Wall clock time and date at job start Sat Apr 11 2020 05:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.44987 * 2 1 4 4 N 1.46501 * 109.46925 * 60.03547 * 3 2 1 5 5 C 1.34783 * 119.99904 * 179.97438 * 4 3 2 6 6 O 1.21277 * 120.00000 * 0.02562 * 5 4 3 7 7 C 1.50696 * 119.99824 * 179.97438 * 5 4 3 8 8 N 1.46505 * 109.46920 * 179.97438 * 7 5 4 9 9 C 1.46086 * 118.72926 * 269.73789 * 8 7 5 10 10 C 1.53212 * 109.82650 * 161.46809 * 9 8 7 11 11 O 1.43248 * 108.51299 * 49.53388 * 10 9 8 12 12 C 1.42963 * 112.98777 * 291.46149 * 11 10 9 13 13 C 1.33876 * 118.72597 * 90.00233 * 8 7 5 14 14 O 1.21277 * 118.83655 * 1.88069 * 13 8 7 15 15 C 1.53035 * 109.46011 * 119.96677 * 2 1 3 16 16 C 1.53192 * 109.31259 * 58.65443 * 15 2 1 17 17 N 1.46922 * 108.77816 * 54.63346 * 16 15 2 18 18 C 1.36941 * 120.63017 * 126.41183 * 17 16 15 19 19 H 1.07997 * 119.99820 * 207.66659 * 18 17 16 20 20 C 1.38810 * 120.00020 * 27.66657 * 18 17 16 21 21 N 1.31615 * 120.00013 * 17.36752 * 20 18 17 22 22 Si 1.86795 * 119.99814 * 197.36706 * 20 18 17 23 23 H 1.48499 * 109.47435 * 90.00376 * 22 20 18 24 24 H 1.48500 * 109.47090 * 210.00129 * 22 20 18 25 25 H 1.48495 * 109.47535 * 329.99678 * 22 20 18 26 26 C 1.46927 * 118.73888 * 306.39278 * 17 16 15 27 27 C 1.53035 * 109.45691 * 240.03244 * 2 1 3 28 28 H 1.08994 * 109.46956 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46661 * 299.96361 * 1 2 3 30 30 H 1.08999 * 109.47328 * 59.96212 * 1 2 3 31 31 H 1.08994 * 109.47222 * 180.02562 * 3 2 1 32 32 H 1.08995 * 109.46981 * 300.03991 * 3 2 1 33 33 H 0.97001 * 120.00113 * 359.97438 * 4 3 2 34 34 H 1.08999 * 109.47748 * 300.00191 * 7 5 4 35 35 H 1.08998 * 109.47321 * 60.00515 * 7 5 4 36 36 H 1.09006 * 109.39486 * 281.77635 * 9 8 7 37 37 H 1.08999 * 109.40121 * 41.49802 * 9 8 7 38 38 H 1.08999 * 109.82632 * 289.74670 * 10 9 8 39 39 H 1.08995 * 109.67445 * 169.23524 * 10 9 8 40 40 H 1.08993 * 109.41581 * 289.49464 * 12 11 10 41 41 H 1.09002 * 109.35864 * 169.66303 * 12 11 10 42 42 H 1.08995 * 109.49922 * 178.60599 * 15 2 1 43 43 H 1.09007 * 109.49750 * 298.70304 * 15 2 1 44 44 H 1.09002 * 109.58798 * 294.84684 * 16 15 2 45 45 H 1.09000 * 109.58774 * 174.42409 * 16 15 2 46 46 H 0.97006 * 120.00037 * 179.97438 * 21 20 18 47 47 H 1.08997 * 109.58787 * 293.81972 * 26 17 16 48 48 H 1.09001 * 109.70419 * 173.46128 * 26 17 16 49 49 H 1.09000 * 109.49541 * 61.30107 * 27 2 1 50 50 H 1.09002 * 109.49570 * 181.39128 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0395 1.4427 0.0000 4 7 1.5516 2.1328 1.1966 5 6 1.8773 3.4232 1.4103 6 8 2.5738 4.0130 0.6117 7 6 1.3749 4.1332 2.6409 8 7 1.8638 5.5143 2.6416 9 6 3.1410 5.8067 3.2876 10 6 3.6783 7.1529 2.7912 11 8 2.6318 8.1258 2.8933 12 6 1.5630 7.8948 1.9723 13 6 1.1203 6.4604 2.0548 14 8 0.0517 6.1494 1.5730 15 6 2.0399 -0.7207 1.2500 16 6 1.4996 -2.1541 1.2642 17 7 1.8625 -2.8089 0.0000 18 6 2.5261 -4.0068 0.0000 19 1 3.1677 -4.2686 -0.8283 20 6 2.3740 -4.8844 1.0646 21 7 1.3608 -4.7448 1.8930 22 14 3.6073 -6.2636 1.3214 23 1 4.7090 -5.7862 2.1952 24 1 2.9311 -7.4190 1.9642 25 1 4.1622 -6.6823 0.0093 26 6 1.4995 -2.1542 -1.2643 27 6 2.0398 -0.7208 -1.2500 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5133 0.8903 30 1 -0.3634 0.5144 -0.8896 31 1 3.1295 1.4431 -0.0005 32 1 1.6754 1.9565 -0.8896 33 1 0.9942 1.6612 1.8352 34 1 0.2849 4.1333 2.6409 35 1 1.7382 3.6192 3.5307 36 1 2.9998 5.8455 4.3678 37 1 3.8573 5.0215 3.0456 38 1 3.9949 7.0641 1.7520 39 1 4.5241 7.4598 3.4063 40 1 1.9040 8.1112 0.9599 41 1 0.7255 8.5472 2.2198 42 1 3.1296 -0.7428 1.2383 43 1 1.6958 -0.1934 2.1398 44 1 0.4147 -2.1347 1.3673 45 1 1.9382 -2.7018 2.0984 46 1 1.2543 -5.3584 2.6368 47 1 0.4146 -2.1347 -1.3674 48 1 1.9362 -2.7010 -2.1000 49 1 1.6958 -0.1934 -2.1398 50 1 3.1296 -0.7428 -1.2383 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484136668.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:12 Heat of formation + Delta-G solvation = -110.973046 kcal Electronic energy + Delta-G solvation = -30622.526576 eV Core-core repulsion = 26456.637732 eV Total energy + Delta-G solvation = -4165.888843 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.95819 -40.89204 -39.74908 -38.73400 -36.73739 -36.26473 -34.69686 -32.76291 -31.58365 -31.38935 -30.39444 -28.69959 -28.10927 -26.87902 -25.55610 -24.83535 -23.91829 -22.52521 -21.63782 -20.18785 -19.65027 -18.79237 -18.73498 -18.15428 -18.09812 -17.00589 -16.83331 -16.69546 -16.63347 -16.17594 -15.87505 -15.55730 -15.47864 -15.25050 -15.03454 -15.02151 -14.69096 -14.46366 -14.40123 -14.10748 -13.97083 -13.56918 -13.20981 -13.01431 -12.89231 -12.79472 -12.69672 -12.57568 -12.34131 -12.31229 -12.24192 -11.90020 -11.80535 -11.64343 -11.47571 -11.29083 -11.08599 -11.04970 -10.55718 -10.48756 -10.09912 -9.88805 -8.63258 -7.86110 -5.29704 1.26497 1.46192 1.47693 1.55995 1.56170 1.65524 2.30889 2.51731 2.75299 3.26784 3.27463 3.69443 3.72010 3.77067 3.83868 3.85329 3.94370 4.02972 4.12826 4.19496 4.34341 4.39780 4.40646 4.48223 4.51300 4.60847 4.69164 4.71633 4.75644 4.80280 4.82378 4.84544 4.95710 5.06047 5.08701 5.12745 5.26297 5.30890 5.39413 5.41070 5.48983 5.56319 5.67714 5.73625 5.86085 6.19842 6.41228 6.48324 6.86738 7.17143 7.17948 7.90270 8.40585 9.19565 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023458 B = 0.002202 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.357541 B =12714.366927 C =13153.554914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.054 4.054 3 C 0.144 3.856 4 N -0.712 5.712 5 C 0.496 3.504 6 O -0.580 6.580 7 C 0.089 3.911 8 N -0.588 5.588 9 C 0.077 3.923 10 C 0.041 3.959 11 O -0.377 6.377 12 C 0.057 3.943 13 C 0.483 3.517 14 O -0.584 6.584 15 C -0.114 4.114 16 C 0.178 3.822 17 N -0.610 5.610 18 C -0.261 4.261 19 H 0.062 0.938 20 C -0.049 4.049 21 N -0.932 5.932 22 Si 0.962 3.038 23 H -0.286 1.286 24 H -0.295 1.295 25 H -0.272 1.272 26 C 0.142 3.858 27 C -0.112 4.112 28 H 0.047 0.953 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.412 0.588 34 H 0.116 0.884 35 H 0.149 0.851 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.059 0.941 39 H 0.147 0.853 40 H 0.100 0.900 41 H 0.145 0.855 42 H 0.044 0.956 43 H 0.073 0.927 44 H 0.007 0.993 45 H 0.049 0.951 46 H 0.249 0.751 47 H 0.021 0.979 48 H 0.047 0.953 49 H 0.078 0.922 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.742 24.256 4.774 24.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.054 4.054 3 C 0.020 3.980 4 N -0.365 5.365 5 C 0.282 3.718 6 O -0.459 6.459 7 C -0.038 4.038 8 N -0.320 5.320 9 C -0.045 4.045 10 C -0.035 4.035 11 O -0.295 6.295 12 C -0.022 4.022 13 C 0.272 3.728 14 O -0.465 6.465 15 C -0.153 4.153 16 C 0.052 3.948 17 N -0.333 5.333 18 C -0.391 4.391 19 H 0.079 0.921 20 C -0.245 4.245 21 N -0.578 5.578 22 Si 0.791 3.209 23 H -0.213 1.213 24 H -0.222 1.222 25 H -0.197 1.197 26 C 0.017 3.983 27 C -0.151 4.151 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.250 0.750 34 H 0.134 0.866 35 H 0.167 0.833 36 H 0.120 0.880 37 H 0.111 0.889 38 H 0.078 0.922 39 H 0.165 0.835 40 H 0.118 0.882 41 H 0.163 0.837 42 H 0.063 0.937 43 H 0.091 0.909 44 H 0.025 0.975 45 H 0.067 0.933 46 H 0.058 0.942 47 H 0.038 0.962 48 H 0.066 0.934 49 H 0.096 0.904 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.678 24.579 4.216 25.081 hybrid contribution 0.195 -1.857 0.072 1.869 sum 2.873 22.721 4.288 23.300 Atomic orbital electron populations 1.21869 0.93824 1.01695 1.01996 1.20561 0.96275 0.92406 0.96186 1.21238 0.98272 0.91099 0.87357 1.45988 1.53222 1.11592 1.25704 1.21570 0.79836 0.81968 0.88458 1.90659 1.40023 1.66831 1.48425 1.21518 1.02771 0.82517 0.96979 1.47236 1.22484 1.06699 1.55561 1.22492 0.83779 0.99313 0.98888 1.23245 0.90923 0.86478 1.02893 1.88180 1.30966 1.51302 1.59031 1.22839 0.92490 0.90510 0.96408 1.21626 0.84112 0.90294 0.76780 1.90720 1.24348 1.83096 1.48327 1.22034 0.99654 0.96800 0.96846 1.20617 0.95458 0.90054 0.88637 1.44304 1.66905 1.20894 1.01241 1.19487 1.19116 0.94525 1.05967 0.92052 1.25706 0.98730 0.99932 1.00111 1.70169 1.29396 1.39823 1.18437 0.85338 0.78818 0.78788 0.77938 1.21254 1.22197 1.19662 1.21032 0.96498 0.92399 0.88364 1.21876 1.00198 0.96099 0.96953 0.93382 0.91739 0.92122 0.92568 0.92225 0.74996 0.86585 0.83336 0.87954 0.88931 0.92220 0.83528 0.88233 0.83713 0.93685 0.90888 0.97527 0.93274 0.94157 0.96161 0.93423 0.90387 0.92791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.76 7.54 71.98 0.54 -3.22 16 2 C -0.05 -1.55 0.53 -52.16 -0.03 -1.58 16 3 C 0.14 3.78 4.56 86.38 0.39 4.17 16 4 N -0.71 -15.82 4.95 -463.07 -2.29 -18.12 16 5 C 0.50 11.92 7.89 87.65 0.69 12.62 16 6 O -0.58 -18.50 16.43 -3.02 -0.05 -18.55 16 7 C 0.09 1.52 5.80 85.63 0.50 2.02 16 8 N -0.59 -10.72 2.32 -828.59 -1.92 -12.65 16 9 C 0.08 0.86 6.63 86.53 0.57 1.43 16 10 C 0.04 0.42 6.91 72.05 0.50 0.91 16 11 O -0.38 -5.30 10.85 -148.98 -1.62 -6.92 16 12 C 0.06 0.87 6.98 71.13 0.50 1.37 16 13 C 0.48 10.78 7.58 87.69 0.66 11.45 16 14 O -0.58 -17.64 16.36 -3.02 -0.05 -17.69 16 15 C -0.11 -3.83 4.75 30.67 0.15 -3.68 16 16 C 0.18 8.03 4.84 86.36 0.42 8.45 16 17 N -0.61 -29.67 2.99 -699.11 -2.09 -31.77 16 18 C -0.26 -14.18 9.59 84.03 0.81 -13.38 16 19 H 0.06 3.30 7.89 -2.91 -0.02 3.28 16 20 C -0.05 -2.72 4.91 84.86 0.42 -2.30 16 21 N -0.93 -54.01 11.19 21.65 0.24 -53.77 16 22 Si 0.96 44.50 29.59 68.60 2.03 46.53 16 23 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 24 H -0.30 -13.73 7.11 99.48 0.71 -13.03 16 25 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 26 C 0.14 5.71 6.04 86.36 0.52 6.23 16 27 C -0.11 -3.56 4.90 30.67 0.15 -3.41 16 28 H 0.05 1.60 4.98 -2.39 -0.01 1.59 16 29 H 0.06 1.51 6.86 -2.39 -0.02 1.49 16 30 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.41 7.49 6.16 -92.71 -0.57 6.92 16 34 H 0.12 2.10 7.24 -2.39 -0.02 2.09 16 35 H 0.15 1.37 8.03 -2.39 -0.02 1.35 16 36 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 37 H 0.09 0.99 8.13 -2.39 -0.02 0.97 16 38 H 0.06 0.73 8.10 -2.39 -0.02 0.71 16 39 H 0.15 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.10 1.38 8.14 -2.39 -0.02 1.37 16 41 H 0.15 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.07 2.02 6.82 -2.38 -0.02 2.00 16 44 H 0.01 0.32 6.69 -2.39 -0.02 0.30 16 45 H 0.05 2.58 6.04 -2.39 -0.01 2.56 16 46 H 0.25 14.02 8.31 -92.70 -0.77 13.25 16 47 H 0.02 0.82 6.69 -2.39 -0.02 0.81 16 48 H 0.05 1.91 7.94 -2.39 -0.02 1.90 16 49 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 50 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -76.25 386.74 1.41 -74.84 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 0.38 Total: 17.00 kcal Atomic # 6 Polarization: 14.30 SS G_CDS: 6.79 Total: 21.09 kcal Atomic # 7 Polarization: -110.24 SS G_CDS: -6.07 Total: -116.30 kcal Atomic # 8 Polarization: -41.44 SS G_CDS: -1.72 Total: -43.16 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -76.25 1.41 -74.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484136668.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.134 kcal (2) G-P(sol) polarization free energy of solvation -76.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds