(sol) polarization free energy of solvation -74.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds