Wall clock time and date at job start Sat Apr 11 2020 05:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86793 * 120.00499 * 2 1 4 4 H 1.48505 * 109.47405 * 270.00188 * 3 2 1 5 5 H 1.48505 * 109.47070 * 29.99946 * 3 2 1 6 6 H 1.48501 * 109.47431 * 150.00132 * 3 2 1 7 7 C 1.38956 * 119.99547 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99859 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00036 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00081 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99894 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00089 * 179.97438 * 10 9 7 13 13 N 1.46905 * 109.47090 * 180.02562 * 12 10 9 14 14 C 1.47484 * 110.99907 * 94.03063 * 13 12 10 15 15 C 1.53506 * 87.93128 * 138.70400 * 14 13 12 16 16 C 1.47475 * 110.99949 * 190.00071 * 13 12 10 17 17 H 1.09001 * 113.47847 * 336.12474 * 16 13 12 18 18 C 1.53004 * 113.47368 * 106.53050 * 16 13 12 19 19 N 1.46499 * 109.47198 * 305.00019 * 18 16 13 20 20 C 1.34777 * 119.99665 * 180.27868 * 19 18 16 21 21 O 1.21283 * 119.99990 * 359.71991 * 20 19 18 22 22 C 1.50698 * 119.99538 * 179.72653 * 20 19 18 23 23 C 1.52999 * 109.47004 * 179.97438 * 22 20 19 24 24 C 1.52998 * 109.47303 * 179.97438 * 23 22 20 25 25 H 1.08999 * 109.86855 * 54.30440 * 24 23 22 26 26 C 1.54102 * 109.87955 * 175.30684 * 24 23 22 27 27 C 1.54809 * 104.18754 * 121.45697 * 26 24 23 28 28 C 1.54990 * 102.09403 * 20.88068 * 27 26 24 29 29 O 1.43740 * 109.88163 * 293.29511 * 24 23 22 30 30 H 0.97003 * 119.99267 * 359.97438 * 1 2 3 31 31 H 0.97003 * 119.99966 * 0.02562 * 9 7 2 32 32 H 1.09000 * 109.47213 * 60.00656 * 12 10 9 33 33 H 1.09001 * 109.47559 * 300.00361 * 12 10 9 34 34 H 1.09001 * 113.47466 * 253.47109 * 14 13 12 35 35 H 1.09003 * 113.47537 * 23.87916 * 14 13 12 36 36 H 1.09001 * 114.17399 * 220.33292 * 15 14 13 37 37 H 1.09001 * 114.17203 * 87.61934 * 15 14 13 38 38 H 1.09009 * 109.46730 * 184.99806 * 18 16 13 39 39 H 1.08998 * 109.46846 * 65.00350 * 18 16 13 40 40 H 0.97001 * 119.99790 * 359.97438 * 19 18 16 41 41 H 1.09003 * 109.47112 * 299.99065 * 22 20 19 42 42 H 1.08993 * 109.47916 * 59.99687 * 22 20 19 43 43 H 1.09000 * 109.47527 * 299.99994 * 23 22 20 44 44 H 1.09007 * 109.47302 * 59.99534 * 23 22 20 45 45 H 1.09009 * 110.48650 * 240.13381 * 26 24 23 46 46 H 1.09003 * 110.48798 * 2.77873 * 26 24 23 47 47 H 1.09005 * 110.90706 * 139.08090 * 27 26 24 48 48 H 1.08992 * 110.90608 * 262.68024 * 27 26 24 49 49 H 1.09002 * 110.61907 * 81.47689 * 28 27 26 50 50 H 1.08997 * 110.61831 * 204.47234 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4457 2.6526 0.7000 6 1 3.5458 1.4400 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0001 9 7 1.3232 -2.3907 -0.0005 10 6 1.9970 -3.5579 -0.0016 11 8 3.2100 -3.5580 -0.0021 12 6 1.2434 -4.8630 -0.0010 13 7 2.1980 -5.9796 -0.0017 14 6 2.4689 -6.4442 1.3715 15 6 2.4119 -7.8820 0.8368 16 6 1.5106 -7.2623 -0.2403 17 1 0.4552 -7.2466 0.0317 18 6 1.7524 -7.8324 -1.6394 19 7 1.3799 -6.8340 -2.6447 20 6 1.5039 -7.1194 -3.9560 21 8 1.9287 -8.2009 -4.3038 22 6 1.1148 -6.0946 -4.9902 23 6 1.3519 -6.6665 -6.3893 24 6 0.9564 -5.6263 -7.4393 25 1 1.4831 -4.6908 -7.2507 26 6 1.3008 -6.1468 -8.8482 27 6 -0.0548 -6.1438 -9.5958 28 6 -0.8872 -5.1429 -8.7546 29 8 -0.4633 -5.4050 -7.3974 30 1 -0.4849 0.8401 0.0004 31 1 0.3532 -2.3906 -0.0005 32 1 0.6158 -4.9205 -0.8903 33 1 0.6177 -4.9209 0.8897 34 1 3.4534 -6.1569 1.7408 35 1 1.6699 -6.2095 2.0749 36 1 1.9013 -8.5837 1.4964 37 1 3.3640 -8.2564 0.4607 38 1 1.1475 -8.7289 -1.7760 39 1 2.8068 -8.0850 -1.7515 40 1 1.0398 -5.9692 -2.3665 41 1 0.0605 -5.8433 -4.8740 42 1 1.7189 -5.1971 -4.8577 43 1 2.4063 -6.9176 -6.5053 44 1 0.7480 -7.5642 -6.5221 45 1 2.0088 -5.4789 -9.3391 46 1 1.7040 -7.1580 -8.7934 47 1 0.0657 -5.7864 -10.6185 48 1 -0.5085 -7.1347 -9.5825 49 1 -0.6525 -4.1164 -9.0364 50 1 -1.9533 -5.3391 -8.8689 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483628151.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:37 Heat of formation + Delta-G solvation = -117.488408 kcal Electronic energy + Delta-G solvation = -29596.719974 eV Core-core repulsion = 25430.548604 eV Total energy + Delta-G solvation = -4166.171371 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.63382 -40.72973 -40.10548 -39.55497 -35.94903 -35.57260 -34.56565 -33.31627 -32.97728 -32.07378 -30.28600 -28.72865 -27.53882 -25.37592 -25.34355 -23.83200 -22.73760 -21.81736 -21.42183 -21.07579 -20.59103 -19.90808 -18.21803 -17.74728 -17.39510 -17.31554 -16.90190 -16.82197 -16.56852 -16.46351 -16.23087 -16.05187 -15.59010 -15.35375 -15.00955 -14.67250 -14.50110 -14.37739 -14.08900 -13.78367 -13.76080 -13.52986 -13.04607 -12.93407 -12.91628 -12.62153 -12.60208 -12.43434 -12.34831 -12.29252 -12.14378 -11.96692 -11.91416 -11.83532 -11.62189 -11.52430 -11.48607 -10.85221 -10.62253 -10.37514 -10.06244 -9.99781 -9.71291 -8.46080 -5.94214 1.37415 1.41477 1.53547 1.62903 2.05795 2.17415 2.29349 2.81160 2.95801 3.19905 3.35184 3.54958 3.62176 3.68703 3.81040 3.85893 4.01934 4.04544 4.10634 4.13077 4.15705 4.26864 4.33623 4.37370 4.41001 4.44451 4.51871 4.60165 4.65316 4.74367 4.79180 4.83028 4.83857 4.89356 4.95231 5.00102 5.05138 5.09875 5.18450 5.21762 5.26714 5.32900 5.41739 5.52525 5.93196 5.99511 6.11596 6.48797 6.62004 7.14614 7.20531 7.57987 8.14923 8.71152 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.007061 B = 0.003075 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3964.668119 B = 9104.361401 C =12455.751728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.011 4.011 3 Si 0.989 3.011 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.275 1.275 7 C -0.331 4.331 8 H 0.075 0.925 9 N -0.574 5.574 10 C 0.443 3.557 11 O -0.618 6.618 12 C 0.021 3.979 13 N -0.469 5.469 14 C -0.004 4.004 15 C -0.113 4.113 16 C 0.015 3.985 17 H 0.108 0.892 18 C 0.140 3.860 19 N -0.720 5.720 20 C 0.511 3.489 21 O -0.583 6.583 22 C -0.137 4.137 23 C -0.092 4.092 24 C 0.071 3.929 25 H 0.070 0.930 26 C -0.152 4.152 27 C -0.150 4.150 28 C 0.036 3.964 29 O -0.398 6.398 30 H 0.277 0.723 31 H 0.396 0.604 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.064 0.936 35 H 0.084 0.916 36 H 0.112 0.888 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.055 0.945 40 H 0.404 0.596 41 H 0.105 0.895 42 H 0.097 0.903 43 H 0.078 0.922 44 H 0.066 0.934 45 H 0.088 0.912 46 H 0.081 0.919 47 H 0.098 0.902 48 H 0.076 0.924 49 H 0.066 0.934 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.034 -14.866 -11.499 19.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.210 4.210 3 Si 0.813 3.187 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.200 1.200 7 C -0.461 4.461 8 H 0.093 0.907 9 N -0.212 5.212 10 C 0.230 3.770 11 O -0.504 6.504 12 C -0.111 4.111 13 N -0.192 5.192 14 C -0.133 4.133 15 C -0.151 4.151 16 C -0.095 4.095 17 H 0.126 0.874 18 C 0.016 3.984 19 N -0.371 5.371 20 C 0.299 3.701 21 O -0.464 6.464 22 C -0.177 4.177 23 C -0.130 4.130 24 C 0.014 3.986 25 H 0.087 0.913 26 C -0.189 4.189 27 C -0.187 4.187 28 C -0.040 4.040 29 O -0.318 6.318 30 H 0.087 0.913 31 H 0.230 0.770 32 H 0.121 0.879 33 H 0.104 0.896 34 H 0.083 0.917 35 H 0.102 0.898 36 H 0.130 0.870 37 H 0.110 0.890 38 H 0.100 0.900 39 H 0.074 0.926 40 H 0.239 0.761 41 H 0.123 0.877 42 H 0.115 0.885 43 H 0.097 0.903 44 H 0.084 0.916 45 H 0.107 0.893 46 H 0.100 0.900 47 H 0.116 0.884 48 H 0.095 0.905 49 H 0.084 0.916 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.660 -15.220 -11.976 19.710 hybrid contribution -0.697 1.475 0.622 1.746 sum -4.357 -13.746 -11.353 18.353 Atomic orbital electron populations 1.69661 1.06685 1.29207 1.50414 1.25962 0.96510 1.02176 0.96391 0.84992 0.77899 0.77208 0.78645 1.19667 1.19505 1.19988 1.19598 0.92534 0.84096 1.49874 0.90678 1.41933 1.09247 1.04629 1.65416 1.20748 0.88217 0.85838 0.82205 1.90507 1.15990 1.87879 1.56016 1.22451 0.94444 0.90426 1.03802 1.68816 1.30942 1.00462 1.19011 1.23851 1.02442 0.95895 0.91071 1.23098 1.00254 0.95411 0.96375 1.23844 0.99693 0.90934 0.95004 0.87392 1.21364 1.00418 0.91151 0.85492 1.46042 1.66124 1.19224 1.05725 1.21085 0.76733 0.88405 0.83847 1.90640 1.47810 1.26340 1.81584 1.21665 1.04568 0.97837 0.93629 1.21445 1.02117 0.97790 0.91629 1.22861 0.82246 0.97777 0.95752 0.91253 1.23019 0.98804 1.03068 0.94052 1.23119 0.94811 1.00484 1.00333 1.23787 1.00467 0.98805 0.80926 1.88911 1.22426 1.91885 1.28606 0.91335 0.76999 0.87901 0.89565 0.91703 0.89839 0.87006 0.88978 0.90032 0.92621 0.76055 0.87673 0.88478 0.90349 0.91566 0.89341 0.90024 0.88362 0.90525 0.91552 0.88106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.83 13.05 21.66 0.28 -48.54 16 2 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 3 Si 0.99 42.75 29.55 68.60 2.03 44.78 16 4 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 5 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 7 C -0.33 -18.68 9.68 84.04 0.81 -17.86 16 8 H 0.08 4.56 7.16 -2.91 -0.02 4.54 16 9 N -0.57 -28.85 5.29 -306.98 -1.62 -30.47 16 10 C 0.44 20.66 7.85 87.66 0.69 21.34 16 11 O -0.62 -34.58 16.01 -3.08 -0.05 -34.63 16 12 C 0.02 0.66 5.05 85.55 0.43 1.09 16 13 N -0.47 -14.11 5.39 -906.74 -4.89 -19.00 16 14 C 0.00 -0.10 7.71 83.57 0.64 0.55 16 15 C -0.11 -2.07 8.00 30.94 0.25 -1.83 16 16 C 0.01 0.31 3.23 42.19 0.14 0.44 16 17 H 0.11 1.77 7.91 -2.39 -0.02 1.75 16 18 C 0.14 3.31 5.81 86.38 0.50 3.82 16 19 N -0.72 -18.86 5.46 -463.05 -2.53 -21.39 16 20 C 0.51 14.64 7.83 87.66 0.69 15.33 16 21 O -0.58 -20.04 15.98 -3.04 -0.05 -20.09 16 22 C -0.14 -3.32 5.61 29.85 0.17 -3.15 16 23 C -0.09 -2.07 3.99 30.59 0.12 -1.95 16 24 C 0.07 1.42 3.40 30.97 0.11 1.53 16 25 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 26 C -0.15 -2.26 6.64 31.58 0.21 -2.05 16 27 C -0.15 -1.91 7.16 31.89 0.23 -1.68 16 28 C 0.04 0.57 7.72 72.66 0.56 1.13 16 29 O -0.40 -9.04 10.84 -148.98 -1.61 -10.65 16 30 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 31 H 0.40 18.72 7.90 -92.71 -0.73 17.99 16 32 H 0.10 2.81 6.27 -2.39 -0.01 2.79 16 33 H 0.09 2.35 7.30 -2.39 -0.02 2.33 16 34 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.08 1.86 7.42 -2.39 -0.02 1.84 16 36 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.09 1.79 7.94 -2.39 -0.02 1.77 16 38 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 39 H 0.06 1.52 7.87 -2.39 -0.02 1.50 16 40 H 0.40 10.26 6.22 -92.71 -0.58 9.68 16 41 H 0.11 2.41 7.89 -2.39 -0.02 2.39 16 42 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 43 H 0.08 1.79 8.10 -2.39 -0.02 1.77 16 44 H 0.07 1.62 8.10 -2.38 -0.02 1.60 16 45 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 46 H 0.08 1.20 7.70 -2.39 -0.02 1.18 16 47 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 48 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 49 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 50 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -75.02 405.58 -2.78 -77.80 By element: Atomic # 1 Polarization: 45.94 SS G_CDS: -0.36 Total: 45.58 kcal Atomic # 6 Polarization: 10.60 SS G_CDS: 6.01 Total: 16.61 kcal Atomic # 7 Polarization: -110.64 SS G_CDS: -8.75 Total: -119.40 kcal Atomic # 8 Polarization: -63.66 SS G_CDS: -1.71 Total: -65.37 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -75.02 -2.78 -77.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483628151.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.689 kcal (2) G-P(sol) polarization free energy of solvation -75.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds