Wall clock time and date at job start Sat Apr 11 2020 05:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86798 * 120.00035 * 2 1 4 4 H 1.48506 * 109.47297 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00103 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00096 * 3 2 1 7 7 C 1.38946 * 119.99846 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99937 * 179.97438 * 7 2 1 9 9 N 1.37099 * 120.00239 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99952 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00443 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99823 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47332 * 180.02562 * 12 10 9 14 14 C 1.47480 * 110.99733 * 74.02547 * 13 12 10 15 15 C 1.53511 * 87.93076 * 138.70386 * 14 13 12 16 16 C 1.47477 * 111.00193 * 169.99721 * 13 12 10 17 17 H 1.09004 * 113.47618 * 336.06684 * 16 13 12 18 18 C 1.53004 * 113.47278 * 106.52665 * 16 13 12 19 19 N 1.46497 * 109.47256 * 305.00309 * 18 16 13 20 20 C 1.34781 * 119.99562 * 180.02562 * 19 18 16 21 21 O 1.21276 * 120.00178 * 359.97438 * 20 19 18 22 22 C 1.50700 * 119.99723 * 180.02562 * 20 19 18 23 23 C 1.53006 * 109.46897 * 179.97438 * 22 20 19 24 24 C 1.52993 * 109.46870 * 179.97438 * 23 22 20 25 25 H 1.09000 * 110.33812 * 307.24847 * 24 23 22 26 26 C 1.54484 * 110.37486 * 185.00041 * 24 23 22 27 27 C 1.54501 * 104.06586 * 217.19531 * 26 24 23 28 28 C 1.54476 * 104.06454 * 359.97438 * 27 26 24 29 29 O 1.44420 * 110.37485 * 69.62213 * 24 23 22 30 30 H 0.96993 * 120.00098 * 179.97438 * 1 2 3 31 31 H 0.96996 * 119.99546 * 0.02562 * 9 7 2 32 32 H 1.09005 * 109.46894 * 300.00473 * 12 10 9 33 33 H 1.09003 * 109.47186 * 59.99745 * 12 10 9 34 34 H 1.08996 * 113.47540 * 253.47220 * 14 13 12 35 35 H 1.09002 * 113.47528 * 23.93935 * 14 13 12 36 36 H 1.08999 * 114.17203 * 220.33013 * 15 14 13 37 37 H 1.09003 * 114.34381 * 87.63217 * 15 14 13 38 38 H 1.08996 * 109.46441 * 65.00635 * 18 16 13 39 39 H 1.09002 * 109.46784 * 185.00084 * 18 16 13 40 40 H 0.96996 * 120.00109 * 0.02562 * 19 18 16 41 41 H 1.08999 * 109.46708 * 299.99575 * 22 20 19 42 42 H 1.08993 * 109.47244 * 59.99974 * 22 20 19 43 43 H 1.08999 * 109.47276 * 299.99961 * 23 22 20 44 44 H 1.09002 * 109.46968 * 59.99786 * 23 22 20 45 45 H 1.09002 * 110.50812 * 335.83663 * 26 24 23 46 46 H 1.08999 * 110.51030 * 98.54313 * 26 24 23 47 47 H 1.08991 * 110.51560 * 118.64281 * 27 26 24 48 48 H 1.09008 * 110.50662 * 241.35361 * 27 26 24 49 49 H 1.09001 * 110.37662 * 142.81182 * 28 27 26 50 50 H 1.09006 * 110.37545 * 265.15384 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3464 0.0006 5 1 1.8894 2.3964 1.2125 6 1 1.8894 2.3965 -1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0016 11 8 3.2101 -3.5579 -0.0021 12 6 1.2437 -4.8629 -0.0022 13 7 2.1983 -5.9796 -0.0027 14 6 2.8297 -6.1356 1.3210 15 6 2.6789 -7.6539 1.1521 16 6 1.5111 -7.2625 0.2359 17 1 0.5628 -7.1557 0.7627 18 6 1.3988 -8.1356 -1.0155 19 7 0.7487 -7.3746 -2.0853 20 6 0.5415 -7.9456 -3.2884 21 8 0.8936 -9.0893 -3.4855 22 6 -0.1267 -7.1626 -4.3890 23 6 -0.2390 -8.0359 -5.6403 24 6 -0.9180 -7.2411 -6.7575 25 1 -1.8612 -6.8231 -6.4058 26 6 -1.1554 -8.1414 -7.9903 27 6 -0.8982 -7.2065 -9.1931 28 6 -0.5365 -5.8518 -8.5450 29 8 -0.0455 -6.1916 -7.2297 30 1 -0.4850 -0.8400 -0.0004 31 1 0.3534 -2.3906 -0.0005 32 1 0.6173 -4.9212 0.8880 33 1 0.6167 -4.9201 -0.8919 34 1 3.8672 -5.8027 1.3491 35 1 2.2333 -5.7282 2.1373 36 1 2.3780 -8.1763 2.0602 37 1 3.5103 -8.1333 0.6352 38 1 2.3951 -8.4377 -1.3382 39 1 0.8062 -9.0218 -0.7882 40 1 0.4675 -6.4597 -1.9277 41 1 -1.1227 -6.8597 -4.0662 42 1 0.4665 -6.2770 -4.6166 43 1 0.7572 -8.3384 -5.9629 44 1 -0.8320 -8.9218 -5.4131 45 1 -0.4518 -8.9739 -7.9963 46 1 -2.1819 -8.5076 -8.0037 47 1 -0.0676 -7.5767 -9.7939 48 1 -1.7977 -7.1105 -9.8013 49 1 0.2407 -5.3505 -9.1219 50 1 -1.4210 -5.2194 -8.4686 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483628154.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:40 Heat of formation + Delta-G solvation = -91.278497 kcal Electronic energy + Delta-G solvation = -29479.745900 eV Core-core repulsion = 25314.711077 eV Total energy + Delta-G solvation = -4165.034824 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.59337 -39.85532 -39.19220 -37.93025 -34.61962 -34.27750 -33.74113 -32.31932 -31.40786 -30.64837 -29.41704 -27.86763 -25.69336 -24.62027 -23.71090 -22.93866 -21.90632 -21.16220 -20.40606 -19.78799 -19.59994 -17.95824 -17.29336 -16.72861 -16.51690 -16.24373 -16.02267 -15.92651 -15.67401 -15.25165 -14.93963 -14.47323 -14.20118 -14.01631 -14.00271 -13.73805 -13.61217 -13.31338 -13.06843 -12.79989 -12.47639 -12.10390 -11.98113 -11.90669 -11.70274 -11.66025 -11.50455 -11.23928 -11.20936 -11.05720 -10.99938 -10.92447 -10.88635 -10.57736 -10.24603 -9.99654 -9.90514 -9.80401 -9.57476 -9.05089 -8.85485 -8.36465 -8.06438 -6.78487 -3.91856 2.66044 3.12178 3.28950 3.33019 3.52177 3.63878 3.77253 3.90547 4.23470 4.29202 4.36782 4.42093 4.61891 4.68727 4.69267 4.73543 4.81717 4.90186 4.94447 5.04190 5.15018 5.18448 5.26224 5.31007 5.33587 5.34533 5.38585 5.42104 5.50838 5.52122 5.55743 5.63300 5.65559 5.72960 5.74800 5.82762 5.88145 5.92162 6.02594 6.04801 6.15834 6.36943 6.51448 6.62362 7.07985 7.48610 7.77469 8.05119 8.21957 8.56038 8.76436 9.43578 9.83488 10.64981 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.007648 B = 0.002799 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3660.232266 B =10002.954827 C =13181.663121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C -0.009 4.009 3 Si 1.095 2.905 4 H -0.283 1.283 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.381 4.381 8 H 0.100 0.900 9 N -0.576 5.576 10 C 0.446 3.554 11 O -0.569 6.569 12 C 0.008 3.992 13 N -0.436 5.436 14 C 0.013 3.987 15 C -0.135 4.135 16 C 0.003 3.997 17 H 0.082 0.918 18 C 0.141 3.859 19 N -0.723 5.723 20 C 0.514 3.486 21 O -0.550 6.550 22 C -0.142 4.142 23 C -0.095 4.095 24 C 0.072 3.928 25 H 0.070 0.930 26 C -0.151 4.151 27 C -0.156 4.156 28 C 0.043 3.957 29 O -0.368 6.368 30 H 0.261 0.739 31 H 0.375 0.625 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.401 0.599 41 H 0.091 0.909 42 H 0.102 0.898 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.078 0.922 46 H 0.076 0.924 47 H 0.074 0.926 48 H 0.075 0.925 49 H 0.091 0.909 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.534 -16.942 -9.370 20.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.212 4.212 3 Si 0.921 3.079 4 H -0.209 1.209 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.510 4.510 8 H 0.118 0.882 9 N -0.214 5.214 10 C 0.231 3.769 11 O -0.452 6.452 12 C -0.124 4.124 13 N -0.158 5.158 14 C -0.116 4.116 15 C -0.174 4.174 16 C -0.107 4.107 17 H 0.100 0.900 18 C 0.017 3.983 19 N -0.375 5.375 20 C 0.301 3.699 21 O -0.428 6.428 22 C -0.182 4.182 23 C -0.132 4.132 24 C 0.014 3.986 25 H 0.088 0.912 26 C -0.189 4.189 27 C -0.194 4.194 28 C -0.034 4.034 29 O -0.287 6.287 30 H 0.072 0.928 31 H 0.207 0.793 32 H 0.074 0.926 33 H 0.101 0.899 34 H 0.112 0.888 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.114 0.886 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.236 0.764 41 H 0.110 0.890 42 H 0.120 0.880 43 H 0.098 0.902 44 H 0.101 0.899 45 H 0.097 0.903 46 H 0.095 0.905 47 H 0.093 0.907 48 H 0.093 0.907 49 H 0.109 0.891 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.045 -15.852 -10.001 19.410 hybrid contribution -1.481 -1.161 0.642 1.988 sum -6.526 -17.012 -9.359 20.484 Atomic orbital electron populations 1.70849 1.06524 1.29382 1.47356 1.26502 0.96542 1.02634 0.95475 0.83061 0.74369 0.73194 0.77235 1.20900 1.21025 1.20949 1.20598 0.94695 0.83762 1.51934 0.88248 1.41948 1.08109 1.05561 1.65818 1.19513 0.88398 0.84111 0.84832 1.90543 1.13487 1.86749 1.54388 1.22546 0.95249 0.93287 1.01334 1.68885 1.18703 0.99088 1.29158 1.23589 1.02729 0.94314 0.90957 1.23193 0.97854 0.97183 0.99124 1.23815 0.97956 0.93183 0.95714 0.90045 1.21297 0.98317 0.93412 0.85286 1.46006 1.61514 1.17568 1.12417 1.20705 0.78780 0.87228 0.83198 1.90671 1.51923 1.18446 1.81740 1.21673 1.02258 1.00355 0.93920 1.21382 1.02681 0.97205 0.91966 1.23089 0.93419 0.87767 0.94321 0.91217 1.22984 1.02651 0.99115 0.94144 1.22943 1.02309 0.95835 0.98308 1.23404 0.99600 0.96194 0.84176 1.89197 1.53300 1.55031 1.31218 0.92760 0.79260 0.92592 0.89898 0.88838 0.91599 0.90473 0.88571 0.90827 0.91356 0.76394 0.89046 0.87963 0.90182 0.89922 0.90344 0.90532 0.90683 0.90651 0.89084 0.92257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.93 13.68 55.50 0.76 -24.17 16 2 C -0.01 -0.25 5.50 -17.47 -0.10 -0.34 16 3 Si 1.10 24.26 29.92 -169.99 -5.09 19.17 16 4 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.38 -10.59 9.68 -14.93 -0.14 -10.74 16 8 H 0.10 2.96 7.16 -52.48 -0.38 2.59 16 9 N -0.58 -14.19 5.28 -10.96 -0.06 -14.25 16 10 C 0.45 10.31 7.62 -10.98 -0.08 10.22 16 11 O -0.57 -15.41 15.34 5.55 0.09 -15.33 16 12 C 0.01 0.14 5.07 -4.97 -0.03 0.11 16 13 N -0.44 -6.83 5.63 -237.95 -1.34 -8.17 16 14 C 0.01 0.19 6.71 -7.55 -0.05 0.14 16 15 C -0.14 -1.47 8.00 -26.20 -0.21 -1.68 16 16 C 0.00 0.04 3.25 -71.44 -0.23 -0.19 16 17 H 0.08 0.84 7.77 -51.93 -0.40 0.44 16 18 C 0.14 1.70 5.81 -4.04 -0.02 1.67 16 19 N -0.72 -9.02 5.46 -60.29 -0.33 -9.35 16 20 C 0.51 6.85 7.83 -10.98 -0.09 6.76 16 21 O -0.55 -8.95 15.98 5.56 0.09 -8.86 16 22 C -0.14 -1.53 5.64 -27.88 -0.16 -1.69 16 23 C -0.09 -0.97 4.13 -26.73 -0.11 -1.08 16 24 C 0.07 0.66 3.25 -25.96 -0.08 0.58 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 26 C -0.15 -1.13 6.63 -25.16 -0.17 -1.30 16 27 C -0.16 -1.08 7.09 -25.17 -0.18 -1.26 16 28 C 0.04 0.37 7.63 37.93 0.29 0.66 16 29 O -0.37 -4.28 11.13 -35.23 -0.39 -4.67 16 30 H 0.26 6.90 6.77 -40.82 -0.28 6.63 16 31 H 0.37 8.46 6.73 -40.82 -0.27 8.19 16 32 H 0.06 0.82 7.56 -51.93 -0.39 0.43 16 33 H 0.08 1.21 6.33 -51.93 -0.33 0.88 16 34 H 0.09 1.55 8.13 -51.93 -0.42 1.13 16 35 H 0.07 0.93 7.70 -51.93 -0.40 0.53 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.10 1.03 7.93 -51.93 -0.41 0.62 16 38 H 0.07 0.99 7.87 -51.93 -0.41 0.58 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.40 4.76 6.22 -40.82 -0.25 4.50 16 41 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.10 1.19 8.01 -51.93 -0.42 0.77 16 43 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 44 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 45 H 0.08 0.60 7.87 -51.93 -0.41 0.19 16 46 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 48 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 49 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 403.13 15.07 6.08 6.08 Total: -1.00 -35.18 403.13 -9.77 -44.95 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: -8.21 Total: 12.73 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -1.36 Total: 1.87 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: -0.97 Total: -55.94 kcal Atomic # 8 Polarization: -28.64 SS G_CDS: -0.22 Total: -28.86 kcal Atomic # 14 Polarization: 24.26 SS G_CDS: -5.09 Total: 19.17 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.18 -9.77 -44.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483628154.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.332 kcal (2) G-P(sol) polarization free energy of solvation -35.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds