Wall clock time and date at job start Sat Apr 11 2020 05:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.44987 * 2 1 4 4 N 1.46501 * 109.46925 * 60.03547 * 3 2 1 5 5 C 1.34783 * 119.99904 * 179.97438 * 4 3 2 6 6 O 1.21277 * 120.00000 * 0.02562 * 5 4 3 7 7 C 1.50696 * 119.99824 * 179.97438 * 5 4 3 8 8 N 1.46505 * 109.46920 * 179.97438 * 7 5 4 9 9 C 1.46086 * 118.72926 * 269.73789 * 8 7 5 10 10 C 1.53212 * 109.82650 * 161.46809 * 9 8 7 11 11 O 1.43248 * 108.51299 * 49.53388 * 10 9 8 12 12 C 1.42963 * 112.98777 * 291.46149 * 11 10 9 13 13 C 1.33876 * 118.72597 * 90.00233 * 8 7 5 14 14 O 1.21277 * 118.83655 * 1.88069 * 13 8 7 15 15 C 1.53035 * 109.46011 * 119.96677 * 2 1 3 16 16 C 1.53192 * 109.31259 * 58.65443 * 15 2 1 17 17 N 1.46922 * 108.77816 * 54.63346 * 16 15 2 18 18 C 1.36941 * 120.63017 * 126.41183 * 17 16 15 19 19 H 1.07997 * 119.99820 * 207.66659 * 18 17 16 20 20 C 1.38810 * 120.00020 * 27.66657 * 18 17 16 21 21 N 1.31615 * 120.00013 * 17.36752 * 20 18 17 22 22 Si 1.86795 * 119.99814 * 197.36706 * 20 18 17 23 23 H 1.48499 * 109.47435 * 90.00376 * 22 20 18 24 24 H 1.48500 * 109.47090 * 210.00129 * 22 20 18 25 25 H 1.48495 * 109.47535 * 329.99678 * 22 20 18 26 26 C 1.46927 * 118.73888 * 306.39278 * 17 16 15 27 27 C 1.53035 * 109.45691 * 240.03244 * 2 1 3 28 28 H 1.08994 * 109.46956 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46661 * 299.96361 * 1 2 3 30 30 H 1.08999 * 109.47328 * 59.96212 * 1 2 3 31 31 H 1.08994 * 109.47222 * 180.02562 * 3 2 1 32 32 H 1.08995 * 109.46981 * 300.03991 * 3 2 1 33 33 H 0.97001 * 120.00113 * 359.97438 * 4 3 2 34 34 H 1.08999 * 109.47748 * 300.00191 * 7 5 4 35 35 H 1.08998 * 109.47321 * 60.00515 * 7 5 4 36 36 H 1.09006 * 109.39486 * 281.77635 * 9 8 7 37 37 H 1.08999 * 109.40121 * 41.49802 * 9 8 7 38 38 H 1.08999 * 109.82632 * 289.74670 * 10 9 8 39 39 H 1.08995 * 109.67445 * 169.23524 * 10 9 8 40 40 H 1.08993 * 109.41581 * 289.49464 * 12 11 10 41 41 H 1.09002 * 109.35864 * 169.66303 * 12 11 10 42 42 H 1.08995 * 109.49922 * 178.60599 * 15 2 1 43 43 H 1.09007 * 109.49750 * 298.70304 * 15 2 1 44 44 H 1.09002 * 109.58798 * 294.84684 * 16 15 2 45 45 H 1.09000 * 109.58774 * 174.42409 * 16 15 2 46 46 H 0.97006 * 120.00037 * 179.97438 * 21 20 18 47 47 H 1.08997 * 109.58787 * 293.81972 * 26 17 16 48 48 H 1.09001 * 109.70419 * 173.46128 * 26 17 16 49 49 H 1.09000 * 109.49541 * 61.30107 * 27 2 1 50 50 H 1.09002 * 109.49570 * 181.39128 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0395 1.4427 0.0000 4 7 1.5516 2.1328 1.1966 5 6 1.8773 3.4232 1.4103 6 8 2.5738 4.0130 0.6117 7 6 1.3749 4.1332 2.6409 8 7 1.8638 5.5143 2.6416 9 6 3.1410 5.8067 3.2876 10 6 3.6783 7.1529 2.7912 11 8 2.6318 8.1258 2.8933 12 6 1.5630 7.8948 1.9723 13 6 1.1203 6.4604 2.0548 14 8 0.0517 6.1494 1.5730 15 6 2.0399 -0.7207 1.2500 16 6 1.4996 -2.1541 1.2642 17 7 1.8625 -2.8089 0.0000 18 6 2.5261 -4.0068 0.0000 19 1 3.1677 -4.2686 -0.8283 20 6 2.3740 -4.8844 1.0646 21 7 1.3608 -4.7448 1.8930 22 14 3.6073 -6.2636 1.3214 23 1 4.7090 -5.7862 2.1952 24 1 2.9311 -7.4190 1.9642 25 1 4.1622 -6.6823 0.0093 26 6 1.4995 -2.1542 -1.2643 27 6 2.0398 -0.7208 -1.2500 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5133 0.8903 30 1 -0.3634 0.5144 -0.8896 31 1 3.1295 1.4431 -0.0005 32 1 1.6754 1.9565 -0.8896 33 1 0.9942 1.6612 1.8352 34 1 0.2849 4.1333 2.6409 35 1 1.7382 3.6192 3.5307 36 1 2.9998 5.8455 4.3678 37 1 3.8573 5.0215 3.0456 38 1 3.9949 7.0641 1.7520 39 1 4.5241 7.4598 3.4063 40 1 1.9040 8.1112 0.9599 41 1 0.7255 8.5472 2.2198 42 1 3.1296 -0.7428 1.2383 43 1 1.6958 -0.1934 2.1398 44 1 0.4147 -2.1347 1.3673 45 1 1.9382 -2.7018 2.0984 46 1 1.2543 -5.3584 2.6368 47 1 0.4146 -2.1347 -1.3674 48 1 1.9362 -2.7010 -2.1000 49 1 1.6958 -0.1934 -2.1398 50 1 3.1296 -0.7428 -1.2383 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484136668.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:13 Heat of formation + Delta-G solvation = -86.745636 kcal Electronic energy + Delta-G solvation = -30621.475997 eV Core-core repulsion = 26456.637732 eV Total energy + Delta-G solvation = -4164.838264 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.16153 -39.76002 -38.47685 -37.96834 -35.70465 -35.01583 -33.20292 -31.11816 -30.68460 -29.96803 -29.54375 -27.26532 -27.02852 -25.80475 -24.31958 -23.82320 -22.37550 -20.98980 -20.52269 -19.44998 -18.13422 -18.08334 -17.67294 -17.35200 -16.46322 -16.19631 -15.87105 -15.75632 -15.23379 -14.99896 -14.78048 -14.51950 -14.17804 -14.00085 -13.82419 -13.59146 -13.53641 -13.48435 -13.37612 -12.84327 -12.63844 -12.42181 -12.16550 -11.90214 -11.72193 -11.50692 -11.31248 -11.20837 -10.95793 -10.78914 -10.74236 -10.56574 -10.28041 -10.21399 -10.18379 -9.83360 -9.81636 -9.56525 -9.44729 -9.07027 -9.00371 -8.47178 -6.68188 -5.81481 -3.22871 2.09423 2.36971 2.55465 3.21373 3.34296 3.35546 3.42895 3.43806 3.90992 4.29789 4.47530 4.54502 4.65656 4.69260 4.78240 4.93120 4.98761 5.03972 5.08811 5.14615 5.15616 5.20967 5.28412 5.38115 5.49471 5.73811 5.75696 5.83742 5.92150 6.06872 6.08813 6.11949 6.28775 6.30633 6.40342 6.46671 6.52041 6.58155 6.67037 6.75966 6.85053 6.92680 6.97680 7.33064 7.46281 7.63622 7.68351 7.77755 8.15782 8.42830 9.19530 9.83065 10.39595 11.26944 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023458 B = 0.002202 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.357541 B =12714.366927 C =13153.554914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.064 4.064 3 C 0.132 3.868 4 N -0.719 5.719 5 C 0.496 3.504 6 O -0.541 6.541 7 C 0.088 3.912 8 N -0.586 5.586 9 C 0.082 3.918 10 C 0.044 3.956 11 O -0.372 6.372 12 C 0.053 3.947 13 C 0.494 3.506 14 O -0.538 6.538 15 C -0.129 4.129 16 C 0.171 3.829 17 N -0.591 5.591 18 C -0.250 4.250 19 H 0.065 0.935 20 C 0.001 3.999 21 N -0.903 5.903 22 Si 0.901 3.099 23 H -0.288 1.288 24 H -0.292 1.292 25 H -0.279 1.279 26 C 0.146 3.854 27 C -0.120 4.120 28 H 0.074 0.926 29 H 0.044 0.956 30 H 0.047 0.953 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.402 0.598 34 H 0.118 0.882 35 H 0.110 0.890 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.117 0.883 40 H 0.093 0.907 41 H 0.131 0.869 42 H 0.055 0.945 43 H 0.044 0.956 44 H 0.021 0.979 45 H 0.086 0.914 46 H 0.253 0.747 47 H 0.021 0.979 48 H 0.052 0.948 49 H 0.052 0.948 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.896 22.588 4.053 23.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.065 4.065 3 C 0.008 3.992 4 N -0.371 5.371 5 C 0.281 3.719 6 O -0.418 6.418 7 C -0.039 4.039 8 N -0.319 5.319 9 C -0.041 4.041 10 C -0.033 4.033 11 O -0.290 6.290 12 C -0.027 4.027 13 C 0.281 3.719 14 O -0.416 6.416 15 C -0.168 4.168 16 C 0.045 3.955 17 N -0.314 5.314 18 C -0.380 4.380 19 H 0.083 0.917 20 C -0.197 4.197 21 N -0.548 5.548 22 Si 0.732 3.268 23 H -0.215 1.215 24 H -0.218 1.218 25 H -0.205 1.205 26 C 0.019 3.981 27 C -0.159 4.159 28 H 0.093 0.907 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.238 0.762 34 H 0.136 0.864 35 H 0.128 0.872 36 H 0.097 0.903 37 H 0.107 0.893 38 H 0.087 0.913 39 H 0.135 0.865 40 H 0.111 0.889 41 H 0.149 0.851 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.039 0.961 45 H 0.104 0.896 46 H 0.063 0.937 47 H 0.039 0.961 48 H 0.071 0.929 49 H 0.070 0.930 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.808 22.901 3.482 23.234 hybrid contribution 0.454 -1.323 0.332 1.438 sum 2.262 21.577 3.814 22.028 Atomic orbital electron populations 1.21940 0.94642 1.03007 1.00326 1.20701 0.95817 0.91976 0.97957 1.21531 0.98826 0.92280 0.86554 1.46074 1.53366 1.11575 1.26112 1.21002 0.80723 0.82167 0.88029 1.90674 1.38177 1.66050 1.46925 1.21393 1.02797 0.82455 0.97230 1.47016 1.21735 1.06874 1.56306 1.22236 0.85095 0.98903 0.97823 1.23055 0.90638 0.86934 1.02686 1.88179 1.30833 1.50831 1.59131 1.22821 0.91784 0.92243 0.95825 1.20998 0.84537 0.88852 0.77467 1.90753 1.22400 1.82182 1.46223 1.22244 1.00576 0.99587 0.94388 1.20797 0.96538 0.87786 0.90375 1.44035 1.66795 1.21110 0.99470 1.19204 1.19204 0.93486 1.06113 0.91721 1.25016 0.97142 0.97549 1.00005 1.70029 1.27884 1.38897 1.17992 0.86300 0.80987 0.81567 0.77989 1.21514 1.21800 1.20463 1.20910 0.96439 0.90595 0.90123 1.21993 1.00705 0.98189 0.95057 0.90699 0.93672 0.93404 0.91796 0.92031 0.76208 0.86437 0.87167 0.90277 0.89327 0.91305 0.86511 0.88942 0.85108 0.92602 0.93714 0.96075 0.89627 0.93687 0.96131 0.92907 0.92963 0.92168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 7.54 37.16 0.28 -1.80 16 2 C -0.06 -0.98 0.53 -154.47 -0.08 -1.06 16 3 C 0.13 1.86 4.56 -4.04 -0.02 1.84 16 4 N -0.72 -8.84 4.95 -60.30 -0.30 -9.14 16 5 C 0.50 6.45 7.89 -10.98 -0.09 6.36 16 6 O -0.54 -8.97 16.43 5.56 0.09 -8.87 16 7 C 0.09 0.86 5.80 -5.19 -0.03 0.83 16 8 N -0.59 -5.90 2.32 -175.67 -0.41 -6.31 16 9 C 0.08 0.57 6.63 -4.16 -0.03 0.54 16 10 C 0.04 0.27 6.91 37.27 0.26 0.53 16 11 O -0.37 -3.01 10.85 -35.23 -0.38 -3.39 16 12 C 0.05 0.44 6.98 35.84 0.25 0.69 16 13 C 0.49 5.76 7.58 -11.56 -0.09 5.67 16 14 O -0.54 -8.19 16.36 5.56 0.09 -8.10 16 15 C -0.13 -2.22 4.75 -26.61 -0.13 -2.35 16 16 C 0.17 3.81 4.84 -3.71 -0.02 3.79 16 17 N -0.59 -14.19 2.99 -172.32 -0.52 -14.71 16 18 C -0.25 -6.71 9.59 -15.06 -0.14 -6.86 16 19 H 0.07 1.72 7.89 -52.49 -0.41 1.31 16 20 C 0.00 0.03 4.91 -17.43 -0.09 -0.05 16 21 N -0.90 -25.56 11.19 55.49 0.62 -24.94 16 22 Si 0.90 21.38 29.59 -169.99 -5.03 16.35 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 C 0.15 2.93 6.04 -3.71 -0.02 2.91 16 27 C -0.12 -1.99 4.90 -26.61 -0.13 -2.12 16 28 H 0.07 1.28 4.98 -51.93 -0.26 1.02 16 29 H 0.04 0.58 6.86 -51.93 -0.36 0.23 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.40 4.25 6.16 -40.82 -0.25 4.00 16 34 H 0.12 1.17 7.24 -51.93 -0.38 0.80 16 35 H 0.11 0.71 8.03 -51.93 -0.42 0.29 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.09 0.59 8.13 -51.93 -0.42 0.17 16 38 H 0.07 0.47 8.10 -51.93 -0.42 0.05 16 39 H 0.12 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.13 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.04 0.66 6.82 -51.92 -0.35 0.31 16 44 H 0.02 0.49 6.69 -51.93 -0.35 0.14 16 45 H 0.09 2.19 6.04 -51.93 -0.31 1.87 16 46 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 47 H 0.02 0.42 6.69 -51.93 -0.35 0.07 16 48 H 0.05 1.06 7.94 -51.93 -0.41 0.65 16 49 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 50 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 386.74 15.07 5.83 5.83 Total: -1.00 -34.29 386.74 -8.13 -42.42 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -8.05 Total: 1.95 kcal Atomic # 6 Polarization: 8.99 SS G_CDS: -0.07 Total: 8.92 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: -0.60 Total: -55.10 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -0.20 Total: -20.37 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.29 -8.13 -42.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484136668.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.327 kcal (2) G-P(sol) polarization free energy of solvation -34.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds