Wall clock time and date at job start Sat Apr 11 2020 05:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86803 * 119.99665 * 2 1 4 4 H 1.48503 * 109.46958 * 240.00102 * 3 2 1 5 5 H 1.48500 * 109.47342 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47622 * 119.99983 * 3 2 1 7 7 C 1.38950 * 120.00367 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99639 * 180.02562 * 7 2 1 9 9 N 1.37092 * 119.99886 * 359.97438 * 7 2 1 10 10 C 1.34780 * 120.00269 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99251 * 0.02562 * 10 9 7 12 12 C 1.50695 * 120.00330 * 180.02562 * 10 9 7 13 13 N 1.46897 * 109.47044 * 174.36103 * 12 10 9 14 14 C 1.46898 * 110.99773 * 288.32833 * 13 12 10 15 15 C 1.53005 * 109.47155 * 170.00249 * 14 13 12 16 16 N 1.46498 * 109.47056 * 179.97438 * 15 14 13 17 17 C 1.34774 * 119.99774 * 179.97438 * 16 15 14 18 18 O 1.21288 * 120.00385 * 0.02562 * 17 16 15 19 19 C 1.50699 * 120.00169 * 180.02562 * 17 16 15 20 20 C 1.52994 * 109.47514 * 179.97438 * 19 17 16 21 21 H 1.08995 * 109.82865 * 305.70866 * 20 19 17 22 22 C 1.54376 * 109.83464 * 184.81534 * 20 19 17 23 23 C 1.55452 * 102.19040 * 219.18448 * 22 20 19 24 24 C 1.54950 * 100.98820 * 34.04048 * 23 22 20 25 25 O 1.43240 * 109.82694 * 66.59102 * 20 19 17 26 26 C 1.46906 * 110.99930 * 164.37376 * 13 12 10 27 27 C 1.52997 * 117.49637 * 6.94505 * 26 13 12 28 28 C 1.52995 * 117.49797 * 298.32404 * 26 13 12 29 29 H 0.96997 * 120.00386 * 359.97438 * 1 2 3 30 30 H 0.97000 * 120.00019 * 0.02562 * 9 7 2 31 31 H 1.09007 * 109.47006 * 294.35833 * 12 10 9 32 32 H 1.09000 * 109.47123 * 54.35338 * 12 10 9 33 33 H 1.09005 * 109.47219 * 289.99852 * 14 13 12 34 34 H 1.08992 * 109.47562 * 49.99907 * 14 13 12 35 35 H 1.08992 * 109.47049 * 299.99818 * 15 14 13 36 36 H 1.09004 * 109.46830 * 59.99516 * 15 14 13 37 37 H 0.96996 * 120.00125 * 359.97438 * 16 15 14 38 38 H 1.08993 * 109.47480 * 300.00843 * 19 17 16 39 39 H 1.09007 * 109.46685 * 60.00250 * 19 17 16 40 40 H 1.09001 * 110.85027 * 337.32184 * 22 20 19 41 41 H 1.09001 * 110.84952 * 100.93787 * 22 20 19 42 42 H 1.08997 * 111.06021 * 276.12406 * 23 22 20 43 43 H 1.09001 * 111.18644 * 152.00893 * 23 22 20 44 44 H 1.08998 * 110.30854 * 204.69242 * 24 23 22 45 45 H 1.08997 * 110.30863 * 82.52042 * 24 23 22 46 46 H 1.08998 * 115.54703 * 152.65096 * 26 13 12 47 47 H 1.08993 * 117.50058 * 0.02562 * 27 26 13 48 48 H 1.09003 * 117.49555 * 145.02190 * 27 26 13 49 49 H 1.09005 * 117.49874 * 214.97669 * 28 26 13 50 50 H 1.08997 * 117.50284 * 359.97438 * 28 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2830 2.7465 -0.0006 6 1 3.1018 1.6967 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3235 -2.3906 0.0016 10 6 1.9974 -3.5578 0.0026 11 8 3.2103 -3.5577 0.0031 12 6 1.2440 -4.8629 0.0032 13 7 2.1929 -5.9761 -0.1317 14 6 2.7498 -6.0313 -1.4899 15 6 3.9065 -7.0323 -1.5266 16 7 4.4615 -7.0878 -2.8813 17 6 5.4966 -7.9072 -3.1523 18 8 5.9684 -8.5990 -2.2749 19 6 6.0679 -7.9639 -4.5457 20 6 7.2252 -8.9640 -4.5821 21 1 7.9572 -8.7104 -3.8153 22 6 7.8943 -8.9404 -5.9731 23 6 8.1981 -10.4453 -6.2168 24 6 6.9881 -11.1088 -5.5120 25 8 6.7291 -10.2894 -4.3608 26 6 1.5623 -7.2524 0.2310 27 6 0.0579 -7.2428 0.5099 28 6 1.0490 -7.4045 1.6642 29 1 -0.4850 0.8400 0.0004 30 1 0.3535 -2.3906 0.0016 31 1 0.6949 -4.9650 0.9393 32 1 0.5440 -4.8787 -0.8321 33 1 1.9743 -6.3465 -2.1881 34 1 3.1145 -5.0442 -1.7735 35 1 4.6819 -6.7172 -0.8285 36 1 3.5417 -8.0195 -1.2430 37 1 4.0839 -6.5348 -3.5831 38 1 5.2926 -8.2793 -5.2438 39 1 6.4324 -6.9765 -4.8293 40 1 7.2076 -8.5564 -6.7275 41 1 8.8142 -8.3561 -5.9512 42 1 9.1361 -10.7370 -5.7446 43 1 8.2082 -10.6777 -7.2817 44 1 7.2391 -12.1240 -5.2050 45 1 6.1221 -11.1159 -6.1738 46 1 1.9796 -8.1366 -0.2507 47 1 -0.4638 -6.2898 0.4238 48 1 -0.5147 -8.1210 0.2115 49 1 1.1282 -8.3890 2.1254 50 1 1.1795 -6.5578 2.3382 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481159722.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:04 Heat of formation + Delta-G solvation = -82.973866 kcal Electronic energy + Delta-G solvation = -29311.697089 eV Core-core repulsion = 25147.022381 eV Total energy + Delta-G solvation = -4164.674708 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.21571 -39.40014 -38.80990 -37.48300 -35.23441 -34.00533 -33.15660 -32.62321 -31.92543 -31.25270 -29.40819 -27.22095 -25.99552 -24.29002 -22.90194 -22.27406 -22.18151 -21.52194 -20.34803 -20.20486 -18.84669 -17.83799 -17.41439 -17.02474 -16.63698 -16.35276 -15.98589 -15.59407 -15.32598 -15.00910 -14.59960 -14.36929 -14.24618 -14.03098 -13.82346 -13.75708 -13.36482 -13.15642 -13.04625 -12.59750 -12.46687 -12.15335 -12.05702 -11.88916 -11.56535 -11.52760 -11.46034 -11.34198 -11.27558 -11.20066 -11.08995 -10.95188 -10.58934 -10.45561 -10.24530 -10.22276 -9.80032 -9.71767 -9.49097 -8.94932 -8.40666 -7.97787 -7.82361 -6.42794 -3.83638 2.72723 3.06932 3.18807 3.24747 3.29102 3.58201 3.81477 3.89545 4.05412 4.11556 4.23596 4.38001 4.53087 4.69830 4.81932 4.85765 4.90308 4.96469 4.98871 5.07383 5.09943 5.19213 5.20598 5.26425 5.30732 5.34866 5.39023 5.42178 5.50083 5.60413 5.62547 5.67792 5.72803 5.78016 5.87198 5.97731 6.03423 6.17531 6.21158 6.24157 6.27430 6.49090 6.85077 7.16689 7.30936 7.53769 7.54045 8.04685 8.30410 8.60655 9.17017 9.53097 10.05126 10.74823 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011740 B = 0.002201 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.377567 B =12720.065718 C =14691.485949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.298 4.298 8 H 0.102 0.898 9 N -0.565 5.565 10 C 0.441 3.559 11 O -0.574 6.574 12 C 0.043 3.957 13 N -0.478 5.478 14 C 0.051 3.949 15 C 0.127 3.873 16 N -0.731 5.731 17 C 0.514 3.486 18 O -0.528 6.528 19 C -0.154 4.154 20 C 0.097 3.903 21 H 0.089 0.911 22 C -0.153 4.153 23 C -0.157 4.157 24 C 0.045 3.955 25 O -0.362 6.362 26 C 0.019 3.981 27 C -0.223 4.223 28 C -0.171 4.171 29 H 0.272 0.728 30 H 0.391 0.609 31 H 0.093 0.907 32 H 0.052 0.948 33 H 0.033 0.967 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.062 0.938 37 H 0.398 0.602 38 H 0.096 0.904 39 H 0.104 0.896 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.057 0.943 46 H 0.119 0.881 47 H 0.101 0.899 48 H 0.091 0.909 49 H 0.095 0.905 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.223 -18.602 -12.652 23.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.428 4.428 8 H 0.120 0.880 9 N -0.202 5.202 10 C 0.226 3.774 11 O -0.458 6.458 12 C -0.088 4.088 13 N -0.199 5.199 14 C -0.077 4.077 15 C 0.004 3.996 16 N -0.384 5.384 17 C 0.299 3.701 18 O -0.404 6.404 19 C -0.194 4.194 20 C 0.038 3.962 21 H 0.107 0.893 22 C -0.190 4.190 23 C -0.194 4.194 24 C -0.032 4.032 25 O -0.280 6.280 26 C -0.091 4.091 27 C -0.263 4.263 28 C -0.208 4.208 29 H 0.082 0.918 30 H 0.224 0.776 31 H 0.112 0.888 32 H 0.070 0.930 33 H 0.051 0.949 34 H 0.115 0.885 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.232 0.768 38 H 0.114 0.886 39 H 0.122 0.878 40 H 0.098 0.902 41 H 0.103 0.897 42 H 0.097 0.903 43 H 0.100 0.900 44 H 0.101 0.899 45 H 0.075 0.925 46 H 0.137 0.863 47 H 0.119 0.881 48 H 0.109 0.891 49 H 0.114 0.886 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 7.555 -18.898 -11.488 23.371 hybrid contribution -1.186 1.159 -1.047 1.961 sum 6.369 -17.739 -12.534 22.635 Atomic orbital electron populations 1.69600 1.05913 1.28247 1.50585 1.25255 0.95632 0.99693 0.97366 0.85927 0.78762 0.80508 0.79076 1.19951 1.21000 1.19880 1.19636 0.93311 0.82190 1.47666 0.87984 1.41861 1.09150 1.04555 1.64603 1.19756 0.88470 0.84482 0.84657 1.90531 1.13546 1.86920 1.54783 1.21989 0.93810 0.90933 1.02020 1.61232 1.33201 1.00588 1.24915 1.22230 0.95391 1.01249 0.88865 1.21273 0.96429 0.98804 0.83141 1.45948 1.35174 1.44552 1.12693 1.20438 0.79769 0.79371 0.90484 1.90735 1.59738 1.41868 1.48059 1.22141 1.00003 1.01701 0.95552 1.22470 0.93866 0.83105 0.96714 0.89343 1.23240 1.01713 0.97262 0.96829 1.23290 0.99483 0.94962 1.01685 1.23405 0.96258 0.95538 0.87991 1.88627 1.81229 1.20620 1.37568 1.22778 0.92971 0.93623 0.99684 1.23613 0.93867 1.03588 1.05183 1.23054 1.02900 1.03147 0.91748 0.91835 0.77551 0.88846 0.93027 0.94869 0.88469 0.90202 0.91938 0.76802 0.88574 0.87812 0.90238 0.89697 0.90295 0.89983 0.89853 0.92478 0.86328 0.88083 0.89057 0.88618 0.88301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.26 13.05 55.50 0.72 -23.53 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 20.88 29.55 -169.99 -5.02 15.86 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 7 C -0.30 -8.20 9.68 -14.94 -0.14 -8.35 16 8 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 9 N -0.56 -14.05 5.29 -10.97 -0.06 -14.11 16 10 C 0.44 10.21 7.30 -10.99 -0.08 10.13 16 11 O -0.57 -15.26 14.75 5.55 0.08 -15.18 16 12 C 0.04 0.76 4.10 -4.98 -0.02 0.74 16 13 N -0.48 -7.86 4.31 -228.09 -0.98 -8.85 16 14 C 0.05 0.77 4.71 -3.82 -0.02 0.75 16 15 C 0.13 1.85 5.66 -4.04 -0.02 1.82 16 16 N -0.73 -8.93 5.56 -60.29 -0.33 -9.26 16 17 C 0.51 6.81 7.73 -10.99 -0.08 6.73 16 18 O -0.53 -9.33 15.49 -6.72 -0.10 -9.43 16 19 C -0.15 -1.37 5.27 -27.89 -0.15 -1.52 16 20 C 0.10 0.94 3.04 -26.01 -0.08 0.86 16 21 H 0.09 0.99 7.94 -51.93 -0.41 0.57 16 22 C -0.15 -0.96 6.56 -24.71 -0.16 -1.12 16 23 C -0.16 -0.93 7.16 -24.40 -0.17 -1.11 16 24 C 0.04 0.36 7.78 38.19 0.30 0.65 16 25 O -0.36 -4.36 10.37 -47.50 -0.49 -4.85 16 26 C 0.02 0.26 5.81 -67.71 -0.39 -0.14 16 27 C -0.22 -2.64 9.53 -26.73 -0.25 -2.89 16 28 C -0.17 -2.13 9.96 -26.74 -0.27 -2.40 16 29 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 31 H 0.09 1.53 5.83 -51.92 -0.30 1.23 16 32 H 0.05 0.82 7.87 -51.93 -0.41 0.41 16 33 H 0.03 0.44 8.12 -51.93 -0.42 0.01 16 34 H 0.10 1.73 6.51 -51.93 -0.34 1.39 16 35 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 36 H 0.06 0.90 6.42 -51.93 -0.33 0.57 16 37 H 0.40 3.78 8.47 -40.82 -0.35 3.43 16 38 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.08 0.40 7.85 -51.93 -0.41 -0.01 16 41 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.12 1.47 6.35 -51.93 -0.33 1.14 16 47 H 0.10 1.24 5.93 -51.93 -0.31 0.93 16 48 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 49 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 50 H 0.10 1.36 7.67 -51.93 -0.40 0.96 16 LS Contribution 403.21 15.07 6.08 6.08 Total: -1.00 -34.48 403.21 -9.83 -44.31 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: -8.07 Total: 14.31 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: -1.65 Total: 4.66 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: -0.65 Total: -55.75 kcal Atomic # 8 Polarization: -28.94 SS G_CDS: -0.51 Total: -29.46 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.48 -9.83 -44.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481159722.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.666 kcal (2) G-P(sol) polarization free energy of solvation -34.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds