Wall clock time and date at job start Sat Apr 11 2020 05:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46507 * 109.52037 * 2 1 4 4 C 1.34775 * 119.99940 * 59.87544 * 3 2 1 5 5 O 1.21290 * 120.00094 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00062 * 179.97438 * 4 3 2 7 7 H 1.09006 * 110.98114 * 62.74613 * 6 4 3 8 8 C 1.55449 * 111.18423 * 186.89767 * 6 4 3 9 9 C 1.54378 * 102.18413 * 152.00936 * 8 6 4 10 10 O 1.43236 * 107.66685 * 338.74684 * 9 8 6 11 11 C 1.43644 * 109.97222 * 358.23711 * 10 9 8 12 12 C 1.53123 * 109.57549 * 120.15945 * 2 1 3 13 13 C 1.53036 * 109.27754 * 177.59124 * 12 2 1 14 14 N 1.46851 * 109.52503 * 300.82261 * 13 12 2 15 15 C 1.46894 * 111.00196 * 185.83888 * 14 13 12 16 16 C 1.50700 * 109.47034 * 169.43003 * 15 14 13 17 17 O 1.21292 * 120.00436 * 353.78675 * 16 15 14 18 18 N 1.34775 * 119.99906 * 173.78089 * 16 15 14 19 19 C 1.37095 * 120.00098 * 180.02562 * 18 16 15 20 20 H 1.08003 * 120.00260 * 0.02562 * 19 18 16 21 21 C 1.38947 * 120.00266 * 180.02562 * 19 18 16 22 22 N 1.31418 * 120.00232 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00343 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47155 * 60.00019 * 23 21 19 25 25 H 1.48498 * 109.47016 * 180.02562 * 23 21 19 26 26 H 1.48509 * 109.46903 * 299.99986 * 23 21 19 27 27 C 1.46852 * 111.19572 * 61.74070 * 14 13 12 28 28 C 1.53041 * 109.52337 * 298.26038 * 27 14 13 29 29 H 1.08994 * 109.47038 * 59.99667 * 1 2 3 30 30 H 1.08998 * 109.47082 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46833 * 299.99652 * 1 2 3 32 32 H 0.96994 * 119.99740 * 239.87540 * 3 2 1 33 33 H 1.09007 * 110.83546 * 33.86475 * 8 6 4 34 34 H 1.09000 * 110.92647 * 270.20052 * 8 6 4 35 35 H 1.08995 * 109.83346 * 219.18013 * 9 8 6 36 36 H 1.09008 * 109.82551 * 98.30072 * 9 8 6 37 37 H 1.09002 * 110.30777 * 143.34289 * 11 10 9 38 38 H 1.09002 * 110.31069 * 265.51679 * 11 10 9 39 39 H 1.09000 * 109.50252 * 297.53146 * 12 2 1 40 40 H 1.08991 * 109.50171 * 57.65146 * 12 2 1 41 41 H 1.08989 * 109.46451 * 180.80405 * 13 12 2 42 42 H 1.09007 * 109.46167 * 60.83576 * 13 12 2 43 43 H 1.09001 * 109.47281 * 289.43328 * 15 14 13 44 44 H 1.09000 * 109.46863 * 49.43058 * 15 14 13 45 45 H 0.96997 * 119.99940 * 0.02562 * 18 16 15 46 46 H 0.96996 * 120.00341 * 179.97438 * 22 21 19 47 47 H 1.09003 * 109.46147 * 178.24419 * 27 14 13 48 48 H 1.08999 * 109.46663 * 58.27842 * 27 14 13 49 49 H 1.09004 * 109.50239 * 299.23742 * 28 27 14 50 50 H 1.08999 * 109.53202 * 179.14670 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0195 1.3809 0.0000 4 6 1.6926 2.2117 1.0096 5 8 0.9935 1.8162 1.9183 6 6 2.1966 3.6320 1.0099 7 1 1.8103 4.1834 0.1526 8 6 1.8454 4.3524 2.3418 9 6 2.9797 5.3931 2.4583 10 8 4.0695 4.9410 1.6462 11 6 3.7449 3.6751 1.0500 12 6 2.0430 -0.7248 1.2474 13 6 3.5722 -0.7735 1.2104 14 7 4.0116 -1.4766 -0.0017 15 6 5.4686 -1.6641 -0.0025 16 6 5.8533 -2.6046 -1.1154 17 8 4.9926 -3.1604 -1.7646 18 7 7.1539 -2.8280 -1.3895 19 6 7.5040 -3.6831 -2.4022 20 1 6.7376 -4.1774 -2.9808 21 6 8.8447 -3.9138 -2.6845 22 7 9.7774 -3.3128 -1.9802 23 14 9.3218 -5.0785 -4.0649 24 1 8.7659 -4.5790 -5.3481 25 1 10.8018 -5.1520 -4.1612 26 1 8.7768 -6.4307 -3.7822 27 6 3.5709 -0.7729 -1.2129 28 6 2.0416 -0.7242 -1.2482 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 2.5789 1.6971 -0.7266 33 1 1.8719 3.6545 3.1788 34 1 0.8743 4.8428 2.2749 35 1 3.3012 5.4751 3.4965 36 1 2.6302 6.3622 2.1019 37 1 4.1513 3.6172 0.0402 38 1 4.1304 2.8590 1.6613 39 1 1.7175 -0.1893 2.1392 40 1 1.6470 -1.7401 1.2670 41 1 3.9401 -1.3015 2.0900 42 1 3.9679 0.2422 1.2047 43 1 5.9586 -0.7023 -0.1538 44 1 5.7813 -2.0849 0.9532 45 1 7.8422 -2.3837 -0.8701 46 1 10.7134 -3.4742 -2.1770 47 1 3.9379 -1.3006 -2.0933 48 1 3.9666 0.2427 -1.2073 49 1 1.6456 -1.7396 -1.2679 50 1 1.7146 -0.1888 -2.1395 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483962982.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:04 Heat of formation + Delta-G solvation = -137.410104 kcal Electronic energy + Delta-G solvation = -30986.454643 eV Core-core repulsion = 26819.419402 eV Total energy + Delta-G solvation = -4167.035240 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.90935 -40.60525 -39.89844 -38.75531 -36.38000 -35.72116 -33.80905 -33.25637 -32.56097 -31.87597 -30.45149 -29.96478 -27.66914 -25.83564 -24.81296 -24.29099 -23.34083 -22.64797 -21.29062 -20.97715 -20.12614 -19.84716 -18.70863 -17.79612 -17.65580 -16.93374 -16.69866 -16.55550 -16.38676 -16.18733 -15.95688 -15.62010 -15.47802 -15.22372 -15.08471 -14.77881 -14.48442 -14.46588 -14.07322 -13.90856 -13.45563 -13.42568 -13.39060 -13.13417 -13.00043 -12.82471 -12.65875 -12.47165 -12.41608 -12.29708 -12.25480 -12.14587 -12.10886 -11.92779 -11.64152 -11.52540 -11.36402 -10.60869 -10.53643 -10.24258 -10.06616 -9.97722 -9.14382 -8.44626 -5.93072 1.40410 1.42305 1.52932 1.57813 2.08120 2.09117 2.29298 2.76418 2.87232 3.22392 3.26257 3.40349 3.61272 3.77449 3.81695 3.86189 3.93650 4.12836 4.15723 4.19168 4.23560 4.29050 4.33245 4.45766 4.50060 4.53581 4.59450 4.65981 4.74000 4.74789 4.81419 4.84385 4.85054 4.93318 4.95428 5.03629 5.08447 5.12585 5.18864 5.26724 5.32966 5.42463 5.60909 5.91599 5.92657 6.11848 6.25354 6.56000 6.62989 7.15207 7.22801 7.59281 8.15000 8.72632 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015634 B = 0.002587 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.496447 B =10820.898877 C =12014.816076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.181 3.819 3 N -0.710 5.710 4 C 0.530 3.470 5 O -0.560 6.560 6 C -0.142 4.142 7 H 0.136 0.864 8 C -0.131 4.131 9 C 0.046 3.954 10 O -0.401 6.401 11 C 0.063 3.937 12 C -0.119 4.119 13 C 0.064 3.936 14 N -0.529 5.529 15 C 0.058 3.942 16 C 0.444 3.556 17 O -0.611 6.611 18 N -0.576 5.576 19 C -0.330 4.330 20 H 0.080 0.920 21 C -0.014 4.014 22 N -0.922 5.922 23 Si 0.991 3.009 24 H -0.271 1.271 25 H -0.272 1.272 26 H -0.273 1.273 27 C 0.058 3.942 28 C -0.105 4.105 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.408 0.592 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.054 0.946 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.036 0.964 43 H 0.065 0.935 44 H 0.104 0.896 45 H 0.395 0.605 46 H 0.277 0.723 47 H 0.060 0.940 48 H 0.040 0.960 49 H 0.075 0.925 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.261 17.563 6.828 24.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.095 3.905 3 N -0.362 5.362 4 C 0.316 3.684 5 O -0.439 6.439 6 C -0.163 4.163 7 H 0.153 0.847 8 C -0.169 4.169 9 C -0.030 4.030 10 O -0.321 6.321 11 C -0.013 4.013 12 C -0.157 4.157 13 C -0.063 4.063 14 N -0.255 5.255 15 C -0.073 4.073 16 C 0.231 3.769 17 O -0.497 6.497 18 N -0.214 5.214 19 C -0.460 4.460 20 H 0.097 0.903 21 C -0.213 4.213 22 N -0.563 5.563 23 Si 0.815 3.185 24 H -0.196 1.196 25 H -0.196 1.196 26 H -0.198 1.198 27 C -0.070 4.070 28 C -0.143 4.143 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.245 0.755 33 H 0.092 0.908 34 H 0.119 0.881 35 H 0.092 0.908 36 H 0.107 0.893 37 H 0.125 0.875 38 H 0.073 0.927 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.054 0.946 43 H 0.083 0.917 44 H 0.122 0.878 45 H 0.228 0.772 46 H 0.086 0.914 47 H 0.078 0.922 48 H 0.058 0.942 49 H 0.094 0.906 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -16.152 16.542 7.004 24.158 hybrid contribution 1.367 0.116 -0.590 1.493 sum -14.785 16.658 6.414 23.178 Atomic orbital electron populations 1.22101 0.93465 1.02817 1.02798 1.20315 0.94318 0.80607 0.95276 1.46162 1.53077 1.11518 1.25437 1.20367 0.79550 0.87142 0.81307 1.90650 1.38952 1.77436 1.36813 1.23101 0.97363 0.93441 1.02441 0.84662 1.22988 1.00268 0.97583 0.96040 1.23322 0.85821 0.98070 0.95758 1.88417 1.41163 1.36790 1.65732 1.23364 0.92002 0.86280 0.99684 1.21919 0.94220 1.00912 0.98660 1.22049 0.96070 0.96214 0.91975 1.61461 1.10372 1.50755 1.02887 1.21705 0.89550 0.97955 0.98114 1.20709 0.82373 0.86281 0.87533 1.90476 1.49893 1.54673 1.54634 1.41949 1.06182 1.41413 1.31811 1.19606 0.92377 1.22500 1.11477 0.90250 1.26014 0.94882 0.99548 1.00868 1.69669 1.01221 1.43970 1.41470 0.85018 0.77306 0.78217 0.77991 1.19582 1.19650 1.19826 1.22084 0.96167 0.95674 0.93047 1.21788 0.94007 1.01486 0.97047 0.91661 0.91397 0.91780 0.75511 0.90793 0.88119 0.90783 0.89324 0.87517 0.92732 0.90079 0.91027 0.90760 0.94563 0.91706 0.87811 0.77167 0.91381 0.92168 0.94177 0.90608 0.89055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 8.41 71.98 0.61 -2.32 16 2 C 0.18 3.61 0.66 3.68 0.00 3.61 16 3 N -0.71 -11.56 4.11 -422.55 -1.74 -13.30 16 4 C 0.53 9.43 6.58 87.66 0.58 10.01 16 5 O -0.56 -13.54 12.01 -3.06 -0.04 -13.57 16 6 C -0.14 -1.86 3.48 -10.03 -0.03 -1.89 16 7 H 0.14 1.19 8.14 -2.38 -0.02 1.17 16 8 C -0.13 -1.74 6.14 31.90 0.20 -1.54 16 9 C 0.05 0.61 7.79 72.45 0.56 1.17 16 10 O -0.40 -7.40 11.36 -148.98 -1.69 -9.09 16 11 C 0.06 0.94 7.21 72.65 0.52 1.47 16 12 C -0.12 -2.77 4.72 30.65 0.14 -2.63 16 13 C 0.06 1.60 5.31 86.32 0.46 2.06 16 14 N -0.53 -16.43 4.35 -900.91 -3.92 -20.34 16 15 C 0.06 1.98 5.45 85.56 0.47 2.45 16 16 C 0.44 20.71 7.31 87.66 0.64 21.35 16 17 O -0.61 -32.88 14.28 -3.07 -0.04 -32.92 16 18 N -0.58 -29.24 5.29 -306.99 -1.62 -30.86 16 19 C -0.33 -18.54 9.68 84.04 0.81 -17.73 16 20 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 21 C -0.01 -0.72 5.50 84.92 0.47 -0.26 16 22 N -0.92 -49.68 13.05 21.66 0.28 -49.40 16 23 Si 0.99 42.70 29.55 68.60 2.03 44.73 16 24 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 25 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 26 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 27 C 0.06 1.65 4.96 86.33 0.43 2.08 16 28 C -0.11 -2.36 4.93 30.64 0.15 -2.21 16 29 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.06 1.42 6.16 -2.38 -0.01 1.40 16 32 H 0.41 5.20 7.47 -92.71 -0.69 4.51 16 33 H 0.07 1.26 7.48 -2.38 -0.02 1.24 16 34 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 37 H 0.11 1.24 8.14 -2.39 -0.02 1.23 16 38 H 0.05 0.93 8.02 -2.39 -0.02 0.91 16 39 H 0.08 2.02 6.14 -2.39 -0.01 2.01 16 40 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.07 1.82 8.01 -2.39 -0.02 1.81 16 42 H 0.04 0.84 7.69 -2.38 -0.02 0.82 16 43 H 0.07 1.97 8.12 -2.39 -0.02 1.95 16 44 H 0.10 3.24 7.98 -2.39 -0.02 3.22 16 45 H 0.39 19.17 7.90 -92.71 -0.73 18.43 16 46 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 47 H 0.06 2.24 6.05 -2.39 -0.01 2.22 16 48 H 0.04 0.96 7.01 -2.39 -0.02 0.94 16 49 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 50 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -69.76 388.38 -1.20 -70.95 By element: Atomic # 1 Polarization: 38.63 SS G_CDS: -0.46 Total: 38.17 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: 6.00 Total: 15.63 kcal Atomic # 7 Polarization: -106.90 SS G_CDS: -7.00 Total: -113.90 kcal Atomic # 8 Polarization: -53.81 SS G_CDS: -1.77 Total: -55.58 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -69.76 -1.20 -70.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483962982.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.455 kcal (2) G-P(sol) polarization free energy of solvation -69.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds