Wall clock time and date at job start Sat Apr 11 2020 05:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86793 * 120.00499 * 2 1 4 4 H 1.48505 * 109.47405 * 270.00188 * 3 2 1 5 5 H 1.48505 * 109.47070 * 29.99946 * 3 2 1 6 6 H 1.48501 * 109.47431 * 150.00132 * 3 2 1 7 7 C 1.38956 * 119.99547 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99859 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00036 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00081 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99894 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00089 * 179.97438 * 10 9 7 13 13 N 1.46905 * 109.47090 * 180.02562 * 12 10 9 14 14 C 1.47484 * 110.99907 * 94.03063 * 13 12 10 15 15 C 1.53506 * 87.93128 * 138.70400 * 14 13 12 16 16 C 1.47475 * 110.99949 * 190.00071 * 13 12 10 17 17 H 1.09001 * 113.47847 * 336.12474 * 16 13 12 18 18 C 1.53004 * 113.47368 * 106.53050 * 16 13 12 19 19 N 1.46499 * 109.47198 * 305.00019 * 18 16 13 20 20 C 1.34777 * 119.99665 * 180.27868 * 19 18 16 21 21 O 1.21283 * 119.99990 * 359.71991 * 20 19 18 22 22 C 1.50698 * 119.99538 * 179.72653 * 20 19 18 23 23 C 1.52999 * 109.47004 * 179.97438 * 22 20 19 24 24 C 1.52998 * 109.47303 * 179.97438 * 23 22 20 25 25 H 1.08999 * 109.86855 * 54.30440 * 24 23 22 26 26 C 1.54102 * 109.87955 * 175.30684 * 24 23 22 27 27 C 1.54809 * 104.18754 * 121.45697 * 26 24 23 28 28 C 1.54990 * 102.09403 * 20.88068 * 27 26 24 29 29 O 1.43740 * 109.88163 * 293.29511 * 24 23 22 30 30 H 0.97003 * 119.99267 * 359.97438 * 1 2 3 31 31 H 0.97003 * 119.99966 * 0.02562 * 9 7 2 32 32 H 1.09000 * 109.47213 * 60.00656 * 12 10 9 33 33 H 1.09001 * 109.47559 * 300.00361 * 12 10 9 34 34 H 1.09001 * 113.47466 * 253.47109 * 14 13 12 35 35 H 1.09003 * 113.47537 * 23.87916 * 14 13 12 36 36 H 1.09001 * 114.17399 * 220.33292 * 15 14 13 37 37 H 1.09001 * 114.17203 * 87.61934 * 15 14 13 38 38 H 1.09009 * 109.46730 * 184.99806 * 18 16 13 39 39 H 1.08998 * 109.46846 * 65.00350 * 18 16 13 40 40 H 0.97001 * 119.99790 * 359.97438 * 19 18 16 41 41 H 1.09003 * 109.47112 * 299.99065 * 22 20 19 42 42 H 1.08993 * 109.47916 * 59.99687 * 22 20 19 43 43 H 1.09000 * 109.47527 * 299.99994 * 23 22 20 44 44 H 1.09007 * 109.47302 * 59.99534 * 23 22 20 45 45 H 1.09009 * 110.48650 * 240.13381 * 26 24 23 46 46 H 1.09003 * 110.48798 * 2.77873 * 26 24 23 47 47 H 1.09005 * 110.90706 * 139.08090 * 27 26 24 48 48 H 1.08992 * 110.90608 * 262.68024 * 27 26 24 49 49 H 1.09002 * 110.61907 * 81.47689 * 28 27 26 50 50 H 1.08997 * 110.61831 * 204.47234 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4457 2.6526 0.7000 6 1 3.5458 1.4400 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0001 9 7 1.3232 -2.3907 -0.0005 10 6 1.9970 -3.5579 -0.0016 11 8 3.2100 -3.5580 -0.0021 12 6 1.2434 -4.8630 -0.0010 13 7 2.1980 -5.9796 -0.0017 14 6 2.4689 -6.4442 1.3715 15 6 2.4119 -7.8820 0.8368 16 6 1.5106 -7.2623 -0.2403 17 1 0.4552 -7.2466 0.0317 18 6 1.7524 -7.8324 -1.6394 19 7 1.3799 -6.8340 -2.6447 20 6 1.5039 -7.1194 -3.9560 21 8 1.9287 -8.2009 -4.3038 22 6 1.1148 -6.0946 -4.9902 23 6 1.3519 -6.6665 -6.3893 24 6 0.9564 -5.6263 -7.4393 25 1 1.4831 -4.6908 -7.2507 26 6 1.3008 -6.1468 -8.8482 27 6 -0.0548 -6.1438 -9.5958 28 6 -0.8872 -5.1429 -8.7546 29 8 -0.4633 -5.4050 -7.3974 30 1 -0.4849 0.8401 0.0004 31 1 0.3532 -2.3906 -0.0005 32 1 0.6158 -4.9205 -0.8903 33 1 0.6177 -4.9209 0.8897 34 1 3.4534 -6.1569 1.7408 35 1 1.6699 -6.2095 2.0749 36 1 1.9013 -8.5837 1.4964 37 1 3.3640 -8.2564 0.4607 38 1 1.1475 -8.7289 -1.7760 39 1 2.8068 -8.0850 -1.7515 40 1 1.0398 -5.9692 -2.3665 41 1 0.0605 -5.8433 -4.8740 42 1 1.7189 -5.1971 -4.8577 43 1 2.4063 -6.9176 -6.5053 44 1 0.7480 -7.5642 -6.5221 45 1 2.0088 -5.4789 -9.3391 46 1 1.7040 -7.1580 -8.7934 47 1 0.0657 -5.7864 -10.6185 48 1 -0.5085 -7.1347 -9.5825 49 1 -0.6525 -4.1164 -9.0364 50 1 -1.9533 -5.3391 -8.8689 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483628151.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:37 Heat of formation + Delta-G solvation = -91.130395 kcal Electronic energy + Delta-G solvation = -29595.577005 eV Core-core repulsion = 25430.548604 eV Total energy + Delta-G solvation = -4165.028402 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.51412 -39.80353 -39.08749 -37.76886 -34.48967 -33.91268 -33.62389 -32.28917 -31.40115 -30.71066 -29.35195 -27.81315 -25.84927 -24.48472 -23.77703 -22.89360 -22.00995 -21.04289 -20.31834 -19.60537 -19.30175 -17.92583 -17.16967 -16.61167 -16.28000 -16.15477 -15.93227 -15.71631 -15.53228 -15.11796 -14.96477 -14.54494 -14.12137 -13.90811 -13.86344 -13.70208 -13.57543 -13.11100 -12.98586 -12.61871 -12.45326 -12.10830 -11.95983 -11.88882 -11.62271 -11.55317 -11.53591 -11.33414 -11.13932 -11.08361 -11.04157 -10.89008 -10.83672 -10.53413 -10.40689 -10.22808 -9.85369 -9.70105 -9.51534 -8.95489 -8.83228 -8.23341 -7.97829 -6.43265 -3.83957 2.77306 3.16465 3.22014 3.25470 3.31293 3.66680 3.85963 3.93194 4.20903 4.30917 4.40537 4.48950 4.66559 4.73013 4.77012 4.85146 4.97748 4.98948 5.00534 5.11471 5.16080 5.25241 5.30144 5.36919 5.40332 5.43385 5.44681 5.51751 5.52050 5.60372 5.64517 5.67927 5.69129 5.78437 5.82535 5.89355 5.95026 5.98430 6.15048 6.16025 6.23507 6.42087 6.60236 6.72356 7.14708 7.53820 7.59682 8.04260 8.32806 8.60227 9.17065 9.52477 10.04844 10.74490 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.007061 B = 0.003075 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3964.668119 B = 9104.361401 C =12455.751728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.929 3.071 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.298 4.298 8 H 0.102 0.898 9 N -0.566 5.566 10 C 0.445 3.555 11 O -0.572 6.572 12 C 0.007 3.993 13 N -0.433 5.433 14 C 0.004 3.996 15 C -0.133 4.133 16 C 0.003 3.997 17 H 0.082 0.918 18 C 0.141 3.859 19 N -0.722 5.722 20 C 0.515 3.485 21 O -0.552 6.552 22 C -0.142 4.142 23 C -0.098 4.098 24 C 0.073 3.927 25 H 0.071 0.929 26 C -0.152 4.152 27 C -0.156 4.156 28 C 0.045 3.955 29 O -0.372 6.372 30 H 0.271 0.729 31 H 0.391 0.609 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.090 0.910 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.402 0.598 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.080 0.920 47 H 0.078 0.922 48 H 0.076 0.924 49 H 0.060 0.940 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.745 -14.397 -11.175 18.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.756 3.244 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.428 4.428 8 H 0.120 0.880 9 N -0.203 5.203 10 C 0.230 3.770 11 O -0.455 6.455 12 C -0.125 4.125 13 N -0.155 5.155 14 C -0.124 4.124 15 C -0.171 4.171 16 C -0.107 4.107 17 H 0.100 0.900 18 C 0.017 3.983 19 N -0.374 5.374 20 C 0.302 3.698 21 O -0.431 6.431 22 C -0.182 4.182 23 C -0.135 4.135 24 C 0.015 3.985 25 H 0.089 0.911 26 C -0.190 4.190 27 C -0.193 4.193 28 C -0.032 4.032 29 O -0.291 6.291 30 H 0.081 0.919 31 H 0.224 0.776 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.108 0.892 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.114 0.886 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.238 0.762 41 H 0.117 0.883 42 H 0.114 0.886 43 H 0.100 0.900 44 H 0.094 0.906 45 H 0.094 0.906 46 H 0.099 0.901 47 H 0.096 0.904 48 H 0.095 0.905 49 H 0.078 0.922 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.338 -14.747 -11.662 18.945 hybrid contribution -1.116 1.362 0.504 1.832 sum -3.454 -13.384 -11.158 17.764 Atomic orbital electron populations 1.69609 1.05912 1.28134 1.50699 1.25244 0.95626 0.99667 0.97364 0.85874 0.79241 0.80861 0.78421 1.20383 1.20942 1.19443 1.19682 0.93326 0.82194 1.47564 0.87985 1.41874 1.09102 1.04580 1.64787 1.19609 0.88394 0.84272 0.84724 1.90540 1.13578 1.86865 1.54531 1.22577 0.94778 0.93591 1.01602 1.68862 1.29949 0.99358 1.17330 1.23756 1.03208 0.93838 0.91645 1.23155 1.00341 0.96629 0.97020 1.23785 0.98287 0.93255 0.95346 0.90008 1.21284 1.01158 0.90744 0.85123 1.45986 1.66724 1.19014 1.05693 1.20716 0.77310 0.88492 0.83274 1.90660 1.46291 1.25024 1.81112 1.21660 1.04323 0.98475 0.93719 1.21507 1.02536 0.97831 0.91675 1.22842 0.82557 0.98207 0.94856 0.91081 1.23004 0.97947 1.02828 0.95230 1.23123 0.95811 1.00737 0.99650 1.23571 0.99592 0.98030 0.81980 1.88949 1.21858 1.91703 1.26618 0.91890 0.77593 0.90150 0.92033 0.89196 0.91391 0.90458 0.88564 0.91444 0.90890 0.76237 0.88260 0.88621 0.90016 0.90556 0.90583 0.90115 0.90355 0.90534 0.92159 0.89105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.21 13.05 55.50 0.72 -23.48 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.91 29.55 -169.99 -5.02 15.89 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.30 -8.21 9.68 -14.93 -0.14 -8.36 16 8 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 9 N -0.57 -14.03 5.29 -10.96 -0.06 -14.09 16 10 C 0.45 10.28 7.85 -10.99 -0.09 10.20 16 11 O -0.57 -15.53 16.01 5.54 0.09 -15.44 16 12 C 0.01 0.11 5.05 -4.98 -0.03 0.09 16 13 N -0.43 -6.77 5.39 -237.95 -1.28 -8.05 16 14 C 0.00 0.06 7.71 -7.55 -0.06 0.00 16 15 C -0.13 -1.40 8.00 -26.20 -0.21 -1.60 16 16 C 0.00 0.04 3.23 -71.44 -0.23 -0.19 16 17 H 0.08 0.85 7.91 -51.93 -0.41 0.44 16 18 C 0.14 1.78 5.81 -4.04 -0.02 1.76 16 19 N -0.72 -9.78 5.46 -60.29 -0.33 -10.11 16 20 C 0.52 7.41 7.83 -10.99 -0.09 7.33 16 21 O -0.55 -9.46 15.98 5.55 0.09 -9.37 16 22 C -0.14 -1.71 5.61 -27.88 -0.16 -1.87 16 23 C -0.10 -1.10 3.99 -26.73 -0.11 -1.20 16 24 C 0.07 0.74 3.40 -26.16 -0.09 0.65 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 26 C -0.15 -1.22 6.64 -25.20 -0.17 -1.39 16 27 C -0.16 -1.12 7.16 -24.73 -0.18 -1.29 16 28 C 0.04 0.38 7.72 38.21 0.29 0.68 16 29 O -0.37 -4.31 10.84 -35.23 -0.38 -4.70 16 30 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 31 H 0.39 9.22 7.90 -40.82 -0.32 8.90 16 32 H 0.08 1.18 6.27 -51.93 -0.33 0.85 16 33 H 0.06 0.92 7.30 -51.93 -0.38 0.54 16 34 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.07 0.84 7.42 -51.93 -0.39 0.45 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.10 1.01 7.94 -51.93 -0.41 0.60 16 38 H 0.07 0.79 8.14 -51.92 -0.42 0.36 16 39 H 0.07 1.02 7.87 -51.93 -0.41 0.61 16 40 H 0.40 5.34 6.22 -40.82 -0.25 5.08 16 41 H 0.10 1.15 7.89 -51.93 -0.41 0.74 16 42 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 44 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 45 H 0.08 0.53 8.14 -51.92 -0.42 0.11 16 46 H 0.08 0.63 7.70 -51.93 -0.40 0.23 16 47 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 405.58 15.07 6.11 6.11 Total: -1.00 -33.93 405.58 -9.71 -43.64 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: -8.29 Total: 14.31 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: -1.36 Total: 5.29 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: -0.95 Total: -55.73 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: -0.20 Total: -29.51 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.93 -9.71 -43.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483628151.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.488 kcal (2) G-P(sol) polarization free energy of solvation -33.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds