Wall clock time and date at job start Sat Apr 11 2020 05:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86793 * 120.00102 * 2 1 4 4 H 1.48500 * 109.47187 * 240.00016 * 3 2 1 5 5 H 1.48497 * 109.47328 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47209 * 119.99985 * 3 2 1 7 7 C 1.38946 * 119.99472 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99907 * 180.02562 * 7 2 1 9 9 N 1.37093 * 120.00487 * 0.02562 * 7 2 1 10 10 C 1.34780 * 120.00077 * 180.02562 * 9 7 2 11 11 O 1.21288 * 120.00167 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99697 * 180.02562 * 10 9 7 13 13 N 1.46903 * 109.46939 * 179.97438 * 12 10 9 14 14 C 1.47472 * 111.00318 * 285.97215 * 13 12 10 15 15 C 1.53631 * 87.95521 * 221.34806 * 14 13 12 16 16 C 1.47483 * 111.00215 * 189.99603 * 13 12 10 17 17 H 1.08995 * 113.47265 * 23.88137 * 16 13 12 18 18 C 1.53000 * 113.47575 * 253.47238 * 16 13 12 19 19 N 1.46498 * 109.47120 * 56.10706 * 18 16 13 20 20 C 1.34778 * 119.99600 * 180.02562 * 19 18 16 21 21 O 1.21276 * 120.00407 * 359.97438 * 20 19 18 22 22 C 1.50704 * 119.99721 * 179.97438 * 20 19 18 23 23 C 1.52992 * 109.47318 * 179.97438 * 22 20 19 24 24 C 1.53002 * 109.47402 * 179.97438 * 23 22 20 25 25 H 1.08993 * 110.55151 * 307.88070 * 24 23 22 26 26 C 1.54991 * 110.61707 * 184.99860 * 24 23 22 27 27 C 1.54810 * 102.09350 * 204.31975 * 26 24 23 28 28 C 1.54106 * 104.18526 * 20.88072 * 27 26 24 29 29 O 1.43745 * 107.29161 * 2.03378 * 28 27 26 30 30 H 0.97003 * 119.99737 * 359.97438 * 1 2 3 31 31 H 0.96997 * 120.00236 * 359.97438 * 9 7 2 32 32 H 1.08997 * 109.47483 * 60.00215 * 12 10 9 33 33 H 1.09003 * 109.47441 * 299.99234 * 12 10 9 34 34 H 1.09000 * 113.47816 * 336.06219 * 14 13 12 35 35 H 1.09000 * 113.48381 * 106.46818 * 14 13 12 36 36 H 1.09003 * 114.16984 * 272.34796 * 15 14 13 37 37 H 1.08999 * 114.21019 * 139.60827 * 15 14 13 38 38 H 1.08995 * 109.47229 * 296.09802 * 18 16 13 39 39 H 1.09002 * 109.46517 * 176.10534 * 18 16 13 40 40 H 0.97003 * 119.99836 * 359.97438 * 19 18 16 41 41 H 1.09003 * 109.47494 * 59.99205 * 22 20 19 42 42 H 1.09000 * 109.46735 * 299.99952 * 22 20 19 43 43 H 1.09003 * 109.47299 * 59.99316 * 23 22 20 44 44 H 1.09001 * 109.47126 * 300.00291 * 23 22 20 45 45 H 1.09005 * 110.90880 * 86.12205 * 26 24 23 46 46 H 1.09001 * 110.94109 * 322.52741 * 26 24 23 47 47 H 1.09000 * 110.49118 * 262.21058 * 27 26 24 48 48 H 1.08996 * 110.60415 * 139.61242 * 27 26 24 49 49 H 1.09004 * 109.87542 * 121.45649 * 28 27 26 50 50 H 1.09000 * 109.87721 * 242.60820 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2832 2.7464 -0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0087 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9971 -3.5579 0.0016 11 8 3.2100 -3.5579 0.0021 12 6 1.2435 -4.8629 0.0010 13 7 2.1981 -5.9795 0.0017 14 6 2.8306 -6.1351 -1.3214 15 6 2.6785 -7.6547 -1.1542 16 6 1.5111 -7.2624 -0.2378 17 1 0.5628 -7.1554 -0.7643 18 6 1.3979 -8.1360 1.0131 19 7 0.7233 -7.3844 2.0743 20 6 0.5120 -7.9572 3.2759 21 8 0.8798 -9.0949 3.4785 22 6 -0.1815 -7.1838 4.3677 23 6 -0.2948 -8.0574 5.6186 24 6 -0.9982 -7.2720 6.7273 25 1 -0.5146 -6.3070 6.8785 26 6 -1.0159 -8.0862 8.0460 27 6 -2.2358 -7.4824 8.7836 28 6 -3.0697 -6.8306 7.6635 29 8 -2.3981 -7.0968 6.4208 30 1 -0.4850 0.8401 0.0004 31 1 0.3533 -2.3907 0.0005 32 1 0.6179 -4.9209 -0.8897 33 1 0.6159 -4.9205 0.8903 34 1 2.2349 -5.7274 -2.1381 35 1 3.8678 -5.8013 -1.3489 36 1 3.5108 -8.1323 -0.6371 37 1 2.3771 -8.1764 -2.0626 38 1 2.3950 -8.4222 1.3479 39 1 0.8221 -9.0317 0.7798 40 1 0.4295 -6.4742 1.9124 41 1 -1.1787 -6.8976 4.0333 42 1 0.3945 -6.2882 4.6006 43 1 0.7023 -8.3440 5.9532 44 1 -0.8709 -8.9528 5.3854 45 1 -0.0996 -7.9264 8.6142 46 1 -1.1679 -9.1470 7.8468 47 1 -1.9124 -6.7316 9.5046 48 1 -2.8095 -8.2648 9.2803 49 1 -4.0693 -7.2650 7.6451 50 1 -3.1338 -5.7549 7.8273 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483628166.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:46 Heat of formation + Delta-G solvation = -92.902229 kcal Electronic energy + Delta-G solvation = -29361.864802 eV Core-core repulsion = 25196.759568 eV Total energy + Delta-G solvation = -4165.105234 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.51787 -39.82817 -39.16102 -37.77131 -34.54558 -33.94157 -33.72471 -32.33628 -31.42641 -30.71535 -29.40580 -27.85206 -25.85109 -24.61117 -23.77762 -22.85312 -21.75990 -21.27081 -20.34519 -19.60140 -19.30378 -17.95048 -17.24571 -16.94123 -16.26994 -16.17937 -15.92765 -15.66327 -15.58686 -15.14618 -14.87779 -14.57595 -14.08103 -14.03219 -13.90961 -13.71560 -13.60790 -13.18875 -13.06962 -12.65261 -12.36214 -12.04969 -11.96341 -11.92386 -11.73306 -11.66805 -11.52965 -11.40368 -11.19459 -11.08101 -11.01832 -10.97361 -10.83144 -10.52146 -10.46993 -10.24841 -9.89185 -9.76234 -9.53385 -9.00229 -8.79042 -8.30450 -8.00853 -6.45681 -3.86648 2.70591 3.16172 3.17774 3.23320 3.27548 3.59661 3.82800 3.96140 4.18552 4.26144 4.38215 4.46614 4.60888 4.72271 4.75404 4.77266 4.91053 4.94041 5.00121 5.07941 5.16942 5.19713 5.29926 5.36956 5.39285 5.40806 5.42805 5.47956 5.51004 5.58662 5.62641 5.64532 5.70690 5.76133 5.80984 5.88399 5.89657 6.03617 6.07262 6.19466 6.23681 6.43666 6.57922 6.67826 7.16579 7.51213 7.53552 8.00948 8.26434 8.56667 9.13778 9.49016 10.00707 10.71887 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.007854 B = 0.002668 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3564.296712 B =10493.792942 C =13526.069794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.930 3.070 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.300 4.300 8 H 0.102 0.898 9 N -0.563 5.563 10 C 0.443 3.557 11 O -0.577 6.577 12 C 0.008 3.992 13 N -0.436 5.436 14 C 0.013 3.987 15 C -0.136 4.136 16 C 0.003 3.997 17 H 0.082 0.918 18 C 0.141 3.859 19 N -0.723 5.723 20 C 0.514 3.486 21 O -0.550 6.550 22 C -0.142 4.142 23 C -0.094 4.094 24 C 0.073 3.927 25 H 0.073 0.927 26 C -0.150 4.150 27 C -0.157 4.157 28 C 0.046 3.954 29 O -0.374 6.374 30 H 0.272 0.728 31 H 0.392 0.608 32 H 0.057 0.943 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.401 0.599 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.079 0.921 47 H 0.074 0.926 48 H 0.076 0.924 49 H 0.082 0.918 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.215 -16.164 9.605 19.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.429 4.429 8 H 0.120 0.880 9 N -0.200 5.200 10 C 0.228 3.772 11 O -0.460 6.460 12 C -0.124 4.124 13 N -0.159 5.159 14 C -0.116 4.116 15 C -0.174 4.174 16 C -0.107 4.107 17 H 0.100 0.900 18 C 0.017 3.983 19 N -0.375 5.375 20 C 0.301 3.699 21 O -0.429 6.429 22 C -0.182 4.182 23 C -0.132 4.132 24 C 0.016 3.984 25 H 0.091 0.909 26 C -0.188 4.188 27 C -0.195 4.195 28 C -0.031 4.031 29 O -0.293 6.293 30 H 0.082 0.918 31 H 0.225 0.775 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.237 0.763 41 H 0.117 0.883 42 H 0.113 0.887 43 H 0.103 0.897 44 H 0.097 0.903 45 H 0.099 0.901 46 H 0.097 0.903 47 H 0.093 0.907 48 H 0.094 0.906 49 H 0.100 0.900 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.976 -16.674 10.148 20.144 hybrid contribution -1.016 1.562 -0.533 1.939 sum -5.992 -15.112 9.614 18.887 Atomic orbital electron populations 1.69601 1.05928 1.28317 1.50432 1.25255 0.95636 0.99716 0.97249 0.85921 0.78782 0.80450 0.79107 1.19911 1.20948 1.19856 1.19639 0.93319 0.82188 1.47780 0.87998 1.41859 1.09139 1.04579 1.64426 1.19596 0.88365 0.84370 0.84849 1.90534 1.13575 1.86910 1.54995 1.22541 0.95200 0.93207 1.01451 1.68871 1.18754 0.99147 1.29113 1.23602 1.02692 0.94202 0.91060 1.23214 0.97849 0.97253 0.99108 1.23806 0.97964 0.93243 0.95657 0.90022 1.21295 0.97920 0.93563 0.85522 1.46009 1.60408 1.18235 1.12820 1.20695 0.78912 0.87094 0.83202 1.90670 1.52001 1.18720 1.81480 1.21673 1.02428 0.99785 0.94338 1.21344 1.01129 0.98194 0.92493 1.23245 0.83050 0.98044 0.94045 0.90918 1.23158 0.98578 1.00911 0.96173 1.22940 0.97095 1.00850 0.98630 1.23130 0.96712 0.99601 0.83648 1.88898 1.19261 1.92437 1.28697 0.91782 0.77529 0.92512 0.89846 0.91592 0.88886 0.88650 0.90512 0.90862 0.91399 0.76326 0.88270 0.88666 0.89750 0.90297 0.90099 0.90252 0.90707 0.90571 0.90008 0.92348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.10 13.05 55.50 0.72 -23.38 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 3 Si 0.93 20.81 29.55 -169.99 -5.02 15.78 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.30 -8.22 9.68 -14.94 -0.14 -8.36 16 8 H 0.10 2.94 7.16 -52.48 -0.38 2.57 16 9 N -0.56 -13.90 5.29 -10.96 -0.06 -13.96 16 10 C 0.44 10.16 7.62 -10.98 -0.08 10.07 16 11 O -0.58 -15.36 15.33 5.55 0.09 -15.28 16 12 C 0.01 0.14 5.08 -4.97 -0.03 0.11 16 13 N -0.44 -6.81 5.66 -237.75 -1.35 -8.16 16 14 C 0.01 0.19 6.71 -7.49 -0.05 0.14 16 15 C -0.14 -1.48 8.01 -26.14 -0.21 -1.69 16 16 C 0.00 0.04 3.24 -71.43 -0.23 -0.19 16 17 H 0.08 0.86 7.77 -51.93 -0.40 0.46 16 18 C 0.14 1.71 5.80 -4.04 -0.02 1.69 16 19 N -0.72 -9.04 5.47 -60.30 -0.33 -9.37 16 20 C 0.51 6.86 7.83 -10.98 -0.09 6.77 16 21 O -0.55 -8.98 15.98 5.56 0.09 -8.89 16 22 C -0.14 -1.53 5.65 -27.88 -0.16 -1.69 16 23 C -0.09 -0.96 4.27 -26.73 -0.11 -1.08 16 24 C 0.07 0.68 3.28 -25.68 -0.08 0.60 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 C -0.15 -1.13 6.58 -24.73 -0.16 -1.29 16 27 C -0.16 -1.04 7.01 -25.20 -0.18 -1.22 16 28 C 0.05 0.37 7.70 37.74 0.29 0.66 16 29 O -0.37 -4.07 11.09 -35.23 -0.39 -4.46 16 30 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 31 H 0.39 9.20 7.90 -40.82 -0.32 8.88 16 32 H 0.06 0.85 7.56 -51.93 -0.39 0.45 16 33 H 0.08 1.23 6.34 -51.93 -0.33 0.90 16 34 H 0.07 0.93 7.70 -51.93 -0.40 0.53 16 35 H 0.09 1.54 8.13 -51.93 -0.42 1.11 16 36 H 0.09 1.02 7.95 -51.93 -0.41 0.61 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.98 7.90 -51.93 -0.41 0.57 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.40 4.77 6.27 -40.82 -0.26 4.51 16 41 H 0.10 1.02 8.06 -51.93 -0.42 0.60 16 42 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 44 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 45 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.08 0.60 8.06 -51.93 -0.42 0.18 16 47 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 48 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 50 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 405.29 15.07 6.11 6.11 Total: -1.00 -33.41 405.29 -9.84 -43.25 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: -8.34 Total: 13.31 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: -1.35 Total: 5.05 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: -1.01 Total: -54.87 kcal Atomic # 8 Polarization: -28.42 SS G_CDS: -0.22 Total: -28.63 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.41 -9.84 -43.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483628166.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.650 kcal (2) G-P(sol) polarization free energy of solvation -33.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds