Wall clock time and date at job start Sat Apr 11 2020 05:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86803 * 119.99611 * 2 1 4 4 H 1.48497 * 109.47616 * 240.00130 * 3 2 1 5 5 H 1.48496 * 109.47325 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47000 * 120.00268 * 3 2 1 7 7 C 1.38948 * 120.00492 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00263 * 179.97438 * 7 2 1 9 9 N 1.37097 * 119.99682 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99944 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99983 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00037 * 180.02562 * 10 9 7 13 13 N 1.46906 * 109.47140 * 180.02562 * 12 10 9 14 14 C 1.46898 * 110.99888 * 180.02562 * 13 12 10 15 15 C 1.53007 * 109.46764 * 179.97438 * 14 13 12 16 16 H 1.08998 * 109.46991 * 294.99668 * 15 14 13 17 17 N 1.46495 * 109.47126 * 54.99904 * 15 14 13 18 18 C 1.34774 * 120.00080 * 204.99801 * 17 15 14 19 19 O 1.21279 * 120.00299 * 0.02562 * 18 17 15 20 20 C 1.50701 * 120.00235 * 180.02562 * 18 17 15 21 21 C 1.52997 * 109.47218 * 180.02562 * 20 18 17 22 22 H 1.09001 * 109.87108 * 53.99208 * 21 20 18 23 23 C 1.54100 * 109.88032 * 174.99852 * 21 20 18 24 24 C 1.54812 * 104.19090 * 121.45042 * 23 21 20 25 25 C 1.54992 * 102.08906 * 20.88466 * 24 23 21 26 26 O 1.43742 * 109.87695 * 292.82920 * 21 20 18 27 27 C 1.53003 * 109.46940 * 175.00201 * 15 14 13 28 28 C 1.53000 * 117.49685 * 248.74734 * 27 15 14 29 29 C 1.52999 * 117.49726 * 180.08714 * 27 15 14 30 30 H 0.97002 * 120.00294 * 359.97438 * 1 2 3 31 31 H 0.96996 * 120.00211 * 0.02562 * 9 7 2 32 32 H 1.09000 * 109.47247 * 60.00371 * 12 10 9 33 33 H 1.09001 * 109.47358 * 299.99798 * 12 10 9 34 34 H 1.00902 * 110.99923 * 303.95945 * 13 12 10 35 35 H 1.08995 * 109.47296 * 299.99911 * 14 13 12 36 36 H 1.08997 * 109.47334 * 60.00212 * 14 13 12 37 37 H 0.97005 * 120.00095 * 25.00452 * 17 15 14 38 38 H 1.09005 * 109.46729 * 299.99661 * 20 18 17 39 39 H 1.09000 * 109.47338 * 59.99628 * 20 18 17 40 40 H 1.08998 * 110.48752 * 240.13213 * 23 21 20 41 41 H 1.09004 * 110.48974 * 2.64258 * 23 21 20 42 42 H 1.09001 * 110.90708 * 139.07853 * 24 23 21 43 43 H 1.08996 * 110.90860 * 262.68238 * 24 23 21 44 44 H 1.08996 * 110.62069 * 81.47467 * 25 24 23 45 45 H 1.08999 * 110.61697 * 204.31701 * 25 24 23 46 46 H 1.09001 * 115.54963 * 34.40976 * 27 15 14 47 47 H 1.09009 * 117.49799 * 359.97438 * 28 27 15 48 48 H 1.08993 * 117.50116 * 145.01785 * 28 27 15 49 49 H 1.08998 * 117.49835 * 214.97752 * 29 27 15 50 50 H 1.09000 * 117.49653 * 359.97438 * 29 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1017 1.6967 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0890 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0016 11 8 3.2104 -3.5577 -0.0021 12 6 1.2440 -4.8629 -0.0022 13 7 2.1987 -5.9795 -0.0027 14 6 1.4984 -7.2708 -0.0039 15 6 2.5235 -8.4067 -0.0050 16 1 3.0892 -8.3846 -0.9364 17 7 3.4388 -8.2396 1.1265 18 6 4.6778 -8.7674 1.0746 19 8 5.0352 -9.3804 0.0910 20 6 5.6193 -8.5960 2.2388 21 6 6.9491 -9.2845 1.9250 22 1 7.3422 -8.9166 0.9773 23 6 7.9609 -9.0093 3.0542 24 6 8.3489 -10.4174 3.5677 25 6 7.9653 -11.3181 2.3661 26 8 6.7589 -10.7078 1.8592 27 6 1.7982 -9.7482 0.1194 28 6 1.9773 -10.5298 1.4225 29 6 2.6553 -11.0154 0.1389 30 1 -0.4851 0.8400 0.0004 31 1 0.3535 -2.3906 -0.0005 32 1 0.6170 -4.9201 -0.8920 33 1 0.6177 -4.9213 0.8880 34 1 2.8336 -5.9120 -0.7840 35 1 0.8732 -7.3459 0.8858 36 1 0.8739 -7.3446 -0.8941 37 1 3.1532 -7.7491 1.9131 38 1 5.7926 -7.5339 2.4125 39 1 5.1797 -9.0430 3.1305 40 1 8.8366 -8.4909 2.6637 41 1 7.4963 -8.4258 3.8491 42 1 9.4179 -10.4760 3.7720 43 1 7.7700 -10.6818 4.4525 44 1 8.7499 -11.3036 1.6096 45 1 7.7721 -12.3384 2.6975 46 1 0.8269 -9.8049 -0.3720 47 1 2.6121 -10.0885 2.1909 48 1 1.1240 -11.1010 1.7880 49 1 2.2477 -11.9060 -0.3395 50 1 3.7357 -10.8935 0.0626 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483547230.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:26 Heat of formation + Delta-G solvation = -93.757630 kcal Electronic energy + Delta-G solvation = -29727.154633 eV Core-core repulsion = 25562.012306 eV Total energy + Delta-G solvation = -4165.142327 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.41235 -39.35507 -38.28221 -37.24917 -35.47607 -33.94609 -33.40927 -32.54266 -31.79066 -31.23818 -29.58337 -26.90043 -26.05960 -24.13943 -22.65973 -22.53449 -22.00509 -21.43043 -20.55121 -19.91184 -19.23253 -17.92153 -17.31347 -16.66817 -16.54590 -16.21450 -15.91320 -15.63994 -15.57801 -14.98875 -14.59158 -14.52366 -14.22895 -13.85398 -13.81366 -13.62772 -13.35483 -13.32773 -12.86405 -12.67569 -12.17409 -12.13973 -11.93908 -11.81823 -11.63379 -11.55890 -11.50961 -11.39442 -11.37965 -11.23711 -11.02935 -10.96052 -10.45772 -10.38610 -10.23074 -9.97075 -9.80628 -9.61962 -9.51517 -8.85432 -8.48757 -8.10547 -7.97717 -6.43180 -3.84117 2.77530 3.18840 3.21089 3.24691 3.28980 3.68706 3.80486 3.89326 4.05970 4.26232 4.28343 4.48283 4.66711 4.77830 4.79394 4.85360 4.89869 4.97605 5.03398 5.08691 5.14636 5.23350 5.27039 5.27958 5.33855 5.42960 5.45968 5.48714 5.50962 5.62172 5.65565 5.68179 5.74181 5.78127 5.90143 5.91048 5.94982 5.95905 6.10533 6.24111 6.38263 6.61308 6.78068 7.14778 7.53416 7.59721 7.66096 8.04432 8.39159 8.59640 9.16255 9.52679 10.04126 10.74428 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012685 B = 0.002283 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.843168 B =12262.223873 C =14123.520572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.300 4.300 8 H 0.102 0.898 9 N -0.564 5.564 10 C 0.440 3.560 11 O -0.583 6.583 12 C 0.051 3.949 13 N -0.666 5.666 14 C 0.052 3.948 15 C 0.181 3.819 16 H 0.088 0.912 17 N -0.708 5.708 18 C 0.518 3.482 19 O -0.532 6.532 20 C -0.143 4.143 21 C 0.095 3.905 22 H 0.077 0.923 23 C -0.155 4.155 24 C -0.155 4.155 25 C 0.044 3.956 26 O -0.359 6.359 27 C -0.169 4.169 28 C -0.174 4.174 29 C -0.182 4.182 30 H 0.272 0.728 31 H 0.392 0.608 32 H 0.043 0.957 33 H 0.086 0.914 34 H 0.350 0.650 35 H 0.078 0.922 36 H 0.042 0.958 37 H 0.405 0.595 38 H 0.108 0.892 39 H 0.097 0.903 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.058 0.942 45 H 0.089 0.911 46 H 0.107 0.893 47 H 0.093 0.907 48 H 0.086 0.914 49 H 0.084 0.916 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.945 -21.898 6.617 23.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.429 4.429 8 H 0.120 0.880 9 N -0.200 5.200 10 C 0.226 3.774 11 O -0.467 6.467 12 C -0.082 4.082 13 N -0.298 5.298 14 C -0.078 4.078 15 C 0.076 3.924 16 H 0.106 0.894 17 N -0.359 5.359 18 C 0.305 3.695 19 O -0.409 6.409 20 C -0.183 4.183 21 C 0.036 3.964 22 H 0.095 0.905 23 C -0.193 4.193 24 C -0.193 4.193 25 C -0.033 4.033 26 O -0.278 6.278 27 C -0.189 4.189 28 C -0.211 4.211 29 C -0.219 4.219 30 H 0.082 0.918 31 H 0.225 0.775 32 H 0.061 0.939 33 H 0.104 0.896 34 H 0.170 0.830 35 H 0.096 0.904 36 H 0.060 0.940 37 H 0.240 0.760 38 H 0.127 0.873 39 H 0.115 0.885 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.076 0.924 45 H 0.107 0.893 46 H 0.125 0.875 47 H 0.111 0.889 48 H 0.105 0.895 49 H 0.102 0.898 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.772 -22.238 6.500 24.438 hybrid contribution -0.723 1.250 -0.401 1.498 sum 7.049 -20.988 6.099 22.965 Atomic orbital electron populations 1.69600 1.05930 1.28277 1.50513 1.25261 0.95638 0.99729 0.97309 0.85918 0.78764 0.80460 0.79079 1.19912 1.20977 1.19888 1.19645 0.93324 0.82247 1.47719 0.88001 1.41860 1.09193 1.04610 1.64360 1.19805 0.88390 0.84712 0.84519 1.90527 1.13739 1.87058 1.55395 1.21675 0.94329 0.90967 1.01223 1.60065 1.18627 0.99632 1.51521 1.22235 0.95271 0.88837 1.01496 1.20374 0.89734 0.91504 0.90813 0.89370 1.45830 1.13526 1.56179 1.20408 1.20418 0.82123 0.78298 0.88690 1.90642 1.75910 1.40726 1.33660 1.21930 0.95144 1.03016 0.98204 1.22436 0.93426 0.82349 0.98167 0.90547 1.23046 0.99633 0.97856 0.98716 1.23129 1.02038 0.95015 0.99139 1.23525 0.88061 0.97538 0.94206 1.89003 1.36155 1.17428 1.85173 1.22690 1.00773 0.92722 1.02712 1.22881 1.03011 1.03675 0.91565 1.23359 1.01628 0.96446 1.00465 0.91812 0.77470 0.93859 0.89606 0.83016 0.90369 0.93988 0.76007 0.87343 0.88490 0.90375 0.90106 0.90371 0.90572 0.92362 0.89252 0.87512 0.88876 0.89539 0.89782 0.86044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.36 13.05 55.50 0.72 -23.63 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.93 29.55 -169.99 -5.02 15.91 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 7 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 8 H 0.10 2.96 7.16 -52.48 -0.38 2.58 16 9 N -0.56 -14.09 5.29 -10.96 -0.06 -14.15 16 10 C 0.44 10.16 7.82 -10.99 -0.09 10.08 16 11 O -0.58 -15.55 15.78 5.54 0.09 -15.46 16 12 C 0.05 0.85 6.17 -4.97 -0.03 0.82 16 13 N -0.67 -10.06 5.85 -115.05 -0.67 -10.73 16 14 C 0.05 0.59 5.23 -3.82 -0.02 0.57 16 15 C 0.18 2.10 2.67 -67.93 -0.18 1.92 16 16 H 0.09 1.21 7.58 -51.93 -0.39 0.82 16 17 N -0.71 -8.03 3.34 -53.81 -0.18 -8.21 16 18 C 0.52 6.56 6.57 -10.99 -0.07 6.49 16 19 O -0.53 -8.48 12.54 -5.77 -0.07 -8.55 16 20 C -0.14 -1.41 5.19 -27.88 -0.14 -1.55 16 21 C 0.09 0.98 2.93 -26.16 -0.08 0.91 16 22 H 0.08 0.91 7.93 -51.93 -0.41 0.50 16 23 C -0.15 -1.17 6.64 -25.20 -0.17 -1.34 16 24 C -0.16 -1.05 7.15 -24.72 -0.18 -1.22 16 25 C 0.04 0.37 7.72 38.21 0.29 0.66 16 26 O -0.36 -4.31 10.58 -46.56 -0.49 -4.80 16 27 C -0.17 -1.79 5.71 -90.62 -0.52 -2.30 16 28 C -0.17 -1.78 9.74 -26.69 -0.26 -2.04 16 29 C -0.18 -2.13 9.82 -26.69 -0.26 -2.39 16 30 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.39 9.37 7.90 -40.82 -0.32 9.04 16 32 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.35 5.83 8.43 -39.29 -0.33 5.50 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.40 4.17 8.60 -40.82 -0.35 3.82 16 38 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.54 7.70 -51.93 -0.40 0.14 16 42 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.11 1.00 8.11 -51.93 -0.42 0.58 16 47 H 0.09 0.97 6.67 -51.92 -0.35 0.62 16 48 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 50 H 0.12 1.75 5.02 -51.93 -0.26 1.49 16 LS Contribution 405.09 15.07 6.10 6.10 Total: -1.00 -32.92 405.09 -9.77 -42.69 By element: Atomic # 1 Polarization: 26.43 SS G_CDS: -8.24 Total: 18.18 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -1.94 Total: 2.65 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: -0.19 Total: -56.72 kcal Atomic # 8 Polarization: -28.34 SS G_CDS: -0.48 Total: -28.81 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.92 -9.77 -42.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483547230.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.071 kcal (2) G-P(sol) polarization free energy of solvation -32.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds