Wall clock time and date at job start Sat Apr 11 2020 05:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86795 * 120.00368 * 2 1 4 4 H 1.48498 * 109.47527 * 270.00103 * 3 2 1 5 5 H 1.48505 * 109.46906 * 30.00233 * 3 2 1 6 6 H 1.48499 * 109.47065 * 150.00001 * 3 2 1 7 7 C 1.38956 * 119.99431 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00420 * 0.02562 * 7 2 1 9 9 N 1.37100 * 119.99812 * 179.97438 * 7 2 1 10 10 C 1.34773 * 120.00290 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99680 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00196 * 180.02562 * 10 9 7 13 13 N 1.46905 * 109.47066 * 180.02562 * 12 10 9 14 14 C 1.46901 * 110.99870 * 180.02562 * 13 12 10 15 15 C 1.53004 * 109.46916 * 180.02562 * 14 13 12 16 16 H 1.08999 * 109.46893 * 294.99849 * 15 14 13 17 17 N 1.46498 * 109.46921 * 54.99831 * 15 14 13 18 18 C 1.34779 * 119.99331 * 204.99566 * 17 15 14 19 19 O 1.21273 * 120.00521 * 0.02562 * 18 17 15 20 20 C 1.50701 * 119.99711 * 179.97438 * 18 17 15 21 21 C 1.52993 * 109.47253 * 180.02562 * 20 18 17 22 22 H 1.09005 * 109.82464 * 305.70448 * 21 20 18 23 23 C 1.54388 * 109.83434 * 184.81865 * 21 20 18 24 24 C 1.55446 * 102.18550 * 219.18396 * 23 21 20 25 25 C 1.54947 * 100.99325 * 34.03934 * 24 23 21 26 26 O 1.43243 * 109.83099 * 66.59023 * 21 20 18 27 27 C 1.52997 * 109.46820 * 175.00024 * 15 14 13 28 28 C 1.53006 * 117.49663 * 248.61942 * 27 15 14 29 29 C 1.53000 * 59.99927 * 252.50879 * 28 27 15 30 30 H 0.97004 * 119.99652 * 359.97438 * 1 2 3 31 31 H 0.97009 * 120.00081 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.47558 * 60.00201 * 12 10 9 33 33 H 1.08998 * 109.47216 * 299.99863 * 12 10 9 34 34 H 1.00901 * 110.99869 * 56.04737 * 13 12 10 35 35 H 1.09004 * 109.47031 * 299.99620 * 14 13 12 36 36 H 1.08995 * 109.47111 * 59.99900 * 14 13 12 37 37 H 0.96994 * 120.00657 * 24.99927 * 17 15 14 38 38 H 1.08998 * 109.47409 * 300.01004 * 20 18 17 39 39 H 1.09007 * 109.47101 * 60.00551 * 20 18 17 40 40 H 1.09007 * 110.83986 * 337.31998 * 23 21 20 41 41 H 1.08995 * 110.84764 * 100.93979 * 23 21 20 42 42 H 1.09002 * 111.06070 * 276.11733 * 24 23 21 43 43 H 1.09007 * 111.18317 * 152.00306 * 24 23 21 44 44 H 1.09001 * 110.31161 * 204.69153 * 25 24 23 45 45 H 1.08998 * 110.39539 * 82.56290 * 25 24 23 46 46 H 1.08998 * 115.55471 * 34.32766 * 27 15 14 47 47 H 1.08995 * 117.49942 * 0.02562 * 28 27 15 48 48 H 1.09000 * 117.49879 * 145.02365 * 28 27 15 49 49 H 1.08994 * 117.50324 * 252.50401 * 29 28 27 50 50 H 1.09005 * 117.49455 * 107.48841 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4958 2.0464 -1.4000 5 1 1.4457 2.6526 0.7001 6 1 3.5457 1.4400 0.7000 7 6 2.0088 -1.2035 -0.0005 8 1 1.4688 -2.1387 -0.0014 9 7 3.3798 -1.2036 -0.0011 10 6 4.0536 -2.3707 -0.0021 11 8 3.4471 -3.4211 -0.0031 12 6 5.5606 -2.3708 -0.0021 13 7 6.0502 -3.7559 -0.0040 14 6 7.5187 -3.7951 -0.0034 15 6 7.9899 -5.2508 -0.0060 16 1 7.6883 -5.7320 0.9243 17 7 7.3871 -5.9571 -1.1391 18 6 7.2248 -7.2942 -1.0903 19 8 7.5774 -7.9125 -0.1084 20 6 6.6041 -8.0209 -2.2556 21 6 6.5359 -9.5175 -1.9455 22 1 7.5258 -9.8842 -1.6738 23 6 6.0137 -10.2848 -3.1793 24 6 5.0900 -11.3552 -2.5332 25 6 4.5296 -10.5692 -1.3212 26 8 5.6195 -9.7496 -0.8694 27 6 9.5142 -5.2931 -0.1312 28 6 10.1011 -5.8385 -1.4346 29 6 10.1834 -6.6688 -0.1522 30 1 -0.4850 0.8401 0.0004 31 1 3.8649 -0.3635 -0.0007 32 1 5.9241 -1.8578 0.8883 33 1 5.9240 -1.8562 -0.8916 34 1 5.6747 -4.2711 -0.7861 35 1 7.8960 -3.2899 -0.8926 36 1 7.8952 -3.2925 0.8874 37 1 7.1047 -5.4627 -1.9243 38 1 5.5976 -7.6394 -2.4272 39 1 7.2100 -7.8615 -3.1476 40 1 5.4439 -9.6250 -3.8337 41 1 6.8351 -10.7547 -3.7201 42 1 5.6640 -12.2227 -2.2075 43 1 4.2911 -11.6489 -3.2142 44 1 4.2219 -11.2571 -0.5337 45 1 3.6896 -9.9462 -1.6280 46 1 10.0491 -4.4807 0.3608 47 1 9.4013 -6.1668 -2.2031 48 1 11.0223 -5.3849 -1.8005 49 1 11.1586 -6.7615 0.3257 50 1 9.5377 -7.5438 -0.0768 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483547232.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:31 Heat of formation + Delta-G solvation = -112.409379 kcal Electronic energy + Delta-G solvation = -29864.034049 eV Core-core repulsion = 25698.082921 eV Total energy + Delta-G solvation = -4165.951128 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.41912 -40.35582 -40.10007 -38.29119 -36.75254 -35.90335 -34.55611 -33.74313 -33.31483 -32.56293 -30.77854 -28.26242 -27.36828 -25.65594 -23.47922 -23.23393 -22.89596 -22.37796 -21.43842 -21.20366 -20.87976 -20.26345 -18.29540 -17.96849 -17.70659 -17.27429 -17.04548 -16.95045 -16.71577 -16.49264 -15.75320 -15.68569 -15.41740 -15.17959 -14.96225 -14.80038 -14.51117 -14.40244 -14.13983 -13.87838 -13.82008 -13.41779 -13.02526 -12.98201 -12.85960 -12.73471 -12.67634 -12.59988 -12.41405 -12.22448 -12.10700 -12.01830 -11.97879 -11.70148 -11.50905 -11.27378 -10.88501 -10.67111 -10.47701 -10.43803 -10.24993 -9.93161 -9.30819 -8.41247 -6.02429 1.30975 1.36110 1.45532 1.75139 1.96198 2.23538 2.23825 2.67567 2.95558 2.99378 3.15412 3.36191 3.56357 3.75328 3.80947 3.91078 3.99567 4.03078 4.12896 4.16168 4.22119 4.28608 4.33415 4.35182 4.46397 4.49545 4.50460 4.61048 4.63612 4.73589 4.77960 4.81522 4.85417 4.91242 4.98696 5.02134 5.06552 5.07356 5.27250 5.29519 5.40865 5.52467 5.61250 5.89480 6.03211 6.20462 6.36816 6.59852 6.61322 6.88347 7.38668 7.39948 7.97203 8.76594 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010840 B = 0.002564 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2582.321521 B =10918.339953 C =13052.124770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.017 4.017 3 Si 0.967 3.033 4 H -0.255 1.255 5 H -0.277 1.277 6 H -0.230 1.230 7 C -0.329 4.329 8 H 0.053 0.947 9 N -0.590 5.590 10 C 0.446 3.554 11 O -0.616 6.616 12 C 0.063 3.937 13 N -0.692 5.692 14 C 0.063 3.937 15 C 0.182 3.818 16 H 0.060 0.940 17 N -0.716 5.716 18 C 0.513 3.487 19 O -0.564 6.564 20 C -0.152 4.152 21 C 0.090 3.910 22 H 0.072 0.928 23 C -0.144 4.144 24 C -0.149 4.149 25 C 0.033 3.967 26 O -0.402 6.402 27 C -0.164 4.164 28 C -0.158 4.158 29 C -0.201 4.201 30 H 0.279 0.721 31 H 0.390 0.610 32 H 0.114 0.886 33 H 0.085 0.915 34 H 0.344 0.656 35 H 0.064 0.936 36 H 0.098 0.902 37 H 0.408 0.592 38 H 0.100 0.900 39 H 0.138 0.862 40 H 0.092 0.908 41 H 0.104 0.896 42 H 0.081 0.919 43 H 0.101 0.899 44 H 0.082 0.918 45 H 0.056 0.944 46 H 0.127 0.873 47 H 0.094 0.906 48 H 0.106 0.894 49 H 0.094 0.906 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.596 -12.126 -10.629 28.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.215 4.215 3 Si 0.787 3.213 4 H -0.179 1.179 5 H -0.202 1.202 6 H -0.154 1.154 7 C -0.459 4.459 8 H 0.071 0.929 9 N -0.232 5.232 10 C 0.234 3.766 11 O -0.501 6.501 12 C -0.069 4.069 13 N -0.325 5.325 14 C -0.066 4.066 15 C 0.077 3.923 16 H 0.078 0.922 17 N -0.369 5.369 18 C 0.301 3.699 19 O -0.443 6.443 20 C -0.191 4.191 21 C 0.032 3.968 22 H 0.090 0.910 23 C -0.181 4.181 24 C -0.186 4.186 25 C -0.043 4.043 26 O -0.322 6.322 27 C -0.183 4.183 28 C -0.195 4.195 29 C -0.238 4.238 30 H 0.089 0.911 31 H 0.226 0.774 32 H 0.132 0.868 33 H 0.103 0.897 34 H 0.163 0.837 35 H 0.082 0.918 36 H 0.116 0.884 37 H 0.244 0.756 38 H 0.119 0.881 39 H 0.155 0.845 40 H 0.110 0.890 41 H 0.122 0.878 42 H 0.100 0.900 43 H 0.120 0.880 44 H 0.101 0.899 45 H 0.075 0.925 46 H 0.145 0.855 47 H 0.112 0.888 48 H 0.125 0.875 49 H 0.112 0.888 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 23.214 -13.146 -9.035 28.166 hybrid contribution -0.554 1.196 -0.868 1.578 sum 22.660 -11.950 -9.904 27.466 Atomic orbital electron populations 1.69815 1.08230 1.29273 1.50318 1.26155 0.96486 1.02830 0.96023 0.85337 0.79475 0.76498 0.80025 1.17883 1.20208 1.15356 1.18999 0.81605 0.94857 1.50400 0.92909 1.42022 1.05742 1.07634 1.67788 1.21068 0.91177 0.83254 0.81084 1.90561 1.71479 1.32912 1.55113 1.21643 0.89295 0.91572 1.04392 1.59936 1.08275 1.12350 1.51981 1.22253 0.86152 0.94779 1.03403 1.20337 0.90451 0.91876 0.89624 0.92198 1.45963 1.63159 1.07292 1.20482 1.20990 0.77445 0.82447 0.89039 1.90648 1.50869 1.67585 1.35153 1.22228 1.03653 0.95645 0.97622 1.22580 0.93736 0.93260 0.87233 0.91033 1.23239 1.00701 0.97588 0.96573 1.23273 1.00167 0.98378 0.96795 1.23584 0.89942 0.93143 0.97637 1.88603 1.35909 1.71662 1.36007 1.22679 0.93791 0.98435 1.03409 1.22955 1.02720 1.03110 0.90757 1.23243 1.02218 0.95606 1.02712 0.91147 0.77380 0.86788 0.89702 0.83715 0.91801 0.88363 0.75553 0.88144 0.84450 0.88960 0.87799 0.90048 0.88007 0.89944 0.92528 0.85478 0.88771 0.87538 0.88764 0.89192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.55 13.96 21.67 0.30 -56.25 16 2 C -0.02 -0.91 5.50 84.93 0.47 -0.45 16 3 Si 0.97 38.29 27.74 68.60 1.90 40.20 16 4 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16 5 H -0.28 -10.98 7.11 99.48 0.71 -10.27 16 6 H -0.23 -7.62 6.52 99.48 0.65 -6.97 16 7 C -0.33 -19.32 10.16 84.04 0.85 -18.47 16 8 H 0.05 3.71 7.39 -2.92 -0.02 3.69 16 9 N -0.59 -27.51 5.09 -306.99 -1.56 -29.07 16 10 C 0.45 19.93 7.82 87.66 0.69 20.62 16 11 O -0.62 -34.47 15.78 -3.08 -0.05 -34.52 16 12 C 0.06 1.82 6.17 85.55 0.53 2.35 16 13 N -0.69 -19.63 6.12 -517.92 -3.17 -22.79 16 14 C 0.06 1.20 5.28 86.30 0.46 1.65 16 15 C 0.18 3.92 2.74 44.99 0.12 4.04 16 16 H 0.06 1.81 7.58 -2.39 -0.02 1.79 16 17 N -0.72 -14.30 2.89 -442.54 -1.28 -15.58 16 18 C 0.51 12.59 6.56 87.66 0.57 13.16 16 19 O -0.56 -18.87 12.52 8.72 0.11 -18.76 16 20 C -0.15 -2.67 5.27 29.85 0.16 -2.51 16 21 C 0.09 1.81 3.04 31.06 0.09 1.90 16 22 H 0.07 1.58 7.94 -2.38 -0.02 1.57 16 23 C -0.14 -1.75 6.56 31.91 0.21 -1.54 16 24 C -0.15 -1.97 7.16 32.10 0.23 -1.74 16 25 C 0.03 0.69 7.78 72.65 0.57 1.25 16 26 O -0.40 -11.42 10.37 -137.25 -1.42 -12.84 16 27 C -0.16 -2.84 5.71 -10.79 -0.06 -2.90 16 28 C -0.16 -2.37 9.73 30.60 0.30 -2.08 16 29 C -0.20 -4.08 9.82 30.59 0.30 -3.78 16 30 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 31 H 0.39 14.84 5.76 -92.70 -0.53 14.31 16 32 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 33 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.34 10.29 7.28 -89.69 -0.65 9.64 16 35 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.41 6.08 8.15 -92.71 -0.76 5.33 16 38 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.14 1.29 8.14 -2.38 -0.02 1.27 16 40 H 0.09 0.91 7.85 -2.38 -0.02 0.89 16 41 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.08 1.01 8.14 -2.39 -0.02 1.00 16 43 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 44 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 46 H 0.13 1.76 8.11 -2.39 -0.02 1.74 16 47 H 0.09 1.36 6.67 -2.39 -0.02 1.34 16 48 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 49 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 50 H 0.09 2.43 5.02 -2.38 -0.01 2.41 16 Total: -1.00 -87.44 400.39 -0.72 -88.16 By element: Atomic # 1 Polarization: 50.98 SS G_CDS: -1.03 Total: 49.95 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: 5.48 Total: 11.51 kcal Atomic # 7 Polarization: -117.99 SS G_CDS: -5.71 Total: -123.70 kcal Atomic # 8 Polarization: -64.76 SS G_CDS: -1.36 Total: -66.12 kcal Atomic # 14 Polarization: 38.29 SS G_CDS: 1.90 Total: 40.20 kcal Total: -87.44 -0.72 -88.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483547232.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.250 kcal (2) G-P(sol) polarization free energy of solvation -87.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds