Wall clock time and date at job start Sat Apr 11 2020 05:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50700 * 109.51995 * 2 1 4 4 O 1.21277 * 120.00019 * 119.87825 * 3 2 1 5 5 N 1.34777 * 120.00145 * 299.87549 * 3 2 1 6 6 C 1.46494 * 119.99903 * 180.02562 * 5 3 2 7 7 C 1.53004 * 109.47221 * 174.96407 * 6 5 3 8 8 N 1.46894 * 115.55113 * 83.96367 * 7 6 5 9 9 C 1.46900 * 111.00165 * 65.27081 * 8 7 6 10 10 C 1.50699 * 109.47590 * 175.16579 * 9 8 7 11 11 O 1.21299 * 119.99389 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00343 * 180.02562 * 10 9 8 13 13 C 1.37102 * 120.00056 * 180.02562 * 12 10 9 14 14 H 1.07997 * 119.99609 * 359.71773 * 13 12 10 15 15 C 1.38943 * 120.00003 * 179.97438 * 13 12 10 16 16 N 1.31410 * 119.99924 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00220 * 180.02562 * 15 13 12 18 18 H 1.48491 * 109.47435 * 89.99205 * 17 15 13 19 19 H 1.48497 * 109.47101 * 210.00078 * 17 15 13 20 20 H 1.48509 * 109.46560 * 329.99593 * 17 15 13 21 21 C 1.53002 * 117.49575 * 229.63725 * 7 6 5 22 22 C 1.52996 * 117.49518 * 298.29311 * 7 6 5 23 23 C 1.53173 * 109.57585 * 120.16122 * 2 1 3 24 24 C 1.53173 * 109.03842 * 176.91673 * 23 2 1 25 25 C 1.53088 * 109.16068 * 303.01727 * 24 23 2 26 26 O 1.42900 * 109.41470 * 57.61001 * 25 24 23 27 27 C 1.42901 * 114.09852 * 298.83777 * 26 25 24 28 28 H 1.08996 * 109.47040 * 59.99884 * 1 2 3 29 29 H 1.08998 * 109.47197 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46674 * 300.00026 * 1 2 3 31 31 H 0.96998 * 120.00242 * 359.97438 * 5 3 2 32 32 H 1.08993 * 109.47657 * 54.95807 * 6 5 3 33 33 H 1.09007 * 109.47021 * 294.96155 * 6 5 3 34 34 H 1.00904 * 110.99992 * 189.22266 * 8 7 6 35 35 H 1.08998 * 109.46908 * 55.16101 * 9 8 7 36 36 H 1.09006 * 109.47065 * 295.16667 * 9 8 7 37 37 H 0.96998 * 119.99872 * 359.97438 * 12 10 9 38 38 H 0.97008 * 120.00077 * 180.02562 * 16 15 13 39 39 H 1.09002 * 117.49699 * 215.00101 * 21 7 6 40 40 H 1.08996 * 117.49866 * 0.02562 * 21 7 6 41 41 H 1.09001 * 117.49914 * 359.97438 * 22 7 6 42 42 H 1.09000 * 117.49766 * 144.97345 * 22 7 6 43 43 H 1.09005 * 109.53807 * 296.78631 * 23 2 1 44 44 H 1.08997 * 109.54321 * 57.04308 * 23 2 1 45 45 H 1.09003 * 109.52290 * 183.10802 * 24 23 2 46 46 H 1.08997 * 109.52326 * 62.92236 * 24 23 2 47 47 H 1.09001 * 109.48290 * 297.62532 * 25 24 23 48 48 H 1.09000 * 109.48559 * 177.59500 * 25 24 23 49 49 H 1.09005 * 109.48278 * 301.17812 * 27 26 25 50 50 H 1.09002 * 109.49158 * 181.14716 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0336 1.4204 0.0000 4 8 2.7294 1.8171 0.9107 5 7 1.7108 2.2498 -1.0121 6 6 2.2008 3.6304 -1.0123 7 6 1.8000 4.3136 -2.3213 8 7 0.4447 4.8793 -2.3516 9 6 0.3146 5.9862 -1.3945 10 6 -1.0467 6.6166 -1.5373 11 8 -1.8313 6.1864 -2.3563 12 7 -1.3921 7.6589 -0.7558 13 6 -2.6308 8.2320 -0.8854 14 1 -3.3281 7.8511 -1.6169 15 6 -2.9870 9.3063 -0.0794 16 7 -2.1367 9.7726 0.8075 17 14 -4.6750 10.0867 -0.2554 18 1 -5.6319 9.4070 0.6540 19 1 -4.5937 11.5268 0.0979 20 1 -5.1410 9.9469 -1.6586 21 6 2.8924 5.0550 -3.0946 22 6 2.3490 3.7249 -3.6224 23 6 2.0433 -0.7251 1.2478 24 6 3.5730 -0.7856 1.1969 25 6 4.0056 -1.4794 -0.0974 26 8 3.4695 -0.7723 -1.2175 27 6 2.0416 -0.7242 -1.2481 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.1547 1.9325 -1.7407 32 1 3.2868 3.6306 -0.9201 33 1 1.7647 4.1708 -0.1720 34 1 0.1976 5.1764 -3.2837 35 1 1.0834 6.7323 -1.5953 36 1 0.4341 5.6053 -0.3802 37 1 -0.7645 8.0031 -0.1012 38 1 -2.3856 10.5224 1.3705 39 1 2.6055 5.9625 -3.6257 40 1 3.8967 5.0555 -2.6709 41 1 2.9961 2.8511 -3.5457 42 1 1.7044 3.7569 -4.5007 43 1 1.7292 -0.1827 2.1397 44 1 1.6390 -1.7370 1.2737 45 1 3.9440 -1.3483 2.0535 46 1 3.9785 0.2259 1.2210 47 1 3.6337 -2.5040 -0.1024 48 1 5.0938 -1.4873 -0.1595 49 1 1.6440 -1.7389 -1.2682 50 1 1.7147 -0.1880 -2.1390 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483779780.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:51 Heat of formation + Delta-G solvation = -124.956174 kcal Electronic energy + Delta-G solvation = -30385.728404 eV Core-core repulsion = 26219.233207 eV Total energy + Delta-G solvation = -4166.495197 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.81573 -40.47846 -39.59976 -38.83078 -36.05424 -35.52496 -35.26778 -33.93903 -33.22438 -32.93646 -28.44200 -28.15053 -27.88064 -26.00048 -25.89534 -24.19134 -23.34888 -22.44281 -21.19851 -20.96890 -20.11336 -19.92913 -18.10620 -17.90567 -17.33916 -16.98540 -16.92939 -16.76797 -16.40224 -16.27450 -15.99469 -15.81761 -15.61431 -15.32162 -15.12594 -14.77058 -14.64575 -14.14634 -13.96165 -13.63682 -13.59625 -13.53976 -13.33227 -13.17250 -12.98709 -12.94999 -12.88976 -12.87407 -12.44173 -12.42581 -12.13247 -11.97451 -11.87450 -11.54722 -11.52868 -11.43961 -11.23832 -10.69661 -10.37051 -10.32882 -10.04811 -9.99331 -9.30440 -8.48761 -5.98094 1.36748 1.40717 1.53647 1.68072 2.00642 2.09213 2.26658 2.64098 2.95633 3.04489 3.18556 3.40009 3.52005 3.58748 3.64383 3.77685 3.82209 3.96260 4.02371 4.13565 4.25090 4.28486 4.43340 4.47738 4.50766 4.55325 4.57575 4.65374 4.70126 4.72219 4.73980 4.74424 4.77572 4.87903 4.95096 4.97403 5.03928 5.19399 5.19950 5.24629 5.38553 5.38988 5.54637 5.83054 6.03628 6.22775 6.31410 6.55850 6.60648 7.09181 7.29445 7.52134 8.06098 8.68670 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016556 B = 0.002343 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.802649 B =11949.492010 C =12684.906170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.112 4.112 3 C 0.524 3.476 4 O -0.580 6.580 5 N -0.706 5.706 6 C 0.173 3.827 7 C 0.024 3.976 8 N -0.634 5.634 9 C 0.067 3.933 10 C 0.439 3.561 11 O -0.621 6.621 12 N -0.572 5.572 13 C -0.333 4.333 14 H 0.081 0.919 15 C -0.014 4.014 16 N -0.921 5.921 17 Si 0.994 3.006 18 H -0.271 1.271 19 H -0.271 1.271 20 H -0.271 1.271 21 C -0.200 4.200 22 C -0.143 4.143 23 C -0.096 4.096 24 C -0.166 4.166 25 C 0.059 3.941 26 O -0.400 6.400 27 C 0.073 3.927 28 H 0.070 0.930 29 H 0.095 0.905 30 H 0.049 0.951 31 H 0.411 0.589 32 H 0.074 0.926 33 H 0.051 0.949 34 H 0.352 0.648 35 H 0.066 0.934 36 H 0.093 0.907 37 H 0.395 0.605 38 H 0.278 0.722 39 H 0.095 0.905 40 H 0.108 0.892 41 H 0.115 0.885 42 H 0.107 0.893 43 H 0.054 0.946 44 H 0.095 0.905 45 H 0.084 0.916 46 H 0.060 0.940 47 H 0.072 0.928 48 H 0.096 0.904 49 H 0.088 0.912 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.827 -22.555 -3.723 26.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.115 4.115 3 C 0.311 3.689 4 O -0.460 6.460 5 N -0.357 5.357 6 C 0.048 3.952 7 C -0.069 4.069 8 N -0.265 5.265 9 C -0.065 4.065 10 C 0.227 3.773 11 O -0.507 6.507 12 N -0.209 5.209 13 C -0.463 4.463 14 H 0.099 0.901 15 C -0.214 4.214 16 N -0.562 5.562 17 Si 0.818 3.182 18 H -0.197 1.197 19 H -0.196 1.196 20 H -0.195 1.195 21 C -0.240 4.240 22 C -0.180 4.180 23 C -0.134 4.134 24 C -0.203 4.203 25 C -0.018 4.018 26 O -0.319 6.319 27 C -0.004 4.004 28 H 0.089 0.911 29 H 0.114 0.886 30 H 0.069 0.931 31 H 0.247 0.753 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.172 0.828 35 H 0.084 0.916 36 H 0.111 0.889 37 H 0.229 0.771 38 H 0.087 0.913 39 H 0.114 0.886 40 H 0.127 0.873 41 H 0.134 0.866 42 H 0.125 0.875 43 H 0.073 0.927 44 H 0.114 0.886 45 H 0.102 0.898 46 H 0.079 0.921 47 H 0.090 0.910 48 H 0.114 0.886 49 H 0.106 0.894 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 12.610 -22.750 -3.193 26.207 hybrid contribution -0.419 1.657 0.126 1.714 sum 12.192 -21.093 -3.067 24.555 Atomic orbital electron populations 1.21811 0.90408 1.04577 1.02845 1.21548 0.98589 0.91418 0.99986 1.20845 0.78997 0.88083 0.80932 1.90614 1.39888 1.78099 1.37395 1.45812 1.53190 1.11421 1.25305 1.20550 0.98383 0.81590 0.94635 1.21770 0.87516 1.03781 0.93793 1.59893 1.22197 1.32958 1.11471 1.21478 0.93067 0.93134 0.98865 1.20731 0.90527 0.82323 0.83761 1.90488 1.54768 1.65409 1.40071 1.41940 1.15485 1.28930 1.34539 1.19679 0.92868 1.13508 1.20230 0.90079 1.26084 1.03255 0.96952 0.95097 1.69683 1.37229 1.26770 1.22515 0.84907 0.77106 0.77511 0.78700 1.19668 1.19564 1.19528 1.23681 0.99482 0.96597 1.04259 1.23222 1.02233 0.97487 0.95062 1.21459 0.95711 1.00635 0.95604 1.22330 0.96487 1.02345 0.99167 1.22730 0.99457 0.94956 0.84609 1.87934 1.20740 1.77050 1.46151 1.22790 0.80867 1.01123 0.95646 0.91114 0.88624 0.93143 0.75251 0.90765 0.93091 0.82798 0.91572 0.88903 0.77095 0.91272 0.88639 0.87338 0.86645 0.87492 0.92688 0.88641 0.89763 0.92113 0.91009 0.88558 0.89377 0.87549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 8.39 71.98 0.60 -1.42 16 2 C -0.11 -1.94 0.63 -52.84 -0.03 -1.97 16 3 C 0.52 13.09 5.91 87.66 0.52 13.61 16 4 O -0.58 -19.03 13.84 -3.02 -0.04 -19.07 16 5 N -0.71 -15.83 5.24 -463.07 -2.43 -18.26 16 6 C 0.17 4.27 5.71 86.38 0.49 4.77 16 7 C 0.02 0.54 1.82 3.53 0.01 0.55 16 8 N -0.63 -19.05 6.38 -474.15 -3.03 -22.08 16 9 C 0.07 2.32 5.94 85.56 0.51 2.83 16 10 C 0.44 20.86 7.81 87.66 0.68 21.55 16 11 O -0.62 -33.74 15.67 -3.09 -0.05 -33.79 16 12 N -0.57 -29.66 5.29 -306.99 -1.62 -31.28 16 13 C -0.33 -18.99 9.68 84.04 0.81 -18.18 16 14 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 15 C -0.01 -0.76 5.50 84.92 0.47 -0.29 16 16 N -0.92 -50.30 13.05 21.66 0.28 -50.02 16 17 Si 0.99 43.03 29.55 68.60 2.03 45.05 16 18 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 19 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 20 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 21 C -0.20 -3.85 10.03 30.62 0.31 -3.54 16 22 C -0.14 -2.46 9.85 30.62 0.30 -2.16 16 23 C -0.10 -1.65 4.46 30.71 0.14 -1.51 16 24 C -0.17 -3.00 5.81 30.68 0.18 -2.82 16 25 C 0.06 0.87 6.84 72.01 0.49 1.37 16 26 O -0.40 -7.42 10.45 -148.98 -1.56 -8.98 16 27 C 0.07 0.99 5.46 72.01 0.39 1.39 16 28 H 0.07 0.99 7.58 -2.39 -0.02 0.97 16 29 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.41 7.72 7.24 -92.71 -0.67 7.05 16 32 H 0.07 1.82 7.90 -2.39 -0.02 1.80 16 33 H 0.05 1.50 6.58 -2.38 -0.02 1.48 16 34 H 0.35 11.06 8.12 -89.69 -0.73 10.33 16 35 H 0.07 2.08 8.09 -2.39 -0.02 2.06 16 36 H 0.09 3.17 6.80 -2.38 -0.02 3.15 16 37 H 0.40 19.71 7.90 -92.71 -0.73 18.98 16 38 H 0.28 14.20 8.31 -92.70 -0.77 13.43 16 39 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.11 1.87 8.06 -2.39 -0.02 1.85 16 41 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.05 1.16 8.02 -2.38 -0.02 1.14 16 44 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.06 1.57 5.82 -2.39 -0.01 1.55 16 47 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 49 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 50 H 0.11 1.22 7.51 -2.39 -0.02 1.20 16 Total: -1.00 -72.62 401.15 -1.70 -74.32 By element: Atomic # 1 Polarization: 51.11 SS G_CDS: -1.15 Total: 49.95 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: 5.87 Total: 14.16 kcal Atomic # 7 Polarization: -114.84 SS G_CDS: -6.79 Total: -121.64 kcal Atomic # 8 Polarization: -60.20 SS G_CDS: -1.65 Total: -61.84 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Total: -72.62 -1.70 -74.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483779780.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.638 kcal (2) G-P(sol) polarization free energy of solvation -72.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds