Wall clock time and date at job start Sat Apr 11 2020 05:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86804 * 119.99891 * 2 1 4 4 H 1.48501 * 109.47044 * 239.99760 * 3 2 1 5 5 H 1.48490 * 109.47090 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46945 * 120.00297 * 3 2 1 7 7 C 1.38956 * 120.00080 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00079 * 179.97438 * 7 2 1 9 9 N 1.37093 * 119.99752 * 359.97438 * 7 2 1 10 10 C 1.34784 * 119.99730 * 179.72207 * 9 7 2 11 11 O 1.21288 * 119.99799 * 0.27897 * 10 9 7 12 12 C 1.50695 * 119.99854 * 180.27787 * 10 9 7 13 13 N 1.46905 * 109.47052 * 180.02562 * 12 10 9 14 14 C 1.46902 * 110.99663 * 179.97438 * 13 12 10 15 15 C 1.53003 * 109.46428 * 180.02562 * 14 13 12 16 16 H 1.08997 * 109.58932 * 309.12316 * 15 14 13 17 17 C 1.53201 * 109.58351 * 188.84321 * 15 14 13 18 18 C 1.53041 * 109.31147 * 185.57694 * 17 15 14 19 19 C 1.53048 * 109.53536 * 61.36633 * 18 17 15 20 20 C 1.53186 * 109.31157 * 298.63195 * 19 18 17 21 21 N 1.46922 * 109.58918 * 69.41085 * 15 14 13 22 22 C 1.34781 * 120.62642 * 353.39573 * 21 15 14 23 23 O 1.21276 * 120.00232 * 6.04575 * 22 21 15 24 24 C 1.50704 * 119.99807 * 186.04473 * 22 21 15 25 25 H 1.09001 * 110.43406 * 298.91410 * 24 22 21 26 26 C 1.54807 * 110.48807 * 176.22041 * 24 22 21 27 27 C 1.54991 * 102.09074 * 220.44328 * 26 24 22 28 28 O 1.44382 * 103.49128 * 37.02506 * 27 26 24 29 29 C 1.43740 * 106.97650 * 319.93620 * 28 27 26 30 30 H 0.97001 * 120.00505 * 359.97438 * 1 2 3 31 31 H 0.96997 * 120.00373 * 0.02562 * 9 7 2 32 32 H 1.08994 * 109.47684 * 300.00328 * 12 10 9 33 33 H 1.09007 * 109.47413 * 60.00439 * 12 10 9 34 34 H 1.00893 * 111.00122 * 303.95767 * 13 12 10 35 35 H 1.08992 * 109.47643 * 300.00275 * 14 13 12 36 36 H 1.08997 * 109.46941 * 60.00941 * 14 13 12 37 37 H 1.08996 * 109.49643 * 305.53244 * 17 15 14 38 38 H 1.08999 * 109.49629 * 65.62827 * 17 15 14 39 39 H 1.09001 * 109.45907 * 181.38359 * 18 17 15 40 40 H 1.08994 * 109.46135 * 301.34483 * 18 17 15 41 41 H 1.08999 * 109.49704 * 58.58286 * 19 18 17 42 42 H 1.08996 * 109.49694 * 178.68037 * 19 18 17 43 43 H 1.09004 * 109.58828 * 174.42343 * 20 19 18 44 44 H 1.09001 * 109.59070 * 294.70920 * 20 19 18 45 45 H 1.09005 * 110.90442 * 338.64162 * 26 24 22 46 46 H 1.09000 * 110.90859 * 102.24444 * 26 24 22 47 47 H 1.08998 * 110.62168 * 278.52020 * 27 26 24 48 48 H 1.09005 * 110.62057 * 155.51982 * 27 26 24 49 49 H 1.09004 * 109.88033 * 267.09636 * 29 28 27 50 50 H 1.08993 * 109.87892 * 145.93687 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2831 2.7464 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9973 -3.5579 -0.0067 11 8 3.2101 -3.5578 -0.0072 12 6 1.2438 -4.8629 -0.0131 13 7 2.1984 -5.9795 -0.0185 14 6 1.4980 -7.2708 -0.0241 15 6 2.5230 -8.4067 -0.0290 16 1 3.2489 -8.2405 -0.8249 17 6 1.8081 -9.7424 -0.2567 18 6 2.8167 -10.8856 -0.1222 19 6 3.4035 -10.8867 1.2913 20 6 4.1364 -9.5640 1.5365 21 7 3.2143 -8.4520 1.2666 22 6 3.0038 -7.4940 2.1910 23 8 2.1581 -6.6453 2.0031 24 6 3.8193 -7.4775 3.4582 25 1 3.6593 -8.3943 4.0257 26 6 3.4647 -6.2377 4.3148 27 6 4.8557 -5.7930 4.8338 28 8 5.7308 -6.0498 3.7145 29 6 5.3152 -7.2977 3.1346 30 1 -0.4851 0.8400 0.0004 31 1 0.3534 -2.3907 -0.0005 32 1 0.6174 -4.9252 0.8768 33 1 0.6168 -4.9162 -0.9032 34 1 2.8333 -5.9086 -0.7994 35 1 0.8734 -7.3493 0.8656 36 1 0.8729 -7.3412 -0.9143 37 1 1.0192 -9.8640 0.4854 38 1 1.3734 -9.7566 -1.2562 39 1 2.3156 -11.8356 -0.3080 40 1 3.6183 -10.7500 -0.8481 41 1 2.5995 -10.9974 2.0189 42 1 4.1042 -11.7153 1.3937 43 1 4.4708 -9.5182 2.5730 44 1 4.9972 -9.4944 0.8714 45 1 3.0107 -5.4587 3.7021 46 1 2.8099 -6.5109 5.1422 47 1 5.1518 -6.3888 5.6971 48 1 4.8515 -4.7315 5.0819 49 1 5.8892 -8.1170 3.5676 50 1 5.4602 -7.2710 2.0547 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480339118.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:54 Heat of formation + Delta-G solvation = -79.601004 kcal Electronic energy + Delta-G solvation = -31616.736673 eV Core-core repulsion = 27452.208223 eV Total energy + Delta-G solvation = -4164.528450 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.81955 -38.96110 -37.99184 -37.10692 -35.23432 -33.71439 -33.10479 -32.10171 -31.42537 -31.00901 -29.17503 -27.51556 -25.66338 -24.46427 -23.38691 -23.18606 -22.56297 -21.34261 -20.58500 -19.26761 -18.75793 -17.70166 -17.03345 -16.53687 -16.17987 -15.94284 -15.72129 -15.19221 -14.99503 -14.75156 -14.61667 -14.36607 -14.14213 -13.91018 -13.78767 -13.42369 -13.22964 -13.07556 -12.83623 -12.73651 -12.50469 -12.12050 -11.92382 -11.66298 -11.48265 -11.40361 -11.32282 -11.28498 -11.20926 -11.09967 -10.98125 -10.88519 -10.77975 -10.66135 -10.35106 -10.08512 -9.71122 -9.35782 -8.73162 -8.50184 -8.17942 -7.81489 -7.49237 -6.28337 -3.68266 2.92342 3.03377 3.28901 3.32804 3.38198 3.95847 4.11761 4.23146 4.36124 4.40499 4.44011 4.54365 4.65923 4.74376 4.92213 4.96291 5.03541 5.06685 5.17005 5.19490 5.24719 5.28251 5.38535 5.40806 5.46805 5.51905 5.54743 5.63210 5.66630 5.68092 5.70807 5.76511 5.76954 5.82470 5.87064 5.99996 6.07778 6.23242 6.33570 6.36751 6.50333 6.68010 6.88066 7.55725 7.58931 7.67440 8.00731 8.22082 8.59671 8.78201 9.32765 9.71515 10.24818 10.89930 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012987 B = 0.003284 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.504619 B = 8523.437754 C =10070.615743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.020 3.980 3 Si 0.929 3.071 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.295 4.295 8 H 0.101 0.899 9 N -0.570 5.570 10 C 0.448 3.552 11 O -0.581 6.581 12 C 0.064 3.936 13 N -0.635 5.635 14 C 0.070 3.930 15 C 0.154 3.846 16 H 0.068 0.932 17 C -0.129 4.129 18 C -0.118 4.118 19 C -0.135 4.135 20 C 0.108 3.892 21 N -0.613 5.613 22 C 0.513 3.487 23 O -0.458 6.458 24 C -0.143 4.143 25 H 0.098 0.902 26 C -0.139 4.139 27 C 0.047 3.953 28 O -0.370 6.370 29 C 0.062 3.938 30 H 0.270 0.730 31 H 0.391 0.609 32 H 0.086 0.914 33 H 0.031 0.969 34 H 0.328 0.672 35 H 0.093 0.907 36 H 0.015 0.985 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.081 0.919 44 H 0.066 0.934 45 H 0.104 0.896 46 H 0.078 0.922 47 H 0.056 0.944 48 H 0.095 0.905 49 H 0.059 0.941 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.139 -24.960 5.289 25.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.181 4.181 3 Si 0.756 3.244 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.424 4.424 8 H 0.118 0.882 9 N -0.207 5.207 10 C 0.234 3.766 11 O -0.464 6.464 12 C -0.069 4.069 13 N -0.267 5.267 14 C -0.060 4.060 15 C 0.051 3.949 16 H 0.086 0.914 17 C -0.168 4.168 18 C -0.156 4.156 19 C -0.173 4.173 20 C -0.016 4.016 21 N -0.350 5.350 22 C 0.299 3.701 23 O -0.327 6.327 24 C -0.165 4.165 25 H 0.116 0.884 26 C -0.177 4.177 27 C -0.029 4.029 28 O -0.288 6.288 29 C -0.016 4.016 30 H 0.080 0.920 31 H 0.224 0.776 32 H 0.104 0.896 33 H 0.049 0.951 34 H 0.147 0.853 35 H 0.111 0.889 36 H 0.032 0.968 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.091 0.909 43 H 0.099 0.901 44 H 0.084 0.916 45 H 0.123 0.877 46 H 0.097 0.903 47 H 0.074 0.926 48 H 0.114 0.886 49 H 0.077 0.923 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.606 -24.132 5.815 25.247 hybrid contribution -0.643 0.486 -0.847 1.170 sum 3.962 -23.646 4.967 24.485 Atomic orbital electron populations 1.69609 1.05877 1.27968 1.51333 1.25220 0.95599 0.99541 0.97731 0.85951 0.78735 0.80703 0.78999 1.20033 1.21084 1.19965 1.19639 0.93261 0.82397 1.47141 0.88161 1.41856 1.09081 1.04590 1.65186 1.19920 0.88392 0.84783 0.83541 1.90509 1.13861 1.87160 1.54902 1.21498 0.94234 0.90751 1.00391 1.60301 1.18456 0.99397 1.48585 1.22156 0.95157 0.88518 1.00142 1.21181 0.94101 0.94546 0.85106 0.91412 1.21938 0.98393 0.94166 1.02331 1.21489 0.98851 0.98394 0.96823 1.21923 1.00506 0.97164 0.97725 1.21701 0.92245 0.85947 1.01676 1.47809 1.45924 1.25323 1.15935 1.20017 0.84932 0.80982 0.84143 1.90832 1.31764 1.35506 1.74634 1.22724 0.96461 1.01021 0.96286 0.88415 1.23122 0.97774 0.97495 0.99338 1.23577 0.88325 1.01939 0.89101 1.88941 1.55354 1.39031 1.45503 1.23135 0.91461 0.87198 0.99782 0.92029 0.77612 0.89603 0.95131 0.85299 0.88864 0.96764 0.91403 0.90895 0.91782 0.91736 0.91562 0.90924 0.90065 0.91612 0.87718 0.90326 0.92582 0.88644 0.92317 0.89419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.84 13.05 55.50 0.72 -25.12 16 2 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 3 Si 0.93 22.08 29.55 -169.99 -5.02 17.06 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 7 C -0.29 -8.70 9.68 -14.93 -0.14 -8.84 16 8 H 0.10 3.10 7.16 -52.49 -0.38 2.72 16 9 N -0.57 -15.51 5.29 -10.96 -0.06 -15.57 16 10 C 0.45 11.53 7.82 -10.98 -0.09 11.44 16 11 O -0.58 -16.95 15.78 5.55 0.09 -16.86 16 12 C 0.06 1.29 5.78 -4.98 -0.03 1.26 16 13 N -0.64 -11.53 3.55 -115.06 -0.41 -11.94 16 14 C 0.07 0.98 4.30 -3.82 -0.02 0.96 16 15 C 0.15 1.72 3.07 -67.60 -0.21 1.51 16 16 H 0.07 0.78 8.12 -51.93 -0.42 0.36 16 17 C -0.13 -1.08 5.36 -26.61 -0.14 -1.22 16 18 C -0.12 -0.78 5.88 -26.69 -0.16 -0.93 16 19 C -0.13 -0.83 6.08 -26.61 -0.16 -0.99 16 20 C 0.11 0.82 5.35 -3.69 -0.02 0.80 16 21 N -0.61 -6.77 2.91 -165.19 -0.48 -7.25 16 22 C 0.51 7.11 6.57 -10.98 -0.07 7.04 16 23 O -0.46 -8.05 8.96 5.56 0.05 -8.00 16 24 C -0.14 -1.65 2.49 -90.24 -0.22 -1.87 16 25 H 0.10 0.83 7.52 -51.93 -0.39 0.44 16 26 C -0.14 -1.81 6.50 -24.73 -0.16 -1.97 16 27 C 0.05 0.59 7.72 38.21 0.29 0.88 16 28 O -0.37 -5.69 11.52 -35.23 -0.41 -6.10 16 29 C 0.06 0.74 5.89 37.74 0.22 0.96 16 30 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 31 H 0.39 10.25 7.90 -40.82 -0.32 9.92 16 32 H 0.09 1.73 7.88 -51.93 -0.41 1.32 16 33 H 0.03 0.57 8.14 -51.92 -0.42 0.14 16 34 H 0.33 6.20 8.41 -39.30 -0.33 5.87 16 35 H 0.09 1.44 6.30 -51.93 -0.33 1.11 16 36 H 0.01 0.19 8.13 -51.93 -0.42 -0.23 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.08 0.52 5.24 -51.93 -0.27 0.25 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.10 1.81 6.93 -51.93 -0.36 1.45 16 46 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 49 H 0.06 0.52 7.97 -51.93 -0.41 0.11 16 50 H 0.09 1.15 7.20 -51.93 -0.37 0.78 16 LS Contribution 386.53 15.07 5.82 5.82 Total: -1.00 -35.16 386.53 -8.89 -44.06 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: -8.20 Total: 14.40 kcal Atomic # 6 Polarization: 10.49 SS G_CDS: -1.00 Total: 9.49 kcal Atomic # 7 Polarization: -59.65 SS G_CDS: -0.22 Total: -59.88 kcal Atomic # 8 Polarization: -30.69 SS G_CDS: -0.27 Total: -30.96 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.16 -8.89 -44.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480339118.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.544 kcal (2) G-P(sol) polarization free energy of solvation -35.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds