Wall clock time and date at job start Sat Apr 11 2020 05:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46494 * 109.52167 * 2 1 4 4 C 1.34776 * 120.00109 * 59.87611 * 3 2 1 5 5 O 1.21287 * 119.99662 * 0.28072 * 4 3 2 6 6 C 1.50700 * 120.00063 * 179.97438 * 4 3 2 7 7 H 1.08996 * 110.44013 * 298.90937 * 6 4 3 8 8 C 1.54819 * 110.48636 * 176.22426 * 6 4 3 9 9 C 1.55000 * 102.08956 * 220.44824 * 8 6 4 10 10 O 1.44379 * 103.49245 * 37.02558 * 9 8 6 11 11 C 1.43745 * 106.97577 * 319.93582 * 10 9 8 12 12 C 1.53120 * 109.57589 * 120.16388 * 2 1 3 13 13 C 1.53036 * 109.27533 * 177.59130 * 12 2 1 14 14 N 1.46853 * 109.52358 * 300.81656 * 13 12 2 15 15 C 1.46897 * 111.00242 * 185.84016 * 14 13 12 16 16 C 1.50697 * 109.47249 * 169.43266 * 15 14 13 17 17 O 1.21298 * 119.99898 * 353.78299 * 16 15 14 18 18 N 1.34774 * 120.00171 * 173.78433 * 16 15 14 19 19 C 1.37092 * 120.00289 * 180.02562 * 18 16 15 20 20 H 1.08004 * 120.00014 * 0.02562 * 19 18 16 21 21 C 1.38949 * 120.00404 * 180.02562 * 19 18 16 22 22 N 1.31411 * 119.99780 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00208 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.46931 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.46797 * 119.99597 * 23 21 19 26 26 H 1.48496 * 109.46858 * 239.99860 * 23 21 19 27 27 C 1.46846 * 111.19772 * 61.74084 * 14 13 12 28 28 C 1.53034 * 109.52819 * 298.26355 * 27 14 13 29 29 H 1.08991 * 109.47577 * 59.99699 * 1 2 3 30 30 H 1.09007 * 109.46863 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46842 * 299.99257 * 1 2 3 32 32 H 0.97000 * 119.99954 * 239.87662 * 3 2 1 33 33 H 1.09004 * 110.90518 * 338.64276 * 8 6 4 34 34 H 1.08996 * 110.90829 * 102.24547 * 8 6 4 35 35 H 1.08996 * 110.61749 * 278.52050 * 9 8 6 36 36 H 1.08997 * 110.74918 * 155.59080 * 9 8 6 37 37 H 1.08998 * 109.88007 * 267.09828 * 11 10 9 38 38 H 1.08996 * 110.00324 * 146.00624 * 11 10 9 39 39 H 1.08993 * 109.50016 * 297.52820 * 12 2 1 40 40 H 1.08996 * 109.50500 * 57.64923 * 12 2 1 41 41 H 1.08999 * 109.46492 * 180.80503 * 13 12 2 42 42 H 1.08999 * 109.46068 * 60.82675 * 13 12 2 43 43 H 1.08998 * 109.47131 * 289.43890 * 15 14 13 44 44 H 1.09008 * 109.46672 * 49.43503 * 15 14 13 45 45 H 0.97001 * 120.00041 * 0.02562 * 18 16 15 46 46 H 0.96998 * 119.99740 * 180.02562 * 22 21 19 47 47 H 1.08997 * 109.46157 * 178.24200 * 27 14 13 48 48 H 1.09009 * 109.45015 * 58.27136 * 27 14 13 49 49 H 1.09002 * 109.50007 * 299.23741 * 28 27 14 50 50 H 1.08996 * 109.50734 * 179.11744 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3807 0.0000 4 6 1.6927 2.2116 1.0095 5 8 0.9974 1.8147 1.9206 6 6 2.1967 3.6318 1.0098 7 1 3.2863 3.6490 1.0318 8 6 1.6154 4.4129 2.2135 9 6 1.2981 5.7926 1.5825 10 8 0.8346 5.4582 0.2567 11 6 1.6699 4.3913 -0.2233 12 6 2.0431 -0.7249 1.2473 13 6 3.5722 -0.7736 1.2103 14 7 4.0116 -1.4767 -0.0018 15 6 5.4686 -1.6642 -0.0028 16 6 5.8533 -2.6046 -1.1157 17 8 4.9925 -3.1604 -1.7648 18 7 7.1538 -2.8281 -1.3898 19 6 7.5039 -3.6831 -2.4026 20 1 6.7374 -4.1774 -2.9811 21 6 8.8447 -3.9140 -2.6848 22 7 9.7773 -3.3122 -1.9812 23 14 9.3216 -5.0786 -4.0653 24 1 8.0943 -5.6230 -4.6998 25 1 10.1193 -4.3435 -5.0795 26 1 10.1302 -6.1952 -3.5137 27 6 3.5708 -0.7731 -1.2131 28 6 2.0417 -0.7243 -1.2483 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 2.5790 1.6970 -0.7266 33 1 0.7076 3.9368 2.5843 34 1 2.3549 4.5094 3.0084 35 1 2.1970 6.4070 1.5313 36 1 0.5167 6.3039 2.1447 37 1 2.5053 4.8014 -0.7907 38 1 1.0891 3.7176 -0.8532 39 1 1.7176 -0.1894 2.1391 40 1 1.6470 -1.7402 1.2669 41 1 3.9403 -1.3017 2.0899 42 1 3.9678 0.2421 1.2045 43 1 5.9586 -0.7024 -0.1540 44 1 5.7813 -2.0851 0.9529 45 1 7.8422 -2.3839 -0.8704 46 1 10.7132 -3.4731 -2.1785 47 1 3.9378 -1.3008 -2.0934 48 1 3.9666 0.2426 -1.2072 49 1 1.6455 -1.7396 -1.2680 50 1 1.7151 -0.1883 -2.1395 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483962977.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:01 Heat of formation + Delta-G solvation = -136.999338 kcal Electronic energy + Delta-G solvation = -30800.341777 eV Core-core repulsion = 26633.324349 eV Total energy + Delta-G solvation = -4167.017428 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.92680 -40.61989 -39.86708 -38.70504 -36.38329 -35.72688 -33.80357 -33.25801 -32.53852 -31.87504 -30.37689 -29.93331 -27.67461 -25.82959 -24.75257 -24.29138 -23.49101 -22.64212 -21.20670 -20.97917 -20.10875 -19.85149 -18.56294 -17.79021 -17.57173 -16.94801 -16.88297 -16.59693 -16.44700 -16.04191 -15.85269 -15.83369 -15.46157 -15.27197 -15.08105 -14.91728 -14.64045 -14.07100 -13.91070 -13.83867 -13.46752 -13.44001 -13.30313 -13.12952 -12.89621 -12.84108 -12.62215 -12.45299 -12.39380 -12.38648 -12.23960 -12.14034 -12.10358 -11.88048 -11.64723 -11.53741 -11.38773 -10.85025 -10.42687 -10.23556 -10.05810 -9.97774 -9.14238 -8.45376 -5.93430 1.36916 1.42350 1.56114 1.61034 2.07744 2.12658 2.29034 2.76894 2.95589 3.21856 3.34528 3.40160 3.59920 3.78096 3.78555 3.92246 3.94013 4.14878 4.19081 4.25042 4.30758 4.33040 4.36481 4.45691 4.49149 4.53845 4.60173 4.68560 4.72184 4.74686 4.80436 4.83690 4.84275 4.91735 4.95090 5.03085 5.08053 5.15985 5.18989 5.26300 5.31268 5.42774 5.61447 5.84367 5.91730 6.12043 6.25419 6.57445 6.62737 7.15237 7.25013 7.59093 8.14920 8.72339 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019055 B = 0.002318 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.068472 B =12076.408432 C =12644.420622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.181 3.819 3 N -0.711 5.711 4 C 0.524 3.476 5 O -0.562 6.562 6 C -0.145 4.145 7 H 0.133 0.867 8 C -0.138 4.138 9 C 0.045 3.955 10 O -0.402 6.402 11 C 0.056 3.944 12 C -0.118 4.118 13 C 0.065 3.935 14 N -0.531 5.531 15 C 0.059 3.941 16 C 0.443 3.557 17 O -0.611 6.611 18 N -0.576 5.576 19 C -0.328 4.328 20 H 0.079 0.921 21 C -0.014 4.014 22 N -0.922 5.922 23 Si 0.991 3.009 24 H -0.273 1.273 25 H -0.271 1.271 26 H -0.273 1.273 27 C 0.059 3.941 28 C -0.105 4.105 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.408 0.592 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.081 0.919 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.038 0.962 43 H 0.066 0.934 44 H 0.105 0.895 45 H 0.395 0.605 46 H 0.277 0.723 47 H 0.060 0.940 48 H 0.041 0.959 49 H 0.075 0.925 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.175 18.143 7.217 23.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.095 3.905 3 N -0.363 5.363 4 C 0.311 3.689 5 O -0.441 6.441 6 C -0.166 4.166 7 H 0.151 0.849 8 C -0.176 4.176 9 C -0.031 4.031 10 O -0.321 6.321 11 C -0.021 4.021 12 C -0.157 4.157 13 C -0.062 4.062 14 N -0.256 5.256 15 C -0.073 4.073 16 C 0.231 3.769 17 O -0.497 6.497 18 N -0.214 5.214 19 C -0.457 4.457 20 H 0.097 0.903 21 C -0.214 4.214 22 N -0.563 5.563 23 Si 0.815 3.185 24 H -0.198 1.198 25 H -0.196 1.196 26 H -0.198 1.198 27 C -0.069 4.069 28 C -0.143 4.143 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.245 0.755 33 H 0.091 0.909 34 H 0.118 0.882 35 H 0.100 0.900 36 H 0.120 0.880 37 H 0.109 0.891 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.056 0.944 43 H 0.084 0.916 44 H 0.123 0.877 45 H 0.229 0.771 46 H 0.086 0.914 47 H 0.078 0.922 48 H 0.059 0.941 49 H 0.093 0.907 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.437 17.104 7.295 23.541 hybrid contribution 1.666 0.074 -0.567 1.762 sum -12.770 17.178 6.728 22.438 Atomic orbital electron populations 1.22105 0.93766 1.02749 1.02631 1.20297 0.94103 0.80718 0.95363 1.46141 1.53215 1.11474 1.25483 1.20612 0.79346 0.87623 0.81279 1.90632 1.39077 1.77485 1.36901 1.22827 1.04012 0.91589 0.98169 0.84877 1.23078 1.02613 0.94881 0.97055 1.23766 1.01062 0.96129 0.82177 1.88869 1.57003 1.53667 1.32589 1.23229 0.95430 0.88782 0.94620 1.21914 0.94376 1.00813 0.98598 1.22039 0.95914 0.96291 0.91949 1.61452 1.10458 1.50822 1.02901 1.21704 0.89475 0.97971 0.98110 1.20736 0.82375 0.86279 0.87539 1.90483 1.49913 1.54669 1.54648 1.41956 1.06177 1.41436 1.31824 1.19665 0.92351 1.22349 1.11362 0.90328 1.26009 0.94901 0.99580 1.00880 1.69677 1.01200 1.43982 1.41460 0.84899 0.78095 0.77842 0.77688 1.19795 1.19604 1.19816 1.22071 0.96043 0.95696 0.93067 1.21787 0.94135 1.01428 0.96995 0.91865 0.91347 0.92003 0.75508 0.90860 0.88228 0.90043 0.87959 0.89149 0.89881 0.90088 0.91127 0.90643 0.94402 0.91600 0.87718 0.77132 0.91397 0.92171 0.94115 0.90662 0.89152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.16 8.41 71.98 0.61 -2.56 16 2 C 0.18 3.76 0.66 3.69 0.00 3.76 16 3 N -0.71 -12.07 3.99 -422.55 -1.69 -13.76 16 4 C 0.52 9.86 6.40 87.66 0.56 10.42 16 5 O -0.56 -14.41 11.68 -3.05 -0.04 -14.44 16 6 C -0.14 -1.89 3.44 -10.54 -0.04 -1.93 16 7 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 8 C -0.14 -1.88 6.50 31.90 0.21 -1.67 16 9 C 0.04 0.54 7.72 72.67 0.56 1.10 16 10 O -0.40 -7.12 11.52 -148.98 -1.72 -8.84 16 11 C 0.06 0.73 7.30 72.36 0.53 1.26 16 12 C -0.12 -2.82 4.72 30.65 0.14 -2.67 16 13 C 0.07 1.62 5.31 86.32 0.46 2.08 16 14 N -0.53 -16.43 4.35 -900.92 -3.92 -20.34 16 15 C 0.06 1.98 5.45 85.56 0.47 2.44 16 16 C 0.44 20.58 7.31 87.66 0.64 21.22 16 17 O -0.61 -32.89 14.28 -3.09 -0.04 -32.93 16 18 N -0.58 -29.04 5.29 -306.98 -1.62 -30.66 16 19 C -0.33 -18.33 9.68 84.04 0.81 -17.52 16 20 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 21 C -0.01 -0.75 5.50 84.93 0.47 -0.29 16 22 N -0.92 -49.26 13.05 21.66 0.28 -48.98 16 23 Si 0.99 42.55 29.55 68.60 2.03 44.58 16 24 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 25 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 26 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 27 C 0.06 1.68 4.96 86.32 0.43 2.11 16 28 C -0.11 -2.43 4.93 30.65 0.15 -2.27 16 29 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 31 H 0.06 1.48 6.17 -2.39 -0.01 1.47 16 32 H 0.41 5.36 7.45 -92.71 -0.69 4.67 16 33 H 0.07 1.38 6.93 -2.38 -0.02 1.37 16 34 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.08 1.12 7.59 -2.39 -0.02 1.10 16 39 H 0.08 2.06 6.13 -2.39 -0.01 2.05 16 40 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.08 1.82 8.01 -2.39 -0.02 1.80 16 42 H 0.04 0.85 7.68 -2.39 -0.02 0.84 16 43 H 0.07 1.95 8.12 -2.39 -0.02 1.93 16 44 H 0.10 3.21 7.98 -2.38 -0.02 3.19 16 45 H 0.40 18.96 7.90 -92.71 -0.73 18.23 16 46 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 47 H 0.06 2.24 6.05 -2.39 -0.01 2.23 16 48 H 0.04 0.97 7.01 -2.38 -0.02 0.95 16 49 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 50 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -70.78 387.23 -1.17 -71.95 By element: Atomic # 1 Polarization: 38.40 SS G_CDS: -0.46 Total: 37.94 kcal Atomic # 6 Polarization: 9.47 SS G_CDS: 6.00 Total: 15.47 kcal Atomic # 7 Polarization: -106.79 SS G_CDS: -6.94 Total: -113.74 kcal Atomic # 8 Polarization: -54.41 SS G_CDS: -1.80 Total: -56.21 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -70.78 -1.17 -71.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483962977.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.047 kcal (2) G-P(sol) polarization free energy of solvation -70.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds