Wall clock time and date at job start Sat Apr 11 2020 05:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86805 * 120.00004 * 2 1 4 4 H 1.48491 * 109.47209 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47089 * 300.00009 * 3 2 1 6 6 H 1.48504 * 109.46849 * 59.99374 * 3 2 1 7 7 C 1.38950 * 120.00349 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99976 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99761 * 0.02562 * 7 2 1 10 10 C 1.34772 * 119.99664 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00407 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99781 * 179.97438 * 10 9 7 13 13 N 1.46894 * 109.47623 * 179.97438 * 12 10 9 14 14 C 1.46895 * 111.00604 * 180.02562 * 13 12 10 15 15 H 1.09000 * 112.90665 * 23.74369 * 14 13 12 16 16 C 1.53784 * 113.61682 * 154.99847 * 14 13 12 17 17 C 1.53787 * 87.07923 * 139.97975 * 16 14 13 18 18 H 1.08998 * 113.61103 * 89.12089 * 17 16 14 19 19 N 1.46502 * 113.61178 * 220.01667 * 17 16 14 20 20 C 1.34778 * 119.99671 * 204.99949 * 19 17 16 21 21 O 1.21280 * 120.00140 * 0.02562 * 20 19 17 22 22 C 1.50700 * 119.99622 * 180.02562 * 20 19 17 23 23 H 1.08991 * 109.63707 * 60.40386 * 22 20 19 24 24 C 1.50293 * 109.63010 * 181.00671 * 22 20 19 25 25 C 1.54603 * 112.95013 * 211.78197 * 24 22 20 26 26 C 1.54353 * 111.45654 * 319.00096 * 25 24 22 27 27 O 1.39962 * 112.56788 * 319.31654 * 26 25 24 28 28 C 1.44216 * 112.37003 * 97.12342 * 27 26 25 29 29 C 1.45990 * 112.10633 * 277.40563 * 28 27 26 30 30 C 1.53778 * 87.08035 * 334.56830 * 17 16 14 31 31 H 0.97003 * 120.00504 * 0.02562 * 1 2 3 32 32 H 0.97001 * 119.99823 * 359.97438 * 9 7 2 33 33 H 1.09001 * 109.47501 * 59.99863 * 12 10 9 34 34 H 1.08999 * 109.47186 * 299.99787 * 12 10 9 35 35 H 1.00905 * 111.00121 * 303.95841 * 13 12 10 36 36 H 1.09004 * 113.61451 * 25.43461 * 16 14 13 37 37 H 1.08994 * 113.61477 * 254.52763 * 16 14 13 38 38 H 0.97000 * 119.99909 * 25.00926 * 19 17 16 39 39 H 1.08996 * 108.78854 * 332.67649 * 24 22 20 40 40 H 1.09003 * 108.78688 * 90.89212 * 24 22 20 41 41 H 1.09006 * 109.08201 * 198.49666 * 25 24 22 42 42 H 1.09001 * 109.03420 * 79.47806 * 25 24 22 43 43 H 1.09005 * 108.86028 * 198.51688 * 26 25 24 44 44 H 1.08992 * 108.86084 * 80.11309 * 26 25 24 45 45 H 1.08996 * 108.95993 * 156.73217 * 28 27 26 46 46 H 1.08997 * 108.95558 * 38.07867 * 28 27 26 47 47 H 1.09003 * 109.03002 * 299.49079 * 29 28 27 48 48 H 1.09002 * 109.03514 * 180.64152 * 29 28 27 49 49 H 1.08999 * 113.61111 * 139.98327 * 30 17 16 50 50 H 1.09004 * 113.61682 * 270.87724 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7080 1.3465 0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8892 2.3965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9974 -3.5577 0.0005 11 8 3.2103 -3.5577 0.0001 12 6 1.2439 -4.8629 0.0011 13 7 2.1984 -5.9794 0.0004 14 6 1.4982 -7.2708 0.0003 15 1 0.4879 -7.2055 -0.4035 16 6 2.3269 -8.4209 -0.5959 17 6 1.7630 -9.3054 0.5287 18 1 0.8251 -9.7964 0.2692 19 7 2.7487 -10.2252 1.1019 20 6 2.3415 -11.3641 1.6966 21 8 1.1592 -11.6277 1.7568 22 6 3.3554 -12.3100 2.2868 23 1 3.9200 -11.8011 3.0679 24 6 2.6533 -13.5070 2.8639 25 6 3.3813 -14.0985 4.0929 26 6 4.9110 -14.1176 3.8877 27 8 5.2743 -14.4959 2.5901 28 6 5.5414 -13.3606 1.7418 29 6 4.3182 -12.7930 1.1823 30 6 1.5777 -8.0147 1.3438 31 1 -0.4851 0.8400 -0.0004 32 1 0.3534 -2.3906 0.0005 33 1 0.6169 -4.9209 -0.8886 34 1 0.6176 -4.9205 0.8914 35 1 2.8328 -5.9124 -0.7815 36 1 3.4035 -8.2636 -0.5294 37 1 2.0028 -8.7218 -1.5921 38 1 3.6943 -10.0145 1.0536 39 1 1.6460 -13.2141 3.1601 40 1 2.5811 -14.2762 2.0950 41 1 3.0312 -15.1175 4.2582 42 1 3.1469 -13.4947 4.9696 43 1 5.3528 -14.8186 4.5960 44 1 5.3059 -13.1216 4.0880 45 1 6.1919 -13.6738 0.9254 46 1 6.0522 -12.5949 2.3256 47 1 3.8171 -13.5516 0.5810 48 1 4.5779 -11.9491 0.5432 49 1 0.6489 -7.9877 1.9135 50 1 2.4494 -7.7463 1.9407 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480202498.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:44 Heat of formation + Delta-G solvation = -129.770761 kcal Electronic energy + Delta-G solvation = -28895.121403 eV Core-core repulsion = 24728.417429 eV Total energy + Delta-G solvation = -4166.703974 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.61515 -40.49593 -39.97615 -39.20263 -36.14800 -35.54259 -35.47095 -33.92536 -33.31522 -33.08328 -28.78977 -28.31827 -26.72515 -26.69311 -25.94065 -24.02720 -22.73477 -21.87490 -21.26702 -20.96947 -20.32520 -19.88986 -18.48374 -17.99117 -17.56468 -17.26811 -16.86681 -16.54648 -16.48708 -16.24083 -16.16613 -15.98801 -15.74794 -15.19304 -15.14995 -14.96121 -14.40158 -14.24941 -14.10792 -13.88439 -13.52094 -13.42267 -13.35655 -13.21126 -13.07789 -12.87568 -12.49104 -12.41196 -12.24295 -12.13359 -12.11530 -11.92809 -11.71657 -11.61776 -11.54808 -11.50797 -11.29798 -10.90029 -10.43196 -10.33069 -10.02305 -10.01608 -9.32644 -8.47153 -5.96072 1.36653 1.42049 1.56281 1.57382 2.04706 2.15145 2.29600 2.98226 2.99656 3.20294 3.48492 3.54285 3.56225 3.68151 3.72072 3.82531 3.95563 4.02819 4.07705 4.14541 4.24663 4.30643 4.41589 4.46159 4.52365 4.55523 4.59330 4.60669 4.70934 4.76026 4.81175 4.85018 4.92526 5.01432 5.07257 5.10236 5.13468 5.16002 5.23080 5.24261 5.31528 5.40874 5.58710 5.92376 6.14055 6.36746 6.43359 6.55956 6.59444 7.12074 7.23992 7.55834 8.10603 8.70419 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026722 B = 0.001563 C = 0.001535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.558748 B =17909.030471 C =18238.421780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.014 4.014 3 Si 0.994 3.006 4 H -0.272 1.272 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.334 4.334 8 H 0.080 0.920 9 N -0.574 5.574 10 C 0.438 3.562 11 O -0.622 6.622 12 C 0.064 3.936 13 N -0.665 5.665 14 C 0.057 3.943 15 H 0.085 0.915 16 C -0.131 4.131 17 C 0.128 3.872 18 H 0.103 0.897 19 N -0.704 5.704 20 C 0.517 3.483 21 O -0.584 6.584 22 C -0.100 4.100 23 H 0.117 0.883 24 C -0.108 4.108 25 C -0.143 4.143 26 C 0.053 3.947 27 O -0.391 6.391 28 C 0.054 3.946 29 C -0.137 4.137 30 C -0.138 4.138 31 H 0.277 0.723 32 H 0.396 0.604 33 H 0.068 0.932 34 H 0.098 0.902 35 H 0.348 0.652 36 H 0.103 0.897 37 H 0.089 0.911 38 H 0.415 0.585 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.067 0.933 42 H 0.078 0.922 43 H 0.087 0.913 44 H 0.065 0.935 45 H 0.104 0.896 46 H 0.074 0.926 47 H 0.066 0.934 48 H 0.098 0.902 49 H 0.060 0.940 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.203 -27.876 3.265 28.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.214 4.214 3 Si 0.818 3.182 4 H -0.197 1.197 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.463 4.463 8 H 0.098 0.902 9 N -0.211 5.211 10 C 0.226 3.774 11 O -0.509 6.509 12 C -0.069 4.069 13 N -0.298 5.298 14 C -0.053 4.053 15 H 0.102 0.898 16 C -0.169 4.169 17 C 0.022 3.978 18 H 0.121 0.879 19 N -0.354 5.354 20 C 0.305 3.695 21 O -0.464 6.464 22 C -0.121 4.121 23 H 0.135 0.865 24 C -0.146 4.146 25 C -0.181 4.181 26 C -0.024 4.024 27 O -0.310 6.310 28 C -0.022 4.022 29 C -0.175 4.175 30 C -0.178 4.178 31 H 0.087 0.913 32 H 0.230 0.770 33 H 0.086 0.914 34 H 0.116 0.884 35 H 0.168 0.832 36 H 0.121 0.879 37 H 0.107 0.893 38 H 0.253 0.747 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.105 0.895 44 H 0.083 0.917 45 H 0.122 0.878 46 H 0.092 0.908 47 H 0.084 0.916 48 H 0.116 0.884 49 H 0.079 0.921 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.142 -28.080 3.905 29.236 hybrid contribution -0.602 1.375 -0.725 1.667 sum 6.539 -26.705 3.180 27.678 Atomic orbital electron populations 1.69678 1.06870 1.29241 1.50391 1.26057 0.96544 1.02476 0.96275 0.84856 0.78056 0.77039 0.78290 1.19699 1.19574 1.19718 1.19721 0.92744 0.84025 1.49854 0.90211 1.41957 1.09342 1.04787 1.65039 1.20877 0.88270 0.86141 0.82144 1.90482 1.15762 1.87970 1.56662 1.21594 0.94181 0.88271 1.02837 1.60191 1.18526 1.00131 1.50919 1.22921 0.97505 0.87213 0.97680 0.89758 1.23525 1.01429 0.93433 0.98519 1.22194 0.93398 0.87771 0.94461 0.87887 1.45874 1.11004 1.20639 1.57915 1.21040 0.89581 0.81884 0.77010 1.90674 1.20111 1.76111 1.59461 1.21050 0.95942 0.95540 0.99574 0.86540 1.21188 0.99335 0.95829 0.98211 1.22619 0.96289 1.01644 0.97552 1.22463 0.93859 1.01354 0.84736 1.87777 1.88150 1.32266 1.22759 1.21712 0.95934 0.88866 0.95639 1.21199 0.96670 1.02232 0.97382 1.23551 1.02380 0.94702 0.97137 0.91318 0.77022 0.91435 0.88379 0.83203 0.87887 0.89253 0.74734 0.92412 0.92663 0.91442 0.90386 0.89479 0.91661 0.87779 0.90774 0.91561 0.88388 0.92130 0.89611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.63 13.05 21.66 0.28 -49.34 16 2 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 3 Si 0.99 42.70 29.55 68.60 2.03 44.73 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 5 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 6 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 7 C -0.33 -18.91 9.68 84.04 0.81 -18.09 16 8 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 9 N -0.57 -29.34 5.29 -306.99 -1.62 -30.96 16 10 C 0.44 20.57 7.82 87.66 0.69 21.26 16 11 O -0.62 -33.88 15.78 -3.06 -0.05 -33.93 16 12 C 0.06 2.13 6.01 85.56 0.51 2.64 16 13 N -0.67 -19.48 6.18 -492.88 -3.05 -22.53 16 14 C 0.06 1.22 4.14 45.44 0.19 1.40 16 15 H 0.08 1.68 7.87 -2.39 -0.02 1.66 16 16 C -0.13 -2.04 7.40 31.12 0.23 -1.81 16 17 C 0.13 2.26 4.24 45.52 0.19 2.45 16 18 H 0.10 2.13 7.47 -2.39 -0.02 2.12 16 19 N -0.70 -10.42 5.10 -440.03 -2.24 -12.67 16 20 C 0.52 9.78 7.15 87.66 0.63 10.41 16 21 O -0.58 -16.42 14.92 -3.03 -0.05 -16.47 16 22 C -0.10 -1.29 2.20 -11.98 -0.03 -1.32 16 23 H 0.12 1.09 7.10 -2.39 -0.02 1.07 16 24 C -0.11 -1.74 4.81 30.27 0.15 -1.59 16 25 C -0.14 -1.71 6.27 31.60 0.20 -1.51 16 26 C 0.05 0.54 6.09 72.44 0.44 0.98 16 27 O -0.39 -5.23 10.35 -140.38 -1.45 -6.69 16 28 C 0.05 0.43 6.11 69.83 0.43 0.86 16 29 C -0.14 -1.26 4.90 28.88 0.14 -1.12 16 30 C -0.14 -2.93 7.68 31.12 0.24 -2.69 16 31 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 32 H 0.40 19.27 7.90 -92.71 -0.73 18.54 16 33 H 0.07 1.97 8.13 -2.39 -0.02 1.95 16 34 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 35 H 0.35 10.44 8.25 -89.69 -0.74 9.70 16 36 H 0.10 1.49 8.12 -2.39 -0.02 1.47 16 37 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.42 3.84 8.09 -92.71 -0.75 3.09 16 39 H 0.06 1.22 6.72 -2.39 -0.02 1.20 16 40 H 0.05 1.00 7.34 -2.39 -0.02 0.99 16 41 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 42 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 44 H 0.07 0.45 6.54 -2.39 -0.02 0.44 16 45 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 46 H 0.07 0.34 7.35 -2.39 -0.02 0.33 16 47 H 0.07 0.82 7.53 -2.39 -0.02 0.80 16 48 H 0.10 0.54 7.18 -2.39 -0.02 0.52 16 49 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 50 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 Total: -1.00 -73.85 397.70 -2.11 -75.96 By element: Atomic # 1 Polarization: 41.54 SS G_CDS: -1.24 Total: 40.30 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: 5.28 Total: 11.60 kcal Atomic # 7 Polarization: -108.87 SS G_CDS: -6.63 Total: -115.50 kcal Atomic # 8 Polarization: -55.53 SS G_CDS: -1.55 Total: -57.08 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -73.85 -2.11 -75.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480202498.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.809 kcal (2) G-P(sol) polarization free energy of solvation -73.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds