Wall clock time and date at job start Sat Apr 11 2020 05:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.64452 * 2 1 4 4 O 1.21280 * 119.99781 * 119.99678 * 3 2 1 5 5 N 1.34771 * 119.99622 * 300.00354 * 3 2 1 6 6 C 1.46505 * 119.99622 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47212 * 179.97438 * 6 5 3 8 8 H 1.08998 * 109.47533 * 59.99637 * 7 6 5 9 9 O 1.42905 * 109.47264 * 299.99925 * 7 6 5 10 10 C 1.52992 * 109.47482 * 179.97438 * 7 6 5 11 11 N 1.46903 * 109.47578 * 185.00096 * 10 7 6 12 12 C 1.46903 * 111.00177 * 180.02562 * 11 10 7 13 13 C 1.50698 * 109.47148 * 180.02562 * 12 11 10 14 14 O 1.21291 * 119.99715 * 359.97438 * 13 12 11 15 15 N 1.34769 * 120.00371 * 179.97438 * 13 12 11 16 16 C 1.37097 * 120.00527 * 179.97438 * 15 13 12 17 17 H 1.07993 * 119.99535 * 0.02562 * 16 15 13 18 18 C 1.38950 * 120.00225 * 180.02562 * 16 15 13 19 19 N 1.31418 * 120.00023 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00096 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47100 * 89.99699 * 20 18 16 22 22 H 1.48494 * 109.47103 * 209.99740 * 20 18 16 23 23 H 1.48496 * 109.46987 * 330.00097 * 20 18 16 24 24 C 1.53026 * 109.63995 * 239.57920 * 2 1 3 25 25 C 1.50172 * 110.09382 * 289.32539 * 24 2 1 26 26 C 1.29437 * 124.14768 * 343.28392 * 25 24 2 27 27 C 1.50067 * 124.07721 * 0.24125 * 26 25 24 28 28 C 1.53020 * 110.14850 * 342.86704 * 27 26 25 29 29 H 1.09001 * 109.46921 * 59.99788 * 1 2 3 30 30 H 1.08997 * 109.47381 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46796 * 300.00119 * 1 2 3 32 32 H 0.96996 * 120.00772 * 359.97438 * 5 3 2 33 33 H 1.09002 * 109.47068 * 299.99729 * 6 5 3 34 34 H 1.09001 * 109.47372 * 59.99816 * 6 5 3 35 35 H 0.96696 * 114.00036 * 299.99911 * 9 7 6 36 36 H 1.09001 * 109.47563 * 305.00337 * 10 7 6 37 37 H 1.09004 * 109.47313 * 64.99993 * 10 7 6 38 38 H 1.00895 * 110.99987 * 56.04684 * 11 10 7 39 39 H 1.09001 * 109.46813 * 299.99603 * 12 11 10 40 40 H 1.08993 * 109.47342 * 59.99787 * 12 11 10 41 41 H 0.97004 * 119.99872 * 359.97438 * 15 13 12 42 42 H 0.96992 * 119.99832 * 180.02562 * 19 18 16 43 43 H 1.08996 * 109.35841 * 49.75129 * 24 2 1 44 44 H 1.08995 * 109.35624 * 169.33893 * 24 2 1 45 45 H 1.07995 * 117.88485 * 163.03454 * 25 24 2 46 46 H 1.08001 * 117.96462 * 180.26096 * 26 25 24 47 47 H 1.09004 * 109.35808 * 222.66273 * 27 26 25 48 48 H 1.08997 * 109.24795 * 103.00588 * 27 26 25 49 49 H 1.09005 * 109.64688 * 289.75404 * 28 27 26 50 50 H 1.09001 * 109.82061 * 169.22560 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0366 1.4193 0.0000 4 8 2.7350 1.8138 0.9097 5 7 1.7134 2.2501 -1.0108 6 6 2.2055 3.6300 -1.0105 7 6 1.6983 4.3526 -2.2601 8 1 0.6083 4.3555 -2.2609 9 8 2.1735 3.6777 -3.4266 10 6 2.2116 5.7939 -2.2595 11 7 1.6285 6.5219 -3.3944 12 6 2.1005 7.9126 -3.4263 13 6 1.4821 8.6262 -4.6007 14 8 0.7232 8.0343 -5.3389 15 7 1.7722 9.9220 -4.8309 16 6 1.2101 10.5711 -5.8997 17 1 0.5344 10.0441 -6.5569 18 6 1.5097 11.9069 -6.1373 19 7 2.3316 12.5484 -5.3372 20 14 0.7431 12.7915 -7.5931 21 1 -0.5404 13.4109 -7.1760 22 1 1.6693 13.8478 -8.0740 23 1 0.4910 11.8188 -8.6864 24 6 2.0443 -0.7298 -1.2428 25 6 1.7782 -2.2029 -1.1232 26 6 1.4895 -2.8012 -0.0124 27 6 1.3751 -2.1055 1.3124 28 6 2.0455 -0.7316 1.2458 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.1551 1.9345 -1.7384 33 1 1.8433 4.1447 -0.1205 34 1 3.2955 3.6271 -1.0102 35 1 3.1374 3.6369 -3.4921 36 1 1.9236 6.2818 -1.3283 37 1 3.2980 5.7927 -2.3482 38 1 0.6206 6.4823 -3.3700 39 1 1.8120 8.4154 -2.5032 40 1 3.1860 7.9258 -3.5232 41 1 2.3789 10.3955 -4.2404 42 1 2.5404 13.4810 -5.5029 43 1 1.5400 -0.3383 -2.1262 44 1 3.1175 -0.5660 -1.3396 45 1 1.8271 -2.7996 -2.0221 46 1 1.3208 -3.8676 -0.0405 47 1 1.8611 -2.7078 2.0800 48 1 0.3217 -1.9817 1.5634 49 1 3.1265 -0.8542 1.1776 50 1 1.7978 -0.1559 2.1376 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482732663.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:13 Heat of formation + Delta-G solvation = -121.375826 kcal Electronic energy + Delta-G solvation = -28794.238761 eV Core-core repulsion = 24627.898819 eV Total energy + Delta-G solvation = -4166.339942 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.97356 -38.84543 -38.27218 -37.67900 -35.01553 -34.51815 -33.79401 -32.80379 -31.31489 -31.22726 -30.14741 -27.59327 -27.24830 -25.07959 -24.01350 -23.44130 -22.41146 -21.98108 -20.20963 -19.25791 -18.03678 -17.90466 -17.50300 -17.04936 -16.49966 -16.21445 -15.81372 -15.43517 -15.37088 -14.87269 -14.85713 -14.64705 -14.47167 -14.35088 -13.78294 -13.72048 -13.58041 -13.41309 -13.30290 -13.05009 -12.66647 -12.52282 -12.44184 -12.34988 -12.07760 -11.87124 -11.56789 -11.51261 -11.35032 -11.17827 -11.09514 -11.03724 -10.72007 -10.39615 -10.30586 -10.21573 -9.86156 -9.51362 -9.43221 -9.38016 -8.47042 -8.08136 -7.96448 -6.42171 -3.83050 1.86520 2.34911 2.79350 3.17681 3.26415 3.32598 3.89500 3.95282 4.08527 4.14089 4.21362 4.28891 4.37428 4.62051 4.67485 4.69446 4.80157 4.83236 4.89278 4.94254 5.04862 5.10204 5.15161 5.20639 5.23364 5.30065 5.35753 5.38628 5.43574 5.50142 5.50348 5.56023 5.67508 5.76043 5.81180 5.84601 5.89472 5.94226 6.09269 6.22371 6.24506 6.51223 7.12473 7.19234 7.48082 7.54936 7.63524 7.92912 8.05816 8.60747 9.17494 9.53670 10.05183 10.75570 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.037618 B = 0.001496 C = 0.001467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.142298 B =18710.747475 C =19081.336968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.077 4.077 3 C 0.523 3.477 4 O -0.541 6.541 5 N -0.720 5.720 6 C 0.086 3.914 7 C 0.101 3.899 8 H 0.104 0.896 9 O -0.543 6.543 10 C 0.030 3.970 11 N -0.659 5.659 12 C 0.050 3.950 13 C 0.440 3.560 14 O -0.582 6.582 15 N -0.564 5.564 16 C -0.300 4.300 17 H 0.103 0.897 18 C 0.022 3.978 19 N -0.902 5.902 20 Si 0.931 3.069 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.269 1.269 24 C -0.079 4.079 25 C -0.151 4.151 26 C -0.156 4.156 27 C -0.093 4.093 28 C -0.095 4.095 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.406 0.594 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.375 0.625 36 H 0.038 0.962 37 H 0.077 0.923 38 H 0.350 0.650 39 H 0.043 0.957 40 H 0.086 0.914 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.107 0.893 46 H 0.103 0.897 47 H 0.074 0.926 48 H 0.077 0.923 49 H 0.069 0.931 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.000 -27.360 14.284 30.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.081 4.081 3 C 0.309 3.691 4 O -0.418 6.418 5 N -0.373 5.373 6 C -0.038 4.038 7 C 0.041 3.959 8 H 0.122 0.878 9 O -0.348 6.348 10 C -0.101 4.101 11 N -0.291 5.291 12 C -0.082 4.082 13 C 0.226 3.774 14 O -0.466 6.466 15 N -0.200 5.200 16 C -0.429 4.429 17 H 0.121 0.879 18 C -0.179 4.179 19 N -0.543 5.543 20 Si 0.758 3.242 21 H -0.204 1.204 22 H -0.209 1.209 23 H -0.194 1.194 24 C -0.116 4.116 25 C -0.169 4.169 26 C -0.174 4.174 27 C -0.130 4.130 28 C -0.132 4.132 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.241 0.759 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.222 0.778 36 H 0.056 0.944 37 H 0.096 0.904 38 H 0.169 0.831 39 H 0.061 0.939 40 H 0.104 0.896 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.098 0.902 44 H 0.096 0.904 45 H 0.125 0.875 46 H 0.122 0.878 47 H 0.092 0.908 48 H 0.095 0.905 49 H 0.088 0.912 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.107 -27.529 13.853 30.818 hybrid contribution -0.026 1.234 0.187 1.248 sum -0.134 -26.295 14.040 29.808 Atomic orbital electron populations 1.21926 0.92225 1.03410 1.02459 1.20849 0.97491 0.91560 0.98156 1.20551 0.79870 0.87229 0.81496 1.90702 1.37816 1.77320 1.35923 1.45885 1.53854 1.12034 1.25482 1.22075 1.00048 0.82387 0.99319 1.22094 0.99857 0.90169 0.83761 0.87816 1.86627 1.26861 1.78244 1.43033 1.22574 1.00724 0.93813 0.92967 1.59960 1.14268 1.12677 1.42213 1.21688 1.00786 0.88543 0.97204 1.19783 0.86480 0.83008 0.88154 1.90532 1.39688 1.66328 1.50024 1.41860 1.42302 1.08836 1.27052 1.19713 1.24921 0.93390 1.04923 0.87901 1.25264 0.96989 0.96713 0.98964 1.69613 1.35098 1.11511 1.38113 0.85847 0.78530 0.78890 0.80968 1.20435 1.20919 1.19390 1.20512 1.01708 0.92984 0.96404 1.21971 1.01099 0.95687 0.98158 1.22070 1.01117 0.99629 0.94557 1.20539 1.01327 0.95532 0.95617 1.21444 1.00612 0.94771 0.96422 0.92041 0.90715 0.92032 0.75879 0.90553 0.90962 0.77786 0.94422 0.90422 0.83060 0.93918 0.89613 0.77474 0.91877 0.90165 0.90365 0.87538 0.87847 0.90756 0.90480 0.91180 0.90674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 7.72 37.16 0.29 -0.56 16 2 C -0.08 -0.56 0.63 -155.44 -0.10 -0.65 16 3 C 0.52 5.06 6.47 -10.99 -0.07 4.99 16 4 O -0.54 -7.30 15.90 5.56 0.09 -7.22 16 5 N -0.72 -5.80 5.25 -60.29 -0.32 -6.12 16 6 C 0.09 0.73 5.34 -4.04 -0.02 0.71 16 7 C 0.10 0.93 3.23 -26.74 -0.09 0.84 16 8 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 9 O -0.54 -5.65 13.03 -35.23 -0.46 -6.10 16 10 C 0.03 0.32 5.32 -3.83 -0.02 0.30 16 11 N -0.66 -10.22 6.07 -115.06 -0.70 -10.92 16 12 C 0.05 0.87 6.17 -4.98 -0.03 0.84 16 13 C 0.44 10.40 7.82 -10.99 -0.09 10.31 16 14 O -0.58 -15.89 15.78 5.55 0.09 -15.80 16 15 N -0.56 -14.30 5.29 -10.97 -0.06 -14.36 16 16 C -0.30 -8.40 9.68 -14.93 -0.14 -8.54 16 17 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 18 C 0.02 0.60 5.50 -17.46 -0.10 0.50 16 19 N -0.90 -24.53 13.05 55.50 0.72 -23.81 16 20 Si 0.93 21.07 29.55 -169.99 -5.02 16.04 16 21 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 24 C -0.08 -0.50 4.73 -28.12 -0.13 -0.63 16 25 C -0.15 -0.89 9.42 -35.85 -0.34 -1.23 16 26 C -0.16 -0.88 9.16 -35.90 -0.33 -1.21 16 27 C -0.09 -0.52 5.49 -28.18 -0.15 -0.68 16 28 C -0.09 -0.71 4.33 -26.52 -0.11 -0.83 16 29 H 0.06 0.32 7.58 -51.93 -0.39 -0.07 16 30 H 0.07 0.40 5.71 -51.93 -0.30 0.10 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.41 2.74 7.48 -40.82 -0.31 2.44 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.37 2.94 9.05 45.56 0.41 3.36 16 36 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.35 5.67 8.43 -39.29 -0.33 5.34 16 39 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 42 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 43 H 0.08 0.43 7.88 -51.93 -0.41 0.02 16 44 H 0.08 0.55 8.10 -51.93 -0.42 0.13 16 45 H 0.11 0.53 8.06 -52.49 -0.42 0.11 16 46 H 0.10 0.48 8.06 -52.49 -0.42 0.06 16 47 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 48 H 0.08 0.38 6.91 -51.93 -0.36 0.02 16 49 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 50 H 0.07 0.63 7.90 -51.93 -0.41 0.22 16 LS Contribution 406.16 15.07 6.12 6.12 Total: -1.00 -34.21 406.16 -8.39 -42.60 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: -7.42 Total: 15.39 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -1.44 Total: 4.17 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: -0.35 Total: -55.21 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -0.28 Total: -29.12 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.21 -8.39 -42.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482732663.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.772 kcal (2) G-P(sol) polarization free energy of solvation -34.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds