Wall clock time and date at job start Sat Apr 11 2020 05:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50694 * 109.64362 * 2 1 4 4 O 1.21290 * 119.99895 * 114.09512 * 3 2 1 5 5 N 1.34773 * 120.00139 * 294.10339 * 3 2 1 6 6 C 1.46504 * 119.99928 * 179.97438 * 5 3 2 7 7 C 1.53007 * 109.46799 * 179.97438 * 6 5 3 8 8 H 1.08993 * 109.47527 * 304.99878 * 7 6 5 9 9 O 1.42900 * 109.47011 * 65.00048 * 7 6 5 10 10 C 1.53002 * 109.46845 * 184.99691 * 7 6 5 11 11 N 1.46908 * 109.46825 * 180.02562 * 10 7 6 12 12 C 1.46896 * 110.99489 * 180.02562 * 11 10 7 13 13 C 1.50703 * 109.46848 * 179.97438 * 12 11 10 14 14 O 1.21295 * 119.99987 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00449 * 179.97438 * 13 12 11 16 16 C 1.37094 * 120.00587 * 179.97438 * 15 13 12 17 17 H 1.08002 * 119.99356 * 0.02562 * 16 15 13 18 18 C 1.38946 * 120.00359 * 179.97438 * 16 15 13 19 19 N 1.31412 * 119.99790 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00185 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47069 * 90.00236 * 20 18 16 22 22 H 1.48497 * 109.47599 * 210.00556 * 20 18 16 23 23 H 1.48499 * 109.47126 * 330.00352 * 20 18 16 24 24 C 1.53026 * 109.81481 * 120.53038 * 2 1 3 25 25 C 1.50071 * 110.14648 * 169.22293 * 24 2 1 26 26 C 1.29448 * 124.07516 * 342.86731 * 25 24 2 27 27 C 1.50066 * 124.07499 * 0.46852 * 26 25 24 28 28 C 1.53021 * 110.15053 * 342.87155 * 27 26 25 29 29 H 1.09005 * 109.47084 * 59.99964 * 1 2 3 30 30 H 1.09001 * 109.47160 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47270 * 300.00044 * 1 2 3 32 32 H 0.97006 * 119.99889 * 359.97438 * 5 3 2 33 33 H 1.08997 * 109.47018 * 60.00076 * 6 5 3 34 34 H 1.08997 * 109.47286 * 299.99003 * 6 5 3 35 35 H 0.96702 * 113.99973 * 59.99421 * 9 7 6 36 36 H 1.09003 * 109.47209 * 300.00377 * 10 7 6 37 37 H 1.08991 * 109.47047 * 60.00418 * 10 7 6 38 38 H 1.00899 * 110.99926 * 56.04478 * 11 10 7 39 39 H 1.09003 * 109.47530 * 299.99438 * 12 11 10 40 40 H 1.08997 * 109.47457 * 59.99994 * 12 11 10 41 41 H 0.96997 * 119.99222 * 0.02562 * 15 13 12 42 42 H 0.96999 * 120.00016 * 179.97438 * 19 18 16 43 43 H 1.08994 * 109.36202 * 289.42733 * 24 2 1 44 44 H 1.09000 * 109.36052 * 49.01666 * 24 2 1 45 45 H 1.07996 * 117.96362 * 162.89158 * 25 24 2 46 46 H 1.08005 * 117.95875 * 180.49237 * 26 25 24 47 47 H 1.08994 * 109.35718 * 222.65801 * 27 26 25 48 48 H 1.09000 * 109.35369 * 103.07834 * 27 26 25 49 49 H 1.09002 * 109.64165 * 289.75380 * 28 27 26 50 50 H 1.08998 * 109.64650 * 169.11538 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0365 1.4192 0.0000 4 8 2.6443 1.8462 0.9589 5 7 1.8142 2.2141 -1.0654 6 6 2.3062 3.5941 -1.0651 7 6 1.9235 4.2722 -2.3822 8 1 2.2945 3.6787 -3.2177 9 8 0.5010 4.3780 -2.4677 10 6 2.5430 5.6702 -2.4348 11 7 2.1750 6.3216 -3.6992 12 6 2.7540 7.6688 -3.7852 13 6 2.3564 8.3039 -5.0928 14 8 1.6588 7.6943 -5.8757 15 7 2.7750 9.5496 -5.3918 16 6 2.4137 10.1272 -6.5815 17 1 1.7932 9.5840 -7.2790 18 6 2.8448 11.4116 -6.8895 19 7 3.5993 12.0727 -6.0406 20 14 2.3519 12.1988 -8.5103 21 1 1.0756 12.9372 -8.3340 22 1 3.4132 13.1417 -8.9457 23 1 2.1749 11.1432 -9.5396 24 6 2.0487 -0.7313 1.2401 25 6 3.5260 -0.9670 1.1210 26 6 4.1845 -0.8957 0.0088 27 6 3.5643 -0.5576 -1.3153 28 6 2.0456 -0.7315 -1.2458 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.3283 1.8726 -1.8324 33 1 3.3910 3.5930 -0.9592 34 1 1.8603 4.1387 -0.2328 35 1 0.1014 4.8942 -1.7542 36 1 2.1719 6.2638 -1.5993 37 1 3.6279 5.5895 -2.3697 38 1 1.1728 6.3503 -3.8128 39 1 2.3851 8.2764 -2.9588 40 1 3.8405 7.6016 -3.7300 41 1 3.3325 10.0372 -4.7655 42 1 3.9006 12.9692 -6.2558 43 1 1.8494 -0.1276 2.1254 44 1 1.5367 -1.6889 1.3354 45 1 4.0738 -1.2116 2.0190 46 1 5.2462 -1.0921 0.0354 47 1 3.9689 -1.2174 -2.0827 48 1 3.7983 0.4760 -1.5704 49 1 1.8010 -1.7914 -1.1758 50 1 1.5867 -0.3045 -2.1375 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482732665.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:19 Heat of formation + Delta-G solvation = -122.177544 kcal Electronic energy + Delta-G solvation = -29178.354403 eV Core-core repulsion = 25011.979696 eV Total energy + Delta-G solvation = -4166.374707 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.07046 -38.78560 -38.09998 -37.40429 -34.97916 -34.55959 -33.78784 -33.31867 -31.27238 -31.19120 -30.21445 -27.30842 -27.03583 -25.12058 -23.71967 -23.50132 -22.61154 -21.92496 -20.16124 -19.27789 -18.67408 -17.90869 -17.14930 -16.68988 -16.55387 -16.33953 -15.79601 -15.49264 -15.43229 -14.99913 -14.67566 -14.47627 -14.29398 -14.17964 -13.92493 -13.74831 -13.47148 -13.25523 -13.04117 -12.91285 -12.76377 -12.63210 -12.45202 -12.37441 -12.23516 -11.91446 -11.82645 -11.59451 -11.52128 -11.17192 -11.02991 -10.82033 -10.56978 -10.41153 -10.39144 -10.21919 -9.86035 -9.51405 -9.39693 -9.18513 -8.47648 -8.09973 -7.96593 -6.42136 -3.82991 2.06437 2.43411 2.83302 3.17701 3.26400 3.32543 3.89486 3.95150 4.09744 4.15859 4.22390 4.25202 4.28659 4.63294 4.74292 4.78628 4.79547 4.89679 4.92281 4.98517 5.05313 5.11534 5.22964 5.23743 5.27430 5.29272 5.30981 5.39915 5.43579 5.50573 5.56406 5.66879 5.67701 5.73387 5.75960 5.82772 5.88821 5.94715 6.13593 6.24686 6.35258 6.68988 7.12996 7.23193 7.38316 7.54940 7.65849 7.99431 8.05858 8.60781 9.17484 9.53664 10.05189 10.75603 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.030389 B = 0.001606 C = 0.001595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.161587 B =17426.708495 C =17547.418846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.081 4.081 3 C 0.527 3.473 4 O -0.536 6.536 5 N -0.723 5.723 6 C 0.089 3.911 7 C 0.099 3.901 8 H 0.115 0.885 9 O -0.553 6.553 10 C 0.031 3.969 11 N -0.663 5.663 12 C 0.050 3.950 13 C 0.440 3.560 14 O -0.582 6.582 15 N -0.564 5.564 16 C -0.299 4.299 17 H 0.103 0.897 18 C 0.022 3.978 19 N -0.902 5.902 20 Si 0.931 3.069 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.269 1.269 24 C -0.069 4.069 25 C -0.139 4.139 26 C -0.164 4.164 27 C -0.096 4.096 28 C -0.108 4.108 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.404 0.596 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.373 0.627 36 H 0.032 0.968 37 H 0.082 0.918 38 H 0.356 0.644 39 H 0.043 0.957 40 H 0.086 0.914 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.103 0.897 46 H 0.101 0.899 47 H 0.076 0.924 48 H 0.073 0.927 49 H 0.077 0.923 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.634 -25.139 15.881 29.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.084 4.084 3 C 0.313 3.687 4 O -0.412 6.412 5 N -0.375 5.375 6 C -0.036 4.036 7 C 0.039 3.961 8 H 0.133 0.867 9 O -0.358 6.358 10 C -0.100 4.100 11 N -0.297 5.297 12 C -0.082 4.082 13 C 0.226 3.774 14 O -0.466 6.466 15 N -0.200 5.200 16 C -0.429 4.429 17 H 0.121 0.879 18 C -0.180 4.180 19 N -0.543 5.543 20 Si 0.758 3.242 21 H -0.204 1.204 22 H -0.209 1.209 23 H -0.194 1.194 24 C -0.106 4.106 25 C -0.157 4.157 26 C -0.182 4.182 27 C -0.133 4.133 28 C -0.146 4.146 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.239 0.761 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.220 0.780 36 H 0.050 0.950 37 H 0.101 0.899 38 H 0.177 0.823 39 H 0.061 0.939 40 H 0.104 0.896 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.100 0.900 44 H 0.098 0.902 45 H 0.121 0.879 46 H 0.119 0.881 47 H 0.094 0.906 48 H 0.091 0.909 49 H 0.096 0.904 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.972 -25.677 15.131 29.869 hybrid contribution -0.398 1.604 0.481 1.721 sum -2.370 -24.074 15.612 28.791 Atomic orbital electron populations 1.21841 0.92060 1.03084 1.02852 1.20914 0.97033 0.92301 0.98143 1.20393 0.78949 0.87171 0.82180 1.90698 1.40584 1.75547 1.34391 1.45885 1.58770 1.12683 1.20205 1.22040 1.00518 0.82533 0.98479 1.22223 0.81373 0.95796 0.96679 0.86711 1.86651 1.19215 1.76401 1.53517 1.22535 1.01538 0.94322 0.91625 1.59969 1.18563 1.19104 1.32078 1.21687 1.00619 0.89169 0.96769 1.19790 0.85784 0.83103 0.88764 1.90533 1.41674 1.63109 1.51262 1.41861 1.46106 1.13006 1.19076 1.19711 1.29800 0.97841 0.95554 0.87896 1.25267 0.96687 0.96561 0.99466 1.69613 1.35353 1.13143 1.36227 0.85844 0.78014 0.78878 0.81477 1.20429 1.20925 1.19395 1.20345 0.93529 0.99756 0.96956 1.21901 0.95902 1.00234 0.97711 1.21938 0.99604 1.02127 0.94503 1.20502 0.94694 1.02093 0.96049 1.21716 0.95732 1.01097 0.96053 0.91672 0.91196 0.91920 0.76061 0.90452 0.91216 0.77973 0.95020 0.89936 0.82312 0.93911 0.89613 0.77471 0.91875 0.89977 0.90206 0.87931 0.88075 0.90587 0.90869 0.90388 0.90951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 8.46 37.15 0.31 -0.46 16 2 C -0.08 -0.57 0.66 -155.45 -0.10 -0.68 16 3 C 0.53 5.13 4.73 -10.99 -0.05 5.08 16 4 O -0.54 -7.26 15.33 5.55 0.09 -7.18 16 5 N -0.72 -5.89 5.25 -60.29 -0.32 -6.21 16 6 C 0.09 0.76 5.31 -4.04 -0.02 0.74 16 7 C 0.10 0.92 3.27 -26.73 -0.09 0.83 16 8 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 9 O -0.55 -5.38 12.62 -35.23 -0.44 -5.82 16 10 C 0.03 0.34 5.39 -3.82 -0.02 0.32 16 11 N -0.66 -10.41 6.12 -115.05 -0.70 -11.12 16 12 C 0.05 0.87 6.17 -4.98 -0.03 0.84 16 13 C 0.44 10.43 7.82 -10.98 -0.09 10.34 16 14 O -0.58 -15.93 15.78 5.54 0.09 -15.84 16 15 N -0.56 -14.33 5.29 -10.96 -0.06 -14.39 16 16 C -0.30 -8.39 9.68 -14.94 -0.14 -8.53 16 17 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 18 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 19 N -0.90 -24.56 13.05 55.50 0.72 -23.84 16 20 Si 0.93 21.09 29.55 -169.99 -5.02 16.06 16 21 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 24 C -0.07 -0.52 4.55 -28.17 -0.13 -0.65 16 25 C -0.14 -1.18 9.08 -35.90 -0.33 -1.50 16 26 C -0.16 -1.36 9.61 -35.90 -0.35 -1.71 16 27 C -0.10 -0.70 5.59 -28.18 -0.16 -0.86 16 28 C -0.11 -0.64 4.71 -26.51 -0.12 -0.77 16 29 H 0.06 0.33 8.01 -51.93 -0.42 -0.09 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.40 2.76 7.62 -40.82 -0.31 2.45 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.37 2.58 9.05 45.56 0.41 2.99 16 36 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.36 5.95 7.82 -39.29 -0.31 5.65 16 39 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 41 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 42 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 43 H 0.08 0.72 7.67 -51.93 -0.40 0.32 16 44 H 0.08 0.45 8.11 -51.93 -0.42 0.03 16 45 H 0.10 0.80 8.06 -52.49 -0.42 0.38 16 46 H 0.10 0.78 8.06 -52.48 -0.42 0.36 16 47 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.07 0.62 7.33 -51.93 -0.38 0.24 16 49 H 0.08 0.40 8.12 -51.93 -0.42 -0.02 16 50 H 0.07 0.35 7.55 -51.93 -0.39 -0.04 16 LS Contribution 407.03 15.07 6.13 6.13 Total: -1.00 -34.30 407.03 -8.47 -42.76 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: -7.54 Total: 15.95 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: -1.41 Total: 3.49 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: -0.35 Total: -55.55 kcal Atomic # 8 Polarization: -28.57 SS G_CDS: -0.27 Total: -28.84 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.30 -8.47 -42.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482732665.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.415 kcal (2) G-P(sol) polarization free energy of solvation -34.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds