Wall clock time and date at job start Sat Apr 11 2020 05:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86798 * 120.00035 * 2 1 4 4 H 1.48506 * 109.47297 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00103 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00096 * 3 2 1 7 7 C 1.38946 * 119.99846 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99937 * 179.97438 * 7 2 1 9 9 N 1.37099 * 120.00239 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99952 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00443 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99823 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47332 * 180.02562 * 12 10 9 14 14 C 1.47480 * 110.99733 * 74.02547 * 13 12 10 15 15 C 1.53511 * 87.93076 * 138.70386 * 14 13 12 16 16 C 1.47477 * 111.00193 * 169.99721 * 13 12 10 17 17 H 1.09004 * 113.47618 * 336.06684 * 16 13 12 18 18 C 1.53004 * 113.47278 * 106.52665 * 16 13 12 19 19 N 1.46497 * 109.47256 * 305.00309 * 18 16 13 20 20 C 1.34781 * 119.99562 * 180.02562 * 19 18 16 21 21 O 1.21276 * 120.00178 * 359.97438 * 20 19 18 22 22 C 1.50700 * 119.99723 * 180.02562 * 20 19 18 23 23 C 1.53006 * 109.46897 * 179.97438 * 22 20 19 24 24 C 1.52993 * 109.46870 * 179.97438 * 23 22 20 25 25 H 1.09000 * 110.33812 * 307.24847 * 24 23 22 26 26 C 1.54484 * 110.37486 * 185.00041 * 24 23 22 27 27 C 1.54501 * 104.06586 * 217.19531 * 26 24 23 28 28 C 1.54476 * 104.06454 * 359.97438 * 27 26 24 29 29 O 1.44420 * 110.37485 * 69.62213 * 24 23 22 30 30 H 0.96993 * 120.00098 * 179.97438 * 1 2 3 31 31 H 0.96996 * 119.99546 * 0.02562 * 9 7 2 32 32 H 1.09005 * 109.46894 * 300.00473 * 12 10 9 33 33 H 1.09003 * 109.47186 * 59.99745 * 12 10 9 34 34 H 1.08996 * 113.47540 * 253.47220 * 14 13 12 35 35 H 1.09002 * 113.47528 * 23.93935 * 14 13 12 36 36 H 1.08999 * 114.17203 * 220.33013 * 15 14 13 37 37 H 1.09003 * 114.34381 * 87.63217 * 15 14 13 38 38 H 1.08996 * 109.46441 * 65.00635 * 18 16 13 39 39 H 1.09002 * 109.46784 * 185.00084 * 18 16 13 40 40 H 0.96996 * 120.00109 * 0.02562 * 19 18 16 41 41 H 1.08999 * 109.46708 * 299.99575 * 22 20 19 42 42 H 1.08993 * 109.47244 * 59.99974 * 22 20 19 43 43 H 1.08999 * 109.47276 * 299.99961 * 23 22 20 44 44 H 1.09002 * 109.46968 * 59.99786 * 23 22 20 45 45 H 1.09002 * 110.50812 * 335.83663 * 26 24 23 46 46 H 1.08999 * 110.51030 * 98.54313 * 26 24 23 47 47 H 1.08991 * 110.51560 * 118.64281 * 27 26 24 48 48 H 1.09008 * 110.50662 * 241.35361 * 27 26 24 49 49 H 1.09001 * 110.37662 * 142.81182 * 28 27 26 50 50 H 1.09006 * 110.37545 * 265.15384 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3464 0.0006 5 1 1.8894 2.3964 1.2125 6 1 1.8894 2.3965 -1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0016 11 8 3.2101 -3.5579 -0.0021 12 6 1.2437 -4.8629 -0.0022 13 7 2.1983 -5.9796 -0.0027 14 6 2.8297 -6.1356 1.3210 15 6 2.6789 -7.6539 1.1521 16 6 1.5111 -7.2625 0.2359 17 1 0.5628 -7.1557 0.7627 18 6 1.3988 -8.1356 -1.0155 19 7 0.7487 -7.3746 -2.0853 20 6 0.5415 -7.9456 -3.2884 21 8 0.8936 -9.0893 -3.4855 22 6 -0.1267 -7.1626 -4.3890 23 6 -0.2390 -8.0359 -5.6403 24 6 -0.9180 -7.2411 -6.7575 25 1 -1.8612 -6.8231 -6.4058 26 6 -1.1554 -8.1414 -7.9903 27 6 -0.8982 -7.2065 -9.1931 28 6 -0.5365 -5.8518 -8.5450 29 8 -0.0455 -6.1916 -7.2297 30 1 -0.4850 -0.8400 -0.0004 31 1 0.3534 -2.3906 -0.0005 32 1 0.6173 -4.9212 0.8880 33 1 0.6167 -4.9201 -0.8919 34 1 3.8672 -5.8027 1.3491 35 1 2.2333 -5.7282 2.1373 36 1 2.3780 -8.1763 2.0602 37 1 3.5103 -8.1333 0.6352 38 1 2.3951 -8.4377 -1.3382 39 1 0.8062 -9.0218 -0.7882 40 1 0.4675 -6.4597 -1.9277 41 1 -1.1227 -6.8597 -4.0662 42 1 0.4665 -6.2770 -4.6166 43 1 0.7572 -8.3384 -5.9629 44 1 -0.8320 -8.9218 -5.4131 45 1 -0.4518 -8.9739 -7.9963 46 1 -2.1819 -8.5076 -8.0037 47 1 -0.0676 -7.5767 -9.7939 48 1 -1.7977 -7.1105 -9.8013 49 1 0.2407 -5.3505 -9.1219 50 1 -1.4210 -5.2194 -8.4686 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483628154.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:40 Heat of formation + Delta-G solvation = -119.075362 kcal Electronic energy + Delta-G solvation = -29480.951263 eV Core-core repulsion = 25314.711077 eV Total energy + Delta-G solvation = -4166.240186 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.73783 -40.75814 -40.14976 -39.69010 -36.37351 -35.59954 -34.59976 -33.26830 -32.97092 -32.08359 -30.30649 -28.74676 -27.36394 -25.44570 -25.39622 -23.88848 -22.61706 -21.85199 -21.57474 -21.38067 -20.64507 -19.98335 -18.28107 -18.14261 -17.50047 -17.40699 -17.05716 -16.82051 -16.54273 -16.40727 -16.21672 -16.09740 -15.49928 -15.42979 -15.28572 -14.70223 -14.60444 -14.56001 -14.08940 -13.79099 -13.76601 -13.36414 -13.13210 -12.84511 -12.80421 -12.76695 -12.61229 -12.44059 -12.35359 -12.02276 -11.98216 -11.93212 -11.88635 -11.84113 -11.68418 -11.51694 -11.48667 -10.87226 -10.71754 -10.42090 -10.11175 -10.08635 -9.83305 -8.93203 -6.07160 1.51148 1.53123 1.61808 1.80350 1.98725 2.15558 2.38088 2.72877 2.97312 3.13140 3.17074 3.47920 3.59191 3.71999 3.73829 3.81623 3.98156 4.03946 4.06169 4.09091 4.13852 4.18436 4.27246 4.32768 4.34849 4.38112 4.46498 4.54340 4.62240 4.72252 4.74421 4.80500 4.83582 4.86874 4.95781 4.96451 5.04878 5.08113 5.14693 5.16433 5.24424 5.27861 5.48016 5.60407 5.93722 5.95241 5.99694 6.48095 6.56940 6.74242 7.19848 7.43030 7.92460 8.54861 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.007648 B = 0.002799 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3660.232266 B =10002.954827 C =13181.663121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.040 4.040 3 Si 1.135 2.865 4 H -0.283 1.283 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.408 4.408 8 H 0.069 0.931 9 N -0.586 5.586 10 C 0.444 3.556 11 O -0.614 6.614 12 C 0.021 3.979 13 N -0.468 5.468 14 C 0.003 3.997 15 C -0.115 4.115 16 C 0.017 3.983 17 H 0.109 0.891 18 C 0.141 3.859 19 N -0.720 5.720 20 C 0.511 3.489 21 O -0.583 6.583 22 C -0.137 4.137 23 C -0.090 4.090 24 C 0.069 3.931 25 H 0.084 0.916 26 C -0.150 4.150 27 C -0.152 4.152 28 C 0.034 3.966 29 O -0.402 6.402 30 H 0.261 0.739 31 H 0.385 0.615 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.110 0.890 37 H 0.094 0.906 38 H 0.055 0.945 39 H 0.084 0.916 40 H 0.404 0.596 41 H 0.118 0.882 42 H 0.092 0.908 43 H 0.055 0.945 44 H 0.089 0.911 45 H 0.072 0.928 46 H 0.096 0.904 47 H 0.074 0.926 48 H 0.095 0.905 49 H 0.092 0.908 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.646 -17.763 -9.310 21.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.239 4.239 3 Si 0.955 3.045 4 H -0.208 1.208 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.537 4.537 8 H 0.087 0.913 9 N -0.226 5.226 10 C 0.232 3.768 11 O -0.499 6.499 12 C -0.110 4.110 13 N -0.191 5.191 14 C -0.126 4.126 15 C -0.153 4.153 16 C -0.092 4.092 17 H 0.126 0.874 18 C 0.017 3.983 19 N -0.371 5.371 20 C 0.299 3.701 21 O -0.464 6.464 22 C -0.177 4.177 23 C -0.128 4.128 24 C 0.012 3.988 25 H 0.102 0.898 26 C -0.188 4.188 27 C -0.190 4.190 28 C -0.042 4.042 29 O -0.322 6.322 30 H 0.072 0.928 31 H 0.219 0.781 32 H 0.103 0.897 33 H 0.125 0.875 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.129 0.871 37 H 0.112 0.888 38 H 0.073 0.927 39 H 0.102 0.898 40 H 0.240 0.760 41 H 0.136 0.864 42 H 0.110 0.890 43 H 0.074 0.926 44 H 0.108 0.892 45 H 0.091 0.909 46 H 0.114 0.886 47 H 0.093 0.907 48 H 0.113 0.887 49 H 0.111 0.889 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.193 -16.684 -9.934 20.707 hybrid contribution -0.769 -0.971 0.627 1.388 sum -7.962 -17.655 -9.307 21.487 Atomic orbital electron populations 1.70912 1.06864 1.29593 1.48151 1.27728 0.96722 1.05142 0.94261 0.82584 0.73405 0.70291 0.78180 1.20812 1.19564 1.19657 1.20509 0.93704 0.85703 1.53781 0.91316 1.41983 1.08571 1.05412 1.66585 1.20713 0.88264 0.85748 0.82081 1.90518 1.15942 1.87793 1.55655 1.22455 0.94932 0.89859 1.03803 1.68878 1.19782 1.00286 1.30148 1.23623 1.00920 0.97292 0.90765 1.23135 0.97400 0.94578 1.00188 1.23847 0.99120 0.90556 0.95698 0.87364 1.21329 0.97649 0.94038 0.85266 1.46032 1.61001 1.17697 1.12399 1.21129 0.78329 0.86936 0.83746 1.90653 1.53420 1.19999 1.82317 1.21686 1.03174 0.99505 0.93302 1.21333 1.01604 0.97621 0.92238 1.23192 0.93300 0.87664 0.94636 0.89849 1.23003 1.03663 0.98676 0.93465 1.22942 1.03214 0.94628 0.98178 1.23595 1.00039 0.97326 0.83252 1.89160 1.54501 1.55832 1.32734 0.92822 0.78082 0.89718 0.87488 0.92157 0.91009 0.87139 0.88775 0.92684 0.89766 0.75950 0.86364 0.88998 0.92617 0.89228 0.90950 0.88592 0.90696 0.88688 0.88934 0.91319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.18 13.68 21.66 0.30 -49.88 16 2 C -0.04 -2.15 5.50 84.93 0.47 -1.69 16 3 Si 1.13 48.63 29.92 68.60 2.05 50.68 16 4 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 6 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 7 C -0.41 -23.17 9.68 84.04 0.81 -22.36 16 8 H 0.07 4.27 7.16 -2.91 -0.02 4.25 16 9 N -0.59 -29.12 5.28 -306.98 -1.62 -30.75 16 10 C 0.44 20.65 7.62 87.66 0.67 21.31 16 11 O -0.61 -34.27 15.34 -3.05 -0.05 -34.31 16 12 C 0.02 0.67 5.07 85.56 0.43 1.10 16 13 N -0.47 -14.04 5.63 -906.73 -5.10 -19.15 16 14 C 0.00 0.08 6.71 83.57 0.56 0.64 16 15 C -0.12 -2.21 8.00 30.94 0.25 -1.96 16 16 C 0.02 0.35 3.25 42.19 0.14 0.49 16 17 H 0.11 1.72 7.77 -2.39 -0.02 1.70 16 18 C 0.14 3.12 5.81 86.38 0.50 3.62 16 19 N -0.72 -16.79 5.46 -463.06 -2.53 -19.32 16 20 C 0.51 13.17 7.83 87.66 0.69 13.86 16 21 O -0.58 -18.84 15.98 -3.02 -0.05 -18.89 16 22 C -0.14 -2.82 5.64 29.85 0.17 -2.66 16 23 C -0.09 -1.81 4.13 30.59 0.13 -1.69 16 24 C 0.07 1.21 3.25 31.10 0.10 1.31 16 25 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 26 C -0.15 -2.02 6.63 31.61 0.21 -1.81 16 27 C -0.15 -1.87 7.09 31.61 0.22 -1.64 16 28 C 0.03 0.55 7.63 72.48 0.55 1.11 16 29 O -0.40 -9.23 11.13 -148.98 -1.66 -10.89 16 30 H 0.26 13.70 6.77 -92.71 -0.63 13.07 16 31 H 0.38 17.29 6.73 -92.71 -0.62 16.67 16 32 H 0.09 2.21 7.56 -2.38 -0.02 2.19 16 33 H 0.11 2.85 6.33 -2.39 -0.02 2.83 16 34 H 0.06 2.07 8.13 -2.39 -0.02 2.06 16 35 H 0.07 1.91 7.70 -2.39 -0.02 1.89 16 36 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.09 1.87 7.93 -2.39 -0.02 1.85 16 38 H 0.05 1.43 7.87 -2.39 -0.02 1.42 16 39 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.40 8.74 6.22 -92.71 -0.58 8.17 16 41 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.09 2.12 8.01 -2.39 -0.02 2.10 16 43 H 0.05 1.38 8.10 -2.39 -0.02 1.36 16 44 H 0.09 1.65 8.10 -2.39 -0.02 1.63 16 45 H 0.07 1.05 7.87 -2.39 -0.02 1.03 16 46 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 48 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 49 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 50 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 Total: -1.00 -78.72 403.13 -2.87 -81.59 By element: Atomic # 1 Polarization: 41.38 SS G_CDS: -0.11 Total: 41.27 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: 5.90 Total: 9.64 kcal Atomic # 7 Polarization: -110.13 SS G_CDS: -8.96 Total: -119.09 kcal Atomic # 8 Polarization: -62.35 SS G_CDS: -1.75 Total: -64.10 kcal Atomic # 14 Polarization: 48.63 SS G_CDS: 2.05 Total: 50.68 kcal Total: -78.72 -2.87 -81.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483628154.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.482 kcal (2) G-P(sol) polarization free energy of solvation -78.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds