Wall clock time and date at job start Sat Apr 11 2020 05:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86801 * 120.00086 * 2 1 4 4 H 1.48507 * 109.47181 * 240.00408 * 3 2 1 5 5 H 1.48494 * 109.47029 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47196 * 120.00619 * 3 2 1 7 7 C 1.38959 * 119.99983 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99579 * 179.97438 * 7 2 1 9 9 N 1.37091 * 119.99838 * 359.97438 * 7 2 1 10 10 C 1.34783 * 120.00001 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99580 * 359.97438 * 10 9 7 12 12 C 1.50694 * 119.99907 * 180.02562 * 10 9 7 13 13 N 1.46906 * 109.47049 * 180.02562 * 12 10 9 14 14 C 1.46895 * 111.00299 * 180.02562 * 13 12 10 15 15 H 1.09005 * 112.84765 * 23.80460 * 14 13 12 16 16 C 1.53781 * 113.61643 * 155.00011 * 14 13 12 17 17 C 1.53779 * 87.08234 * 139.98144 * 16 14 13 18 18 H 1.09000 * 113.61510 * 89.20303 * 17 16 14 19 19 N 1.46498 * 113.61166 * 220.01762 * 17 16 14 20 20 C 1.34777 * 119.99828 * 203.19166 * 19 17 16 21 21 O 1.21283 * 120.00222 * 0.28168 * 20 19 17 22 22 C 1.50703 * 120.00290 * 180.27728 * 20 19 17 23 23 H 1.09000 * 108.96038 * 301.20469 * 22 20 19 24 24 C 1.54199 * 108.97999 * 182.48102 * 22 20 19 25 25 C 1.50621 * 109.06425 * 161.82700 * 24 22 20 26 26 C 1.53812 * 112.46936 * 90.32594 * 25 24 22 27 27 O 1.43986 * 113.41450 * 317.88717 * 26 25 24 28 28 C 1.40325 * 116.58279 * 317.89273 * 27 26 25 29 29 C 1.46291 * 108.97450 * 59.99969 * 22 20 19 30 30 C 1.53783 * 87.17258 * 334.61120 * 17 16 14 31 31 H 0.96995 * 120.00147 * 359.97438 * 1 2 3 32 32 H 0.96996 * 120.00236 * 0.02562 * 9 7 2 33 33 H 1.08996 * 109.47543 * 60.00129 * 12 10 9 34 34 H 1.08999 * 109.47714 * 299.99795 * 12 10 9 35 35 H 1.00901 * 110.99827 * 56.04405 * 13 12 10 36 36 H 1.08996 * 113.61413 * 25.43064 * 16 14 13 37 37 H 1.09000 * 113.68872 * 254.54080 * 16 14 13 38 38 H 0.97001 * 120.00384 * 23.47613 * 19 17 16 39 39 H 1.09001 * 109.53719 * 281.70111 * 24 22 20 40 40 H 1.08997 * 109.54144 * 41.94631 * 24 22 20 41 41 H 1.08998 * 108.88303 * 329.55548 * 25 24 22 42 42 H 1.09007 * 108.88294 * 211.10064 * 25 24 22 43 43 H 1.08995 * 108.69699 * 196.86956 * 26 25 24 44 44 H 1.09004 * 108.69418 * 78.90485 * 26 25 24 45 45 H 1.08999 * 109.59380 * 335.27160 * 28 27 26 46 46 H 1.08999 * 109.72729 * 214.88019 * 28 27 26 47 47 H 1.08999 * 108.93612 * 302.76784 * 29 22 20 48 48 H 1.08994 * 108.93430 * 61.36692 * 29 22 20 49 49 H 1.08995 * 113.61864 * 139.94177 * 30 17 16 50 50 H 1.08999 * 113.60888 * 270.84219 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6964 -1.2126 5 1 1.2831 2.7464 0.0006 6 1 3.1019 1.6963 1.2124 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2102 -3.5579 -0.0010 12 6 1.2437 -4.8629 -0.0011 13 7 2.1983 -5.9796 -0.0004 14 6 1.4980 -7.2709 -0.0015 15 1 0.4888 -7.2047 -0.4081 16 6 2.3276 -8.4210 -0.5964 17 6 1.7619 -9.3055 0.5272 18 1 0.8252 -9.7977 0.2657 19 7 2.7467 -10.2253 1.1019 20 6 2.3367 -11.3462 1.7280 21 8 1.1528 -11.5960 1.8112 22 6 3.3494 -12.2894 2.3248 23 1 4.0215 -12.6316 1.5378 24 6 2.6122 -13.5074 2.9171 25 6 3.5946 -14.6338 3.1041 26 6 4.2566 -14.6121 4.4923 27 8 4.6344 -13.2919 4.9255 28 6 5.2232 -12.4593 3.9615 29 6 4.1269 -11.5743 3.3368 30 6 1.5734 -8.0160 1.3436 31 1 -0.4850 0.8400 0.0004 32 1 0.3534 -2.3907 -0.0005 33 1 0.6174 -4.9205 -0.8913 34 1 0.6167 -4.9210 0.8886 35 1 2.8326 -5.9125 0.7815 36 1 3.4040 -8.2637 -0.5283 37 1 2.0062 -8.7227 -1.5933 38 1 3.6936 -10.0256 1.0355 39 1 2.1787 -13.2381 3.8803 40 1 1.8220 -13.8221 2.2356 41 1 4.3701 -14.5556 2.3422 42 1 3.0723 -15.5821 2.9771 43 1 5.1478 -15.2389 4.4643 44 1 3.5601 -15.0320 5.2181 45 1 5.6870 -13.0689 3.1861 46 1 5.9781 -11.8290 4.4315 47 1 4.5948 -10.7051 2.8744 48 1 3.4547 -11.2348 4.1247 49 1 0.6430 -7.9903 1.9107 50 1 2.4433 -7.7478 1.9431 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480202499.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:48 Heat of formation + Delta-G solvation = -132.365763 kcal Electronic energy + Delta-G solvation = -28914.774406 eV Core-core repulsion = 24747.957904 eV Total energy + Delta-G solvation = -4166.816501 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.64267 -40.49317 -39.92726 -39.16428 -36.13519 -35.76626 -35.46736 -33.93912 -33.28090 -32.97533 -28.63357 -28.12005 -26.95935 -26.64974 -26.02690 -24.13534 -22.54506 -21.55248 -21.44083 -21.04558 -20.58448 -19.88418 -18.52205 -17.93702 -17.54807 -17.25443 -16.91692 -16.78760 -16.39683 -16.33532 -16.12221 -15.81788 -15.63833 -15.32714 -14.87203 -14.69488 -14.45962 -14.35061 -14.20964 -13.87211 -13.52211 -13.43675 -13.39410 -13.24890 -13.12027 -12.82542 -12.43889 -12.43223 -12.33120 -12.16910 -12.13629 -11.95983 -11.81182 -11.74712 -11.58980 -11.49860 -11.36013 -10.88537 -10.34307 -10.28936 -10.04754 -10.01718 -9.24917 -8.46464 -5.95479 1.40151 1.42071 1.53104 1.59605 2.05181 2.15986 2.30012 2.94651 2.97065 3.20744 3.43499 3.49824 3.59557 3.65143 3.76806 3.88898 3.91743 3.97286 4.00689 4.10650 4.31219 4.32762 4.39281 4.48707 4.53999 4.54355 4.57565 4.62471 4.64767 4.76195 4.77506 4.79682 4.97603 4.99346 5.05048 5.07914 5.10169 5.11489 5.17584 5.26104 5.35222 5.40711 5.56951 5.92281 6.13560 6.40501 6.49585 6.55465 6.59971 7.12269 7.23738 7.56129 8.11094 8.70593 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025107 B = 0.001595 C = 0.001542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.960725 B =17545.499477 C =18154.086353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.994 3.006 4 H -0.272 1.272 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.336 4.336 8 H 0.080 0.920 9 N -0.573 5.573 10 C 0.437 3.563 11 O -0.623 6.623 12 C 0.063 3.937 13 N -0.665 5.665 14 C 0.067 3.933 15 H 0.108 0.892 16 C -0.119 4.119 17 C 0.128 3.872 18 H 0.102 0.898 19 N -0.706 5.706 20 C 0.512 3.488 21 O -0.585 6.585 22 C -0.096 4.096 23 H 0.121 0.879 24 C -0.097 4.097 25 C -0.149 4.149 26 C 0.057 3.943 27 O -0.409 6.409 28 C 0.069 3.931 29 C -0.144 4.144 30 C -0.176 4.176 31 H 0.278 0.722 32 H 0.396 0.604 33 H 0.105 0.895 34 H 0.064 0.936 35 H 0.346 0.654 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.415 0.585 39 H 0.052 0.948 40 H 0.063 0.937 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.066 0.934 44 H 0.086 0.914 45 H 0.074 0.926 46 H 0.097 0.903 47 H 0.092 0.908 48 H 0.052 0.948 49 H 0.064 0.936 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.801 -30.086 4.563 31.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.213 4.213 3 Si 0.817 3.183 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.466 4.466 8 H 0.098 0.902 9 N -0.210 5.210 10 C 0.224 3.776 11 O -0.510 6.510 12 C -0.069 4.069 13 N -0.296 5.296 14 C -0.044 4.044 15 H 0.126 0.874 16 C -0.158 4.158 17 C 0.022 3.978 18 H 0.120 0.880 19 N -0.357 5.357 20 C 0.300 3.700 21 O -0.464 6.464 22 C -0.117 4.117 23 H 0.139 0.861 24 C -0.135 4.135 25 C -0.186 4.186 26 C -0.019 4.019 27 O -0.328 6.328 28 C -0.008 4.008 29 C -0.182 4.182 30 C -0.217 4.217 31 H 0.087 0.913 32 H 0.230 0.770 33 H 0.123 0.877 34 H 0.082 0.918 35 H 0.166 0.834 36 H 0.114 0.886 37 H 0.103 0.897 38 H 0.252 0.748 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.099 0.901 42 H 0.108 0.892 43 H 0.085 0.915 44 H 0.104 0.896 45 H 0.092 0.908 46 H 0.115 0.885 47 H 0.110 0.890 48 H 0.071 0.929 49 H 0.083 0.917 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.684 -30.017 4.101 31.024 hybrid contribution -0.424 1.144 0.675 1.395 sum 6.260 -28.872 4.776 29.927 Atomic orbital electron populations 1.69664 1.06859 1.29372 1.50194 1.26053 0.96544 1.02454 0.96217 0.84978 0.77746 0.76585 0.78960 1.19675 1.19536 1.19683 1.19653 0.92762 0.84062 1.50109 0.90221 1.41939 1.09335 1.04755 1.64996 1.20898 0.88280 0.86175 0.82200 1.90482 1.15796 1.87981 1.56718 1.21591 0.94166 0.88175 1.02959 1.60044 1.18394 1.00268 1.50912 1.22986 0.98226 0.87233 0.95974 0.87418 1.23363 1.01323 0.92922 0.98214 1.22210 0.93516 0.87650 0.94416 0.87964 1.45944 1.10857 1.22117 1.56806 1.21279 0.89826 0.81941 0.76931 1.90677 1.20018 1.75744 1.60008 1.20480 0.96339 0.95118 0.99731 0.86146 1.21102 0.97854 0.93769 1.00808 1.21913 0.99255 0.99590 0.97871 1.23094 0.99467 0.83151 0.96167 1.87459 1.80517 1.26304 1.38538 1.22403 0.93660 0.92404 0.92310 1.21139 0.98858 0.99964 0.98216 1.24201 1.02571 0.96998 0.97902 0.91301 0.77002 0.87733 0.91795 0.83377 0.88613 0.89695 0.74815 0.92899 0.91799 0.90088 0.89229 0.91545 0.89578 0.90789 0.88479 0.89003 0.92881 0.91743 0.89382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.73 13.05 21.67 0.28 -49.45 16 2 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 3 Si 0.99 42.86 29.55 68.60 2.03 44.89 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 6 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.34 -19.13 9.68 84.04 0.81 -18.31 16 8 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 9 N -0.57 -29.43 5.29 -306.98 -1.62 -31.05 16 10 C 0.44 20.66 7.82 87.65 0.69 21.34 16 11 O -0.62 -34.20 15.78 -3.07 -0.05 -34.24 16 12 C 0.06 2.13 6.01 85.55 0.51 2.65 16 13 N -0.67 -19.82 6.24 -492.56 -3.07 -22.89 16 14 C 0.07 1.44 4.18 45.50 0.19 1.63 16 15 H 0.11 2.18 7.87 -2.38 -0.02 2.16 16 16 C -0.12 -2.09 7.63 31.12 0.24 -1.85 16 17 C 0.13 2.32 4.21 45.52 0.19 2.51 16 18 H 0.10 2.16 7.50 -2.39 -0.02 2.14 16 19 N -0.71 -10.75 5.20 -440.03 -2.29 -13.04 16 20 C 0.51 9.79 7.08 87.66 0.62 10.41 16 21 O -0.58 -16.52 15.25 -3.04 -0.05 -16.57 16 22 C -0.10 -1.20 2.09 -13.20 -0.03 -1.23 16 23 H 0.12 0.87 7.59 -2.39 -0.02 0.85 16 24 C -0.10 -1.42 4.51 30.23 0.14 -1.28 16 25 C -0.15 -1.28 5.32 30.10 0.16 -1.12 16 26 C 0.06 0.57 6.67 72.26 0.48 1.05 16 27 O -0.41 -6.06 10.17 -143.48 -1.46 -7.52 16 28 C 0.07 0.68 6.38 72.36 0.46 1.14 16 29 C -0.14 -1.64 4.62 28.91 0.13 -1.51 16 30 C -0.18 -3.54 7.51 31.18 0.23 -3.30 16 31 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 32 H 0.40 19.34 7.90 -92.71 -0.73 18.61 16 33 H 0.10 3.17 8.13 -2.39 -0.02 3.15 16 34 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.35 10.83 7.90 -89.69 -0.71 10.13 16 36 H 0.10 1.64 8.11 -2.39 -0.02 1.62 16 37 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.41 4.04 7.94 -92.71 -0.74 3.31 16 39 H 0.05 1.00 7.82 -2.39 -0.02 0.98 16 40 H 0.06 1.13 7.46 -2.39 -0.02 1.11 16 41 H 0.08 0.46 6.83 -2.39 -0.02 0.44 16 42 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 43 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 44 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 45 H 0.07 0.42 6.98 -2.39 -0.02 0.41 16 46 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.09 0.72 7.24 -2.39 -0.02 0.70 16 48 H 0.05 0.90 8.13 -2.39 -0.02 0.88 16 49 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 50 H 0.09 1.77 7.83 -2.39 -0.02 1.75 16 Total: -1.00 -74.30 398.76 -2.13 -76.44 By element: Atomic # 1 Polarization: 42.74 SS G_CDS: -1.20 Total: 41.54 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: 5.30 Total: 11.90 kcal Atomic # 7 Polarization: -109.73 SS G_CDS: -6.70 Total: -116.43 kcal Atomic # 8 Polarization: -56.78 SS G_CDS: -1.55 Total: -58.34 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -74.30 -2.13 -76.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480202499.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.929 kcal (2) G-P(sol) polarization free energy of solvation -74.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds