Wall clock time and date at job start Sat Apr 11 2020 05:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86803 * 119.99611 * 2 1 4 4 H 1.48497 * 109.47616 * 240.00130 * 3 2 1 5 5 H 1.48496 * 109.47325 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47000 * 120.00268 * 3 2 1 7 7 C 1.38948 * 120.00492 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00263 * 179.97438 * 7 2 1 9 9 N 1.37097 * 119.99682 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99944 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99983 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00037 * 180.02562 * 10 9 7 13 13 N 1.46906 * 109.47140 * 180.02562 * 12 10 9 14 14 C 1.46898 * 110.99888 * 180.02562 * 13 12 10 15 15 C 1.53007 * 109.46764 * 179.97438 * 14 13 12 16 16 H 1.08998 * 109.46991 * 294.99668 * 15 14 13 17 17 N 1.46495 * 109.47126 * 54.99904 * 15 14 13 18 18 C 1.34774 * 120.00080 * 204.99801 * 17 15 14 19 19 O 1.21279 * 120.00299 * 0.02562 * 18 17 15 20 20 C 1.50701 * 120.00235 * 180.02562 * 18 17 15 21 21 C 1.52997 * 109.47218 * 180.02562 * 20 18 17 22 22 H 1.09001 * 109.87108 * 53.99208 * 21 20 18 23 23 C 1.54100 * 109.88032 * 174.99852 * 21 20 18 24 24 C 1.54812 * 104.19090 * 121.45042 * 23 21 20 25 25 C 1.54992 * 102.08906 * 20.88466 * 24 23 21 26 26 O 1.43742 * 109.87695 * 292.82920 * 21 20 18 27 27 C 1.53003 * 109.46940 * 175.00201 * 15 14 13 28 28 C 1.53000 * 117.49685 * 248.74734 * 27 15 14 29 29 C 1.52999 * 117.49726 * 180.08714 * 27 15 14 30 30 H 0.97002 * 120.00294 * 359.97438 * 1 2 3 31 31 H 0.96996 * 120.00211 * 0.02562 * 9 7 2 32 32 H 1.09000 * 109.47247 * 60.00371 * 12 10 9 33 33 H 1.09001 * 109.47358 * 299.99798 * 12 10 9 34 34 H 1.00902 * 110.99923 * 303.95945 * 13 12 10 35 35 H 1.08995 * 109.47296 * 299.99911 * 14 13 12 36 36 H 1.08997 * 109.47334 * 60.00212 * 14 13 12 37 37 H 0.97005 * 120.00095 * 25.00452 * 17 15 14 38 38 H 1.09005 * 109.46729 * 299.99661 * 20 18 17 39 39 H 1.09000 * 109.47338 * 59.99628 * 20 18 17 40 40 H 1.08998 * 110.48752 * 240.13213 * 23 21 20 41 41 H 1.09004 * 110.48974 * 2.64258 * 23 21 20 42 42 H 1.09001 * 110.90708 * 139.07853 * 24 23 21 43 43 H 1.08996 * 110.90860 * 262.68238 * 24 23 21 44 44 H 1.08996 * 110.62069 * 81.47467 * 25 24 23 45 45 H 1.08999 * 110.61697 * 204.31701 * 25 24 23 46 46 H 1.09001 * 115.54963 * 34.40976 * 27 15 14 47 47 H 1.09009 * 117.49799 * 359.97438 * 28 27 15 48 48 H 1.08993 * 117.50116 * 145.01785 * 28 27 15 49 49 H 1.08998 * 117.49835 * 214.97752 * 29 27 15 50 50 H 1.09000 * 117.49653 * 359.97438 * 29 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1017 1.6967 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0890 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0016 11 8 3.2104 -3.5577 -0.0021 12 6 1.2440 -4.8629 -0.0022 13 7 2.1987 -5.9795 -0.0027 14 6 1.4984 -7.2708 -0.0039 15 6 2.5235 -8.4067 -0.0050 16 1 3.0892 -8.3846 -0.9364 17 7 3.4388 -8.2396 1.1265 18 6 4.6778 -8.7674 1.0746 19 8 5.0352 -9.3804 0.0910 20 6 5.6193 -8.5960 2.2388 21 6 6.9491 -9.2845 1.9250 22 1 7.3422 -8.9166 0.9773 23 6 7.9609 -9.0093 3.0542 24 6 8.3489 -10.4174 3.5677 25 6 7.9653 -11.3181 2.3661 26 8 6.7589 -10.7078 1.8592 27 6 1.7982 -9.7482 0.1194 28 6 1.9773 -10.5298 1.4225 29 6 2.6553 -11.0154 0.1389 30 1 -0.4851 0.8400 0.0004 31 1 0.3535 -2.3906 -0.0005 32 1 0.6170 -4.9201 -0.8920 33 1 0.6177 -4.9213 0.8880 34 1 2.8336 -5.9120 -0.7840 35 1 0.8732 -7.3459 0.8858 36 1 0.8739 -7.3446 -0.8941 37 1 3.1532 -7.7491 1.9131 38 1 5.7926 -7.5339 2.4125 39 1 5.1797 -9.0430 3.1305 40 1 8.8366 -8.4909 2.6637 41 1 7.4963 -8.4258 3.8491 42 1 9.4179 -10.4760 3.7720 43 1 7.7700 -10.6818 4.4525 44 1 8.7499 -11.3036 1.6096 45 1 7.7721 -12.3384 2.6975 46 1 0.8269 -9.8049 -0.3720 47 1 2.6121 -10.0885 2.1909 48 1 1.1240 -11.1010 1.7880 49 1 2.2477 -11.9060 -0.3395 50 1 3.7357 -10.8935 0.0626 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483547230.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:25 Heat of formation + Delta-G solvation = -117.513925 kcal Electronic energy + Delta-G solvation = -29728.184783 eV Core-core repulsion = 25562.012306 eV Total energy + Delta-G solvation = -4166.172477 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.33916 -40.22993 -39.99954 -38.25266 -36.68370 -35.83041 -34.51598 -33.34184 -33.22710 -32.50623 -30.68619 -28.09789 -27.21296 -25.78297 -23.54370 -23.33687 -22.95091 -22.15423 -21.44264 -21.11099 -20.73228 -19.88968 -18.27342 -17.88413 -17.48207 -17.33186 -16.96860 -16.66304 -16.43203 -16.40834 -16.10779 -15.91468 -15.42747 -15.06367 -14.94797 -14.64640 -14.50157 -14.46928 -14.05383 -13.65830 -13.44807 -13.36300 -13.05819 -12.98787 -12.76230 -12.73382 -12.55596 -12.54679 -12.42216 -12.20643 -12.13381 -12.12299 -11.95743 -11.55628 -11.49059 -11.25536 -10.87476 -10.63458 -10.59570 -10.32830 -10.00275 -9.82509 -9.33896 -8.45683 -5.94170 1.40186 1.42201 1.52793 1.80340 2.07585 2.29049 2.31763 2.82695 2.98703 3.03487 3.21879 3.50816 3.64305 3.78343 3.81790 3.99267 4.01412 4.06918 4.12130 4.15721 4.27992 4.31572 4.34376 4.41384 4.47670 4.52210 4.58753 4.65283 4.67321 4.70819 4.79945 4.85183 4.86390 4.95074 4.99746 5.02193 5.05769 5.13257 5.23873 5.27343 5.41533 5.43620 5.67115 5.87881 6.05673 6.09816 6.32381 6.61595 6.73026 7.13968 7.44600 7.58258 8.13745 8.71358 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012685 B = 0.002283 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.843168 B =12262.223873 C =14123.520572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.991 3.009 4 H -0.273 1.273 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.333 4.333 8 H 0.078 0.922 9 N -0.574 5.574 10 C 0.438 3.562 11 O -0.623 6.623 12 C 0.066 3.934 13 N -0.675 5.675 14 C 0.060 3.940 15 C 0.184 3.816 16 H 0.061 0.939 17 N -0.701 5.701 18 C 0.511 3.489 19 O -0.571 6.571 20 C -0.138 4.138 21 C 0.090 3.910 22 H 0.048 0.952 23 C -0.151 4.151 24 C -0.147 4.147 25 C 0.034 3.966 26 O -0.389 6.389 27 C -0.162 4.162 28 C -0.161 4.161 29 C -0.199 4.199 30 H 0.277 0.723 31 H 0.397 0.603 32 H 0.065 0.935 33 H 0.110 0.890 34 H 0.339 0.661 35 H 0.097 0.903 36 H 0.058 0.942 37 H 0.412 0.588 38 H 0.121 0.879 39 H 0.117 0.883 40 H 0.083 0.917 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.083 0.917 44 H 0.057 0.943 45 H 0.100 0.900 46 H 0.126 0.874 47 H 0.090 0.910 48 H 0.105 0.895 49 H 0.093 0.907 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.870 -22.100 8.129 24.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.213 4.213 3 Si 0.815 3.185 4 H -0.199 1.199 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.463 4.463 8 H 0.096 0.904 9 N -0.211 5.211 10 C 0.225 3.775 11 O -0.510 6.510 12 C -0.066 4.066 13 N -0.307 5.307 14 C -0.069 4.069 15 C 0.078 3.922 16 H 0.079 0.921 17 N -0.353 5.353 18 C 0.299 3.701 19 O -0.451 6.451 20 C -0.178 4.178 21 C 0.032 3.968 22 H 0.066 0.934 23 C -0.188 4.188 24 C -0.184 4.184 25 C -0.043 4.043 26 O -0.309 6.309 27 C -0.182 4.182 28 C -0.198 4.198 29 C -0.236 4.236 30 H 0.087 0.913 31 H 0.231 0.769 32 H 0.083 0.917 33 H 0.128 0.872 34 H 0.157 0.843 35 H 0.116 0.884 36 H 0.076 0.924 37 H 0.248 0.752 38 H 0.139 0.861 39 H 0.135 0.865 40 H 0.101 0.899 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.102 0.898 44 H 0.075 0.925 45 H 0.119 0.881 46 H 0.144 0.856 47 H 0.108 0.892 48 H 0.123 0.877 49 H 0.111 0.889 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.659 -22.450 8.034 24.757 hybrid contribution -0.360 1.224 -0.913 1.569 sum 6.299 -21.226 7.121 23.258 Atomic orbital electron populations 1.69659 1.06762 1.29318 1.50337 1.26013 0.96543 1.02355 0.96365 0.85017 0.77785 0.76797 0.78922 1.19859 1.19529 1.19654 1.19604 0.92649 0.84090 1.49931 0.90423 1.41930 1.09338 1.04709 1.65142 1.20925 0.88265 0.86213 0.82081 1.90500 1.15912 1.87973 1.56585 1.21540 0.93895 0.87833 1.03344 1.60064 1.18726 1.00671 1.51191 1.22263 0.95010 0.86534 1.03100 1.20298 0.89587 0.92488 0.89840 0.92080 1.45811 1.13222 1.55720 1.20504 1.20945 0.82653 0.77609 0.88934 1.90631 1.76662 1.42450 1.35319 1.21972 0.94372 1.03840 0.97613 1.22446 0.94378 0.81895 0.98099 0.93350 1.23041 0.99053 0.98744 0.97984 1.23113 1.03279 0.93659 0.98389 1.23738 0.87103 0.98421 0.95005 1.88972 1.37854 1.18295 1.85739 1.22689 1.00927 0.91363 1.03193 1.22930 1.03000 1.02952 0.90891 1.23251 1.00198 0.97625 1.02517 0.91322 0.76948 0.91677 0.87167 0.84317 0.88438 0.92415 0.75167 0.86146 0.86515 0.89864 0.88684 0.88562 0.89784 0.92489 0.88146 0.85590 0.89165 0.87680 0.88893 0.89031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.08 13.05 21.66 0.28 -48.79 16 2 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 3 Si 0.99 42.57 29.55 68.60 2.03 44.60 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 6 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 7 C -0.33 -18.71 9.68 84.04 0.81 -17.89 16 8 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 9 N -0.57 -28.81 5.29 -306.98 -1.62 -30.43 16 10 C 0.44 20.14 7.82 87.66 0.69 20.83 16 11 O -0.62 -33.81 15.78 -3.08 -0.05 -33.86 16 12 C 0.07 2.09 6.17 85.56 0.53 2.62 16 13 N -0.67 -19.44 5.85 -517.92 -3.03 -22.47 16 14 C 0.06 1.23 5.23 86.31 0.45 1.68 16 15 C 0.18 4.11 2.67 45.00 0.12 4.23 16 16 H 0.06 1.73 7.58 -2.39 -0.02 1.71 16 17 N -0.70 -15.56 3.34 -442.53 -1.48 -17.04 16 18 C 0.51 13.25 6.57 87.66 0.58 13.82 16 19 O -0.57 -19.30 12.54 7.81 0.10 -19.20 16 20 C -0.14 -2.70 5.19 29.85 0.15 -2.54 16 21 C 0.09 1.92 2.93 30.97 0.09 2.01 16 22 H 0.05 1.26 7.93 -2.39 -0.02 1.24 16 23 C -0.15 -2.12 6.64 31.58 0.21 -1.91 16 24 C -0.15 -1.75 7.15 31.89 0.23 -1.52 16 25 C 0.03 0.56 7.72 72.66 0.56 1.12 16 26 O -0.39 -9.63 10.58 -138.15 -1.46 -11.09 16 27 C -0.16 -3.16 5.71 -10.79 -0.06 -3.22 16 28 C -0.16 -2.98 9.74 30.62 0.30 -2.69 16 29 C -0.20 -4.60 9.82 30.62 0.30 -4.30 16 30 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 31 H 0.40 18.83 7.90 -92.71 -0.73 18.10 16 32 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 34 H 0.34 11.22 8.43 -89.69 -0.76 10.46 16 35 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.41 7.92 8.60 -92.70 -0.80 7.13 16 38 H 0.12 2.03 8.14 -2.38 -0.02 2.01 16 39 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.09 1.07 7.70 -2.38 -0.02 1.05 16 42 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.13 2.00 8.11 -2.39 -0.02 1.98 16 47 H 0.09 1.73 6.67 -2.38 -0.02 1.72 16 48 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 49 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 50 H 0.09 2.77 5.02 -2.39 -0.01 2.76 16 Total: -1.00 -73.49 405.09 -1.12 -74.61 By element: Atomic # 1 Polarization: 52.97 SS G_CDS: -1.31 Total: 51.66 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: 5.42 Total: 12.02 kcal Atomic # 7 Polarization: -112.89 SS G_CDS: -5.85 Total: -118.74 kcal Atomic # 8 Polarization: -62.73 SS G_CDS: -1.41 Total: -64.14 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -73.49 -1.12 -74.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483547230.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.907 kcal (2) G-P(sol) polarization free energy of solvation -73.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds