Wall clock time and date at job start Sat Apr 11 2020 05:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86804 * 119.99891 * 2 1 4 4 H 1.48501 * 109.47044 * 239.99760 * 3 2 1 5 5 H 1.48490 * 109.47090 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46945 * 120.00297 * 3 2 1 7 7 C 1.38956 * 120.00080 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00079 * 179.97438 * 7 2 1 9 9 N 1.37093 * 119.99752 * 359.97438 * 7 2 1 10 10 C 1.34784 * 119.99730 * 179.72207 * 9 7 2 11 11 O 1.21288 * 119.99799 * 0.27897 * 10 9 7 12 12 C 1.50695 * 119.99854 * 180.27787 * 10 9 7 13 13 N 1.46905 * 109.47052 * 180.02562 * 12 10 9 14 14 C 1.46902 * 110.99663 * 179.97438 * 13 12 10 15 15 C 1.53003 * 109.46428 * 180.02562 * 14 13 12 16 16 H 1.08997 * 109.58932 * 309.12316 * 15 14 13 17 17 C 1.53201 * 109.58351 * 188.84321 * 15 14 13 18 18 C 1.53041 * 109.31147 * 185.57694 * 17 15 14 19 19 C 1.53048 * 109.53536 * 61.36633 * 18 17 15 20 20 C 1.53186 * 109.31157 * 298.63195 * 19 18 17 21 21 N 1.46922 * 109.58918 * 69.41085 * 15 14 13 22 22 C 1.34781 * 120.62642 * 353.39573 * 21 15 14 23 23 O 1.21276 * 120.00232 * 6.04575 * 22 21 15 24 24 C 1.50704 * 119.99807 * 186.04473 * 22 21 15 25 25 H 1.09001 * 110.43406 * 298.91410 * 24 22 21 26 26 C 1.54807 * 110.48807 * 176.22041 * 24 22 21 27 27 C 1.54991 * 102.09074 * 220.44328 * 26 24 22 28 28 O 1.44382 * 103.49128 * 37.02506 * 27 26 24 29 29 C 1.43740 * 106.97650 * 319.93620 * 28 27 26 30 30 H 0.97001 * 120.00505 * 359.97438 * 1 2 3 31 31 H 0.96997 * 120.00373 * 0.02562 * 9 7 2 32 32 H 1.08994 * 109.47684 * 300.00328 * 12 10 9 33 33 H 1.09007 * 109.47413 * 60.00439 * 12 10 9 34 34 H 1.00893 * 111.00122 * 303.95767 * 13 12 10 35 35 H 1.08992 * 109.47643 * 300.00275 * 14 13 12 36 36 H 1.08997 * 109.46941 * 60.00941 * 14 13 12 37 37 H 1.08996 * 109.49643 * 305.53244 * 17 15 14 38 38 H 1.08999 * 109.49629 * 65.62827 * 17 15 14 39 39 H 1.09001 * 109.45907 * 181.38359 * 18 17 15 40 40 H 1.08994 * 109.46135 * 301.34483 * 18 17 15 41 41 H 1.08999 * 109.49704 * 58.58286 * 19 18 17 42 42 H 1.08996 * 109.49694 * 178.68037 * 19 18 17 43 43 H 1.09004 * 109.58828 * 174.42343 * 20 19 18 44 44 H 1.09001 * 109.59070 * 294.70920 * 20 19 18 45 45 H 1.09005 * 110.90442 * 338.64162 * 26 24 22 46 46 H 1.09000 * 110.90859 * 102.24444 * 26 24 22 47 47 H 1.08998 * 110.62168 * 278.52020 * 27 26 24 48 48 H 1.09005 * 110.62057 * 155.51982 * 27 26 24 49 49 H 1.09004 * 109.88033 * 267.09636 * 29 28 27 50 50 H 1.08993 * 109.87892 * 145.93687 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2831 2.7464 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9973 -3.5579 -0.0067 11 8 3.2101 -3.5578 -0.0072 12 6 1.2438 -4.8629 -0.0131 13 7 2.1984 -5.9795 -0.0185 14 6 1.4980 -7.2708 -0.0241 15 6 2.5230 -8.4067 -0.0290 16 1 3.2489 -8.2405 -0.8249 17 6 1.8081 -9.7424 -0.2567 18 6 2.8167 -10.8856 -0.1222 19 6 3.4035 -10.8867 1.2913 20 6 4.1364 -9.5640 1.5365 21 7 3.2143 -8.4520 1.2666 22 6 3.0038 -7.4940 2.1910 23 8 2.1581 -6.6453 2.0031 24 6 3.8193 -7.4775 3.4582 25 1 3.6593 -8.3943 4.0257 26 6 3.4647 -6.2377 4.3148 27 6 4.8557 -5.7930 4.8338 28 8 5.7308 -6.0498 3.7145 29 6 5.3152 -7.2977 3.1346 30 1 -0.4851 0.8400 0.0004 31 1 0.3534 -2.3907 -0.0005 32 1 0.6174 -4.9252 0.8768 33 1 0.6168 -4.9162 -0.9032 34 1 2.8333 -5.9086 -0.7994 35 1 0.8734 -7.3493 0.8656 36 1 0.8729 -7.3412 -0.9143 37 1 1.0192 -9.8640 0.4854 38 1 1.3734 -9.7566 -1.2562 39 1 2.3156 -11.8356 -0.3080 40 1 3.6183 -10.7500 -0.8481 41 1 2.5995 -10.9974 2.0189 42 1 4.1042 -11.7153 1.3937 43 1 4.4708 -9.5182 2.5730 44 1 4.9972 -9.4944 0.8714 45 1 3.0107 -5.4587 3.7021 46 1 2.8099 -6.5109 5.1422 47 1 5.1518 -6.3888 5.6971 48 1 4.8515 -4.7315 5.0819 49 1 5.8892 -8.1170 3.5676 50 1 5.4602 -7.2710 2.0547 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480339118.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:54 Heat of formation + Delta-G solvation = -105.936919 kcal Electronic energy + Delta-G solvation = -31617.878684 eV Core-core repulsion = 27452.208223 eV Total energy + Delta-G solvation = -4165.670461 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.77293 -40.16739 -39.81026 -38.02170 -36.65174 -35.81616 -33.99979 -33.31908 -33.04162 -32.33092 -30.10200 -28.93770 -27.05077 -25.89687 -24.43769 -24.24668 -23.60676 -22.31466 -21.31732 -21.08645 -20.04117 -19.74427 -18.01176 -17.69506 -17.49842 -17.13522 -16.97817 -16.56184 -16.31988 -16.05562 -15.85233 -15.68446 -15.34592 -15.21931 -14.84393 -14.73102 -14.47001 -14.22075 -13.94563 -13.81999 -13.71155 -13.53325 -13.18073 -13.08025 -12.89169 -12.79838 -12.68713 -12.45358 -12.34584 -12.28426 -12.13509 -12.04507 -11.86630 -11.71246 -11.51480 -11.50796 -11.39940 -10.71185 -10.32384 -10.02493 -9.79563 -9.42184 -8.86557 -8.47264 -5.96500 1.37807 1.38362 1.50417 1.93020 2.06005 2.16253 2.28347 2.97943 3.01974 3.19341 3.43805 3.58950 3.61041 3.86855 3.95972 4.00783 4.10022 4.17530 4.19623 4.27773 4.31896 4.32759 4.36727 4.39394 4.45879 4.57787 4.63726 4.70954 4.71326 4.75003 4.76354 4.82705 4.90708 4.92568 5.02319 5.09096 5.14054 5.22295 5.25050 5.27256 5.38229 5.51505 5.80769 5.91763 5.92548 6.19941 6.58628 6.60229 6.68201 7.11534 7.55237 7.59644 8.11827 8.70483 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012987 B = 0.003284 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.504619 B = 8523.437754 C =10070.615743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.014 4.014 3 Si 0.995 3.005 4 H -0.270 1.270 5 H -0.267 1.267 6 H -0.273 1.273 7 C -0.335 4.335 8 H 0.076 0.924 9 N -0.576 5.576 10 C 0.443 3.557 11 O -0.621 6.621 12 C 0.083 3.917 13 N -0.643 5.643 14 C 0.075 3.925 15 C 0.153 3.847 16 H 0.064 0.936 17 C -0.121 4.121 18 C -0.116 4.116 19 C -0.129 4.129 20 C 0.100 3.900 21 N -0.609 5.609 22 C 0.502 3.498 23 O -0.508 6.508 24 C -0.135 4.135 25 H 0.140 0.860 26 C -0.140 4.140 27 C 0.047 3.953 28 O -0.410 6.410 29 C 0.061 3.939 30 H 0.278 0.722 31 H 0.394 0.606 32 H 0.085 0.915 33 H 0.052 0.948 34 H 0.320 0.680 35 H 0.079 0.921 36 H 0.026 0.974 37 H 0.063 0.937 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.096 0.904 43 H 0.098 0.902 44 H 0.071 0.929 45 H 0.050 0.950 46 H 0.103 0.897 47 H 0.095 0.905 48 H 0.082 0.918 49 H 0.101 0.899 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.539 -27.337 5.903 28.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.214 4.214 3 Si 0.818 3.182 4 H -0.195 1.195 5 H -0.191 1.191 6 H -0.198 1.198 7 C -0.464 4.464 8 H 0.094 0.906 9 N -0.213 5.213 10 C 0.230 3.770 11 O -0.507 6.507 12 C -0.050 4.050 13 N -0.276 5.276 14 C -0.053 4.053 15 C 0.050 3.950 16 H 0.082 0.918 17 C -0.160 4.160 18 C -0.154 4.154 19 C -0.167 4.167 20 C -0.022 4.022 21 N -0.345 5.345 22 C 0.289 3.711 23 O -0.381 6.381 24 C -0.157 4.157 25 H 0.157 0.843 26 C -0.178 4.178 27 C -0.029 4.029 28 O -0.330 6.330 29 C -0.015 4.015 30 H 0.087 0.913 31 H 0.228 0.772 32 H 0.103 0.897 33 H 0.069 0.931 34 H 0.138 0.862 35 H 0.098 0.902 36 H 0.044 0.956 37 H 0.081 0.919 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.089 0.911 45 H 0.069 0.931 46 H 0.121 0.879 47 H 0.113 0.887 48 H 0.100 0.900 49 H 0.119 0.881 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.990 -26.570 6.421 27.787 hybrid contribution -0.779 1.192 -1.044 1.766 sum 4.211 -25.378 5.376 26.281 Atomic orbital electron populations 1.69677 1.06884 1.29357 1.50447 1.26077 0.96592 1.02441 0.96247 0.84972 0.77771 0.76484 0.78973 1.19540 1.19106 1.19823 1.19623 0.92581 0.84127 1.50091 0.90628 1.41923 1.09140 1.04744 1.65520 1.20881 0.88244 0.86113 0.81730 1.90467 1.15851 1.87972 1.56385 1.21263 0.93942 0.88609 1.01168 1.60321 1.18576 1.00370 1.48286 1.22136 0.95853 0.87459 0.99857 1.21194 0.93585 0.94995 0.85254 0.91773 1.21879 0.98498 0.92973 1.02639 1.21501 0.98480 0.98045 0.97338 1.21902 1.00775 0.96769 0.97219 1.22001 0.91882 0.85397 1.02901 1.47907 1.45876 1.25576 1.15155 1.20544 0.84590 0.80786 0.85191 1.90811 1.33973 1.37427 1.75926 1.22749 0.95673 1.01901 0.95333 0.84267 1.23031 0.98317 0.96858 0.99616 1.23712 0.87555 1.02075 0.89578 1.88888 1.56288 1.40990 1.46790 1.23288 0.92122 0.87203 0.98927 0.91262 0.77250 0.89669 0.93056 0.86209 0.90229 0.95608 0.91859 0.90087 0.90263 0.91478 0.91720 0.88514 0.88414 0.91079 0.93094 0.87903 0.88678 0.89960 0.88094 0.91404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.80 13.05 21.66 0.28 -52.52 16 2 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 3 Si 0.99 45.47 29.55 68.60 2.03 47.49 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 6 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.33 -20.53 9.68 84.04 0.81 -19.72 16 8 H 0.08 4.93 7.16 -2.91 -0.02 4.91 16 9 N -0.58 -32.75 5.29 -306.98 -1.62 -34.37 16 10 C 0.44 23.95 7.82 87.65 0.69 24.64 16 11 O -0.62 -38.32 15.78 -3.05 -0.05 -38.36 16 12 C 0.08 3.48 5.78 85.55 0.49 3.98 16 13 N -0.64 -24.36 3.55 -517.93 -1.84 -26.20 16 14 C 0.08 2.15 4.30 86.30 0.37 2.52 16 15 C 0.15 3.33 3.07 44.98 0.14 3.47 16 16 H 0.06 1.45 8.12 -2.39 -0.02 1.43 16 17 C -0.12 -1.79 5.36 30.68 0.16 -1.62 16 18 C -0.12 -1.17 5.88 30.62 0.18 -0.99 16 19 C -0.13 -1.12 6.08 30.67 0.19 -0.93 16 20 C 0.10 1.25 5.35 86.35 0.46 1.71 16 21 N -0.61 -12.86 2.91 -794.93 -2.31 -15.17 16 22 C 0.50 13.93 6.57 87.66 0.58 14.51 16 23 O -0.51 -18.70 8.96 -3.02 -0.03 -18.72 16 24 C -0.14 -2.94 2.49 -10.55 -0.03 -2.97 16 25 H 0.14 1.85 7.52 -2.39 -0.02 1.83 16 26 C -0.14 -3.68 6.50 31.89 0.21 -3.47 16 27 C 0.05 1.15 7.72 72.66 0.56 1.71 16 28 O -0.41 -12.65 11.52 -148.98 -1.72 -14.37 16 29 C 0.06 1.38 5.89 72.36 0.43 1.81 16 30 H 0.28 14.82 8.31 -92.71 -0.77 14.05 16 31 H 0.39 21.45 7.90 -92.71 -0.73 20.72 16 32 H 0.09 3.60 7.88 -2.39 -0.02 3.58 16 33 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 34 H 0.32 12.66 8.41 -89.70 -0.75 11.90 16 35 H 0.08 2.53 6.30 -2.39 -0.02 2.51 16 36 H 0.03 0.67 8.13 -2.39 -0.02 0.65 16 37 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 43 H 0.10 0.89 5.24 -2.39 -0.01 0.87 16 44 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.05 1.90 6.93 -2.38 -0.02 1.89 16 46 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 47 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 48 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 49 H 0.10 1.42 7.97 -2.38 -0.02 1.40 16 50 H 0.07 1.77 7.20 -2.39 -0.02 1.75 16 Total: -1.00 -81.19 386.53 -0.07 -81.26 By element: Atomic # 1 Polarization: 47.18 SS G_CDS: -0.53 Total: 46.66 kcal Atomic # 6 Polarization: 18.59 SS G_CDS: 5.71 Total: 24.30 kcal Atomic # 7 Polarization: -122.77 SS G_CDS: -5.49 Total: -128.26 kcal Atomic # 8 Polarization: -69.66 SS G_CDS: -1.79 Total: -71.45 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Total: -81.19 -0.07 -81.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480339118.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.672 kcal (2) G-P(sol) polarization free energy of solvation -81.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds