Wall clock time and date at job start Sat Apr 11 2020 05:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50694 * 109.64362 * 2 1 4 4 O 1.21290 * 119.99895 * 114.09512 * 3 2 1 5 5 N 1.34773 * 120.00139 * 294.10339 * 3 2 1 6 6 C 1.46504 * 119.99928 * 179.97438 * 5 3 2 7 7 C 1.53007 * 109.46799 * 179.97438 * 6 5 3 8 8 H 1.08993 * 109.47527 * 304.99878 * 7 6 5 9 9 O 1.42900 * 109.47011 * 65.00048 * 7 6 5 10 10 C 1.53002 * 109.46845 * 184.99691 * 7 6 5 11 11 N 1.46908 * 109.46825 * 180.02562 * 10 7 6 12 12 C 1.46896 * 110.99489 * 180.02562 * 11 10 7 13 13 C 1.50703 * 109.46848 * 179.97438 * 12 11 10 14 14 O 1.21295 * 119.99987 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00449 * 179.97438 * 13 12 11 16 16 C 1.37094 * 120.00587 * 179.97438 * 15 13 12 17 17 H 1.08002 * 119.99356 * 0.02562 * 16 15 13 18 18 C 1.38946 * 120.00359 * 179.97438 * 16 15 13 19 19 N 1.31412 * 119.99790 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00185 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47069 * 90.00236 * 20 18 16 22 22 H 1.48497 * 109.47599 * 210.00556 * 20 18 16 23 23 H 1.48499 * 109.47126 * 330.00352 * 20 18 16 24 24 C 1.53026 * 109.81481 * 120.53038 * 2 1 3 25 25 C 1.50071 * 110.14648 * 169.22293 * 24 2 1 26 26 C 1.29448 * 124.07516 * 342.86731 * 25 24 2 27 27 C 1.50066 * 124.07499 * 0.46852 * 26 25 24 28 28 C 1.53021 * 110.15053 * 342.87155 * 27 26 25 29 29 H 1.09005 * 109.47084 * 59.99964 * 1 2 3 30 30 H 1.09001 * 109.47160 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47270 * 300.00044 * 1 2 3 32 32 H 0.97006 * 119.99889 * 359.97438 * 5 3 2 33 33 H 1.08997 * 109.47018 * 60.00076 * 6 5 3 34 34 H 1.08997 * 109.47286 * 299.99003 * 6 5 3 35 35 H 0.96702 * 113.99973 * 59.99421 * 9 7 6 36 36 H 1.09003 * 109.47209 * 300.00377 * 10 7 6 37 37 H 1.08991 * 109.47047 * 60.00418 * 10 7 6 38 38 H 1.00899 * 110.99926 * 56.04478 * 11 10 7 39 39 H 1.09003 * 109.47530 * 299.99438 * 12 11 10 40 40 H 1.08997 * 109.47457 * 59.99994 * 12 11 10 41 41 H 0.96997 * 119.99222 * 0.02562 * 15 13 12 42 42 H 0.96999 * 120.00016 * 179.97438 * 19 18 16 43 43 H 1.08994 * 109.36202 * 289.42733 * 24 2 1 44 44 H 1.09000 * 109.36052 * 49.01666 * 24 2 1 45 45 H 1.07996 * 117.96362 * 162.89158 * 25 24 2 46 46 H 1.08005 * 117.95875 * 180.49237 * 26 25 24 47 47 H 1.08994 * 109.35718 * 222.65801 * 27 26 25 48 48 H 1.09000 * 109.35369 * 103.07834 * 27 26 25 49 49 H 1.09002 * 109.64165 * 289.75380 * 28 27 26 50 50 H 1.08998 * 109.64650 * 169.11538 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0365 1.4192 0.0000 4 8 2.6443 1.8462 0.9589 5 7 1.8142 2.2141 -1.0654 6 6 2.3062 3.5941 -1.0651 7 6 1.9235 4.2722 -2.3822 8 1 2.2945 3.6787 -3.2177 9 8 0.5010 4.3780 -2.4677 10 6 2.5430 5.6702 -2.4348 11 7 2.1750 6.3216 -3.6992 12 6 2.7540 7.6688 -3.7852 13 6 2.3564 8.3039 -5.0928 14 8 1.6588 7.6943 -5.8757 15 7 2.7750 9.5496 -5.3918 16 6 2.4137 10.1272 -6.5815 17 1 1.7932 9.5840 -7.2790 18 6 2.8448 11.4116 -6.8895 19 7 3.5993 12.0727 -6.0406 20 14 2.3519 12.1988 -8.5103 21 1 1.0756 12.9372 -8.3340 22 1 3.4132 13.1417 -8.9457 23 1 2.1749 11.1432 -9.5396 24 6 2.0487 -0.7313 1.2401 25 6 3.5260 -0.9670 1.1210 26 6 4.1845 -0.8957 0.0088 27 6 3.5643 -0.5576 -1.3153 28 6 2.0456 -0.7315 -1.2458 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.3283 1.8726 -1.8324 33 1 3.3910 3.5930 -0.9592 34 1 1.8603 4.1387 -0.2328 35 1 0.1014 4.8942 -1.7542 36 1 2.1719 6.2638 -1.5993 37 1 3.6279 5.5895 -2.3697 38 1 1.1728 6.3503 -3.8128 39 1 2.3851 8.2764 -2.9588 40 1 3.8405 7.6016 -3.7300 41 1 3.3325 10.0372 -4.7655 42 1 3.9006 12.9692 -6.2558 43 1 1.8494 -0.1276 2.1254 44 1 1.5367 -1.6889 1.3354 45 1 4.0738 -1.2116 2.0190 46 1 5.2462 -1.0921 0.0354 47 1 3.9689 -1.2174 -2.0827 48 1 3.7983 0.4760 -1.5704 49 1 1.8010 -1.7914 -1.1758 50 1 1.5867 -0.3045 -2.1375 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482732665.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:18 Heat of formation + Delta-G solvation = -150.465146 kcal Electronic energy + Delta-G solvation = -29179.581046 eV Core-core repulsion = 25011.979696 eV Total energy + Delta-G solvation = -4167.601349 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.74147 -40.21568 -39.29299 -38.18119 -36.30908 -35.67656 -35.33001 -33.88835 -33.27111 -31.81384 -31.13118 -28.62441 -27.53358 -26.65340 -24.96596 -24.05080 -23.42247 -22.73720 -21.12406 -20.80665 -19.92158 -19.32281 -18.25032 -17.47723 -17.32495 -17.26539 -17.03775 -16.66699 -16.38147 -16.16224 -15.90705 -15.79851 -15.39845 -15.09548 -14.86221 -14.71281 -14.55063 -14.35321 -14.03988 -13.75860 -13.55561 -13.45317 -13.33451 -13.18412 -13.12430 -12.96350 -12.92231 -12.82886 -12.70457 -12.42737 -12.42186 -12.12262 -11.97887 -11.51130 -11.35403 -11.22187 -11.09284 -10.63719 -10.33245 -10.12001 -10.02137 -9.82447 -9.33641 -8.47121 -5.95991 1.38086 1.42005 1.43532 1.54873 1.70101 2.04606 2.12421 2.29910 2.89929 3.20114 3.42558 3.49789 3.55273 3.66033 3.74297 3.88488 3.99026 4.08280 4.16059 4.22812 4.30941 4.38019 4.42747 4.43672 4.49826 4.55364 4.56304 4.68771 4.72062 4.75129 4.81892 4.87766 4.91228 5.00503 5.08851 5.11275 5.23269 5.25161 5.30440 5.40560 5.42886 5.74347 5.85976 6.07804 6.08037 6.39890 6.55839 6.59587 6.77464 7.12152 7.28255 7.55596 8.11024 8.70205 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.030389 B = 0.001606 C = 0.001595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.161587 B =17426.708495 C =17547.418846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.078 4.078 3 C 0.524 3.476 4 O -0.580 6.580 5 N -0.714 5.714 6 C 0.097 3.903 7 C 0.115 3.885 8 H 0.107 0.893 9 O -0.565 6.565 10 C 0.031 3.969 11 N -0.679 5.679 12 C 0.065 3.935 13 C 0.436 3.564 14 O -0.623 6.623 15 N -0.573 5.573 16 C -0.335 4.335 17 H 0.079 0.921 18 C -0.013 4.013 19 N -0.920 5.920 20 Si 0.994 3.006 21 H -0.270 1.270 22 H -0.271 1.271 23 H -0.273 1.273 24 C -0.070 4.070 25 C -0.151 4.151 26 C -0.174 4.174 27 C -0.098 4.098 28 C -0.105 4.105 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.053 0.947 32 H 0.412 0.588 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.386 0.614 36 H 0.050 0.950 37 H 0.091 0.909 38 H 0.349 0.651 39 H 0.067 0.933 40 H 0.104 0.896 41 H 0.397 0.603 42 H 0.278 0.722 43 H 0.065 0.935 44 H 0.102 0.898 45 H 0.101 0.899 46 H 0.101 0.899 47 H 0.088 0.912 48 H 0.059 0.941 49 H 0.093 0.907 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.141 -25.805 15.931 30.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.081 4.081 3 C 0.312 3.688 4 O -0.459 6.459 5 N -0.366 5.366 6 C -0.028 4.028 7 C 0.055 3.945 8 H 0.125 0.875 9 O -0.371 6.371 10 C -0.099 4.099 11 N -0.312 5.312 12 C -0.068 4.068 13 C 0.224 3.776 14 O -0.510 6.510 15 N -0.210 5.210 16 C -0.464 4.464 17 H 0.097 0.903 18 C -0.213 4.213 19 N -0.561 5.561 20 Si 0.817 3.183 21 H -0.196 1.196 22 H -0.195 1.195 23 H -0.198 1.198 24 C -0.107 4.107 25 C -0.169 4.169 26 C -0.193 4.193 27 C -0.135 4.135 28 C -0.142 4.142 29 H 0.090 0.910 30 H 0.107 0.893 31 H 0.072 0.928 32 H 0.249 0.751 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.235 0.765 36 H 0.068 0.932 37 H 0.109 0.891 38 H 0.168 0.832 39 H 0.085 0.915 40 H 0.122 0.878 41 H 0.230 0.770 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.120 0.880 45 H 0.119 0.881 46 H 0.119 0.881 47 H 0.106 0.894 48 H 0.077 0.923 49 H 0.111 0.889 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.478 -26.343 15.197 30.513 hybrid contribution -0.225 1.775 0.520 1.863 sum -2.703 -24.568 15.717 29.290 Atomic orbital electron populations 1.21849 0.90531 1.04369 1.02780 1.20940 0.98115 0.90469 0.98561 1.20910 0.78127 0.88193 0.81597 1.90677 1.42665 1.76555 1.36005 1.45825 1.58220 1.12400 1.20146 1.21898 1.00148 0.82761 0.97963 1.21984 0.81192 0.94737 0.96589 0.87485 1.86627 1.19284 1.76758 1.54457 1.22631 1.02263 0.94922 0.90047 1.59947 1.18007 1.18156 1.35132 1.21546 1.01731 0.90081 0.93427 1.20909 0.84121 0.82244 0.90358 1.90499 1.43250 1.63935 1.53285 1.41934 1.46614 1.13835 1.18656 1.19675 1.31188 0.98847 0.96736 0.90321 1.26049 0.96202 0.96420 1.02636 1.69671 1.35408 1.13528 1.37493 0.84914 0.78201 0.77853 0.77287 1.19576 1.19541 1.19816 1.20379 0.93176 1.00558 0.96559 1.22075 0.96683 1.00338 0.97798 1.22116 0.99802 1.02170 0.95167 1.20535 0.95841 1.01441 0.95698 1.21749 0.94628 1.01958 0.95881 0.90989 0.89260 0.92758 0.75076 0.91022 0.91216 0.76490 0.93220 0.89106 0.83162 0.91494 0.87770 0.76958 0.91292 0.91638 0.88029 0.88057 0.88139 0.89371 0.92288 0.88862 0.89538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 8.46 71.98 0.61 -0.61 16 2 C -0.08 -0.99 0.66 -52.79 -0.03 -1.03 16 3 C 0.52 9.84 4.73 87.66 0.41 10.26 16 4 O -0.58 -15.81 15.33 -3.06 -0.05 -15.86 16 5 N -0.71 -10.80 5.25 -463.05 -2.43 -13.22 16 6 C 0.10 1.55 5.31 86.38 0.46 2.01 16 7 C 0.11 1.95 3.27 30.60 0.10 2.05 16 8 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 9 O -0.56 -10.06 12.62 -148.98 -1.88 -11.94 16 10 C 0.03 0.62 5.39 86.30 0.47 1.09 16 11 N -0.68 -20.41 6.12 -517.92 -3.17 -23.58 16 12 C 0.06 2.15 6.17 85.56 0.53 2.68 16 13 C 0.44 20.74 7.82 87.66 0.69 21.43 16 14 O -0.62 -34.77 15.78 -3.08 -0.05 -34.82 16 15 N -0.57 -29.44 5.29 -306.98 -1.62 -31.06 16 16 C -0.33 -19.10 9.68 84.04 0.81 -18.28 16 17 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 18 C -0.01 -0.71 5.50 84.93 0.47 -0.25 16 19 N -0.92 -49.62 13.05 21.66 0.28 -49.34 16 20 Si 0.99 42.95 29.55 68.60 2.03 44.98 16 21 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 22 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 23 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 24 C -0.07 -0.99 4.55 29.66 0.14 -0.85 16 25 C -0.15 -2.51 9.08 27.03 0.25 -2.26 16 26 C -0.17 -2.84 9.61 27.03 0.26 -2.58 16 27 C -0.10 -1.31 5.59 29.66 0.17 -1.15 16 28 C -0.10 -1.02 4.71 30.74 0.14 -0.88 16 29 H 0.07 0.54 8.01 -2.38 -0.02 0.52 16 30 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.41 4.92 7.62 -92.70 -0.71 4.21 16 33 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.39 4.62 9.05 -74.06 -0.67 3.95 16 36 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.35 11.36 7.82 -89.69 -0.70 10.66 16 39 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 41 H 0.40 19.26 7.90 -92.71 -0.73 18.53 16 42 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 43 H 0.07 1.15 7.67 -2.39 -0.02 1.13 16 44 H 0.10 0.96 8.11 -2.39 -0.02 0.94 16 45 H 0.10 1.62 8.06 -2.91 -0.02 1.59 16 46 H 0.10 1.56 8.06 -2.91 -0.02 1.54 16 47 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.06 0.96 7.33 -2.39 -0.02 0.94 16 49 H 0.09 0.67 8.12 -2.39 -0.02 0.65 16 50 H 0.09 0.61 7.55 -2.39 -0.02 0.59 16 Total: -1.00 -74.99 407.03 -3.26 -78.26 By element: Atomic # 1 Polarization: 46.79 SS G_CDS: -1.83 Total: 44.95 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: 5.46 Total: 11.63 kcal Atomic # 7 Polarization: -110.26 SS G_CDS: -6.94 Total: -117.20 kcal Atomic # 8 Polarization: -60.64 SS G_CDS: -1.98 Total: -62.61 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -74.99 -3.26 -78.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482732665.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.206 kcal (2) G-P(sol) polarization free energy of solvation -74.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds