Wall clock time and date at job start Sat Apr 11 2020 05:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46905 * 109.46151 * 2 1 4 4 C 1.46901 * 110.99870 * 60.02874 * 3 2 1 5 5 C 1.50697 * 109.46943 * 180.02562 * 4 3 2 6 6 O 1.21292 * 120.00024 * 359.97438 * 5 4 3 7 7 N 1.34776 * 119.99767 * 180.02562 * 5 4 3 8 8 C 1.37097 * 119.99759 * 179.97438 * 7 5 4 9 9 H 1.08000 * 120.00171 * 359.97438 * 8 7 5 10 10 C 1.38951 * 120.00074 * 179.97438 * 8 7 5 11 11 N 1.31416 * 119.99768 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00310 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47100 * 90.00351 * 12 10 8 14 14 H 1.48501 * 109.47251 * 210.00371 * 12 10 8 15 15 H 1.48503 * 109.46881 * 330.00485 * 12 10 8 16 16 C 1.53038 * 109.44712 * 119.96441 * 2 1 3 17 17 C 1.53199 * 109.31195 * 58.64938 * 16 2 1 18 18 N 1.46925 * 108.77308 * 54.63209 * 17 16 2 19 19 C 1.34783 * 120.62942 * 126.41588 * 18 17 16 20 20 O 1.21275 * 119.99941 * 179.97438 * 19 18 17 21 21 C 1.50696 * 119.99973 * 359.97438 * 19 18 17 22 22 H 1.09000 * 110.45806 * 302.60524 * 21 19 18 23 23 C 1.54504 * 110.51342 * 180.02562 * 21 19 18 24 24 C 1.54477 * 104.06219 * 241.35473 * 23 21 19 25 25 O 1.44421 * 104.80411 * 23.97940 * 24 23 21 26 26 C 1.44419 * 105.27437 * 319.48473 * 25 24 23 27 27 C 1.46929 * 118.74128 * 306.39178 * 18 17 16 28 28 C 1.53037 * 109.45725 * 240.02918 * 2 1 3 29 29 H 1.09006 * 109.46760 * 59.99562 * 1 2 3 30 30 H 1.08997 * 109.47120 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46970 * 300.00147 * 1 2 3 32 32 H 1.00901 * 110.99869 * 296.07586 * 3 2 1 33 33 H 1.09004 * 109.47031 * 299.99620 * 4 3 2 34 34 H 1.08995 * 109.47111 * 59.99900 * 4 3 2 35 35 H 0.96997 * 120.00713 * 359.97438 * 7 5 4 36 36 H 0.96999 * 119.99907 * 179.97438 * 11 10 8 37 37 H 1.09005 * 109.49562 * 178.59517 * 16 2 1 38 38 H 1.08996 * 109.50275 * 298.69885 * 16 2 1 39 39 H 1.09000 * 109.58521 * 294.84989 * 17 16 2 40 40 H 1.08995 * 109.70415 * 174.48779 * 17 16 2 41 41 H 1.08997 * 110.51048 * 359.97438 * 23 21 19 42 42 H 1.09003 * 110.51280 * 122.70791 * 23 21 19 43 43 H 1.09000 * 110.37212 * 142.80965 * 24 23 21 44 44 H 1.08996 * 110.37327 * 265.02969 * 24 23 21 45 45 H 1.09000 * 110.37454 * 281.68267 * 26 25 24 46 46 H 1.09004 * 110.37346 * 159.34358 * 26 25 24 47 47 H 1.08999 * 109.58557 * 293.82438 * 27 18 17 48 48 H 1.08997 * 109.70062 * 173.46966 * 27 18 17 49 49 H 1.08999 * 109.50175 * 61.31435 * 28 2 1 50 50 H 1.09005 * 109.49428 * 181.41207 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0195 1.3851 0.0000 4 6 1.5489 2.1097 1.1881 5 6 2.0692 3.5236 1.1529 6 8 2.7641 3.8913 0.2293 7 7 1.7632 4.3792 2.1483 8 6 2.2370 5.6653 2.1166 9 1 2.8558 5.9927 1.2942 10 6 1.9212 6.5475 3.1425 11 7 1.1686 6.1490 4.1435 12 14 2.5673 8.2997 3.0997 13 1 1.5953 9.1685 2.3887 14 1 2.7498 8.7941 4.4881 15 1 3.8705 8.3294 2.3884 16 6 2.0395 -0.7208 1.2502 17 6 1.4989 -2.1541 1.2643 18 7 1.8619 -2.8089 0.0001 19 6 2.5148 -3.9880 0.0002 20 8 2.8084 -4.5187 -1.0500 21 6 2.8798 -4.6471 1.3054 22 1 3.4940 -3.9800 1.9103 23 6 3.6186 -5.9800 1.0508 24 6 2.7051 -7.0448 1.6974 25 8 1.3914 -6.4449 1.7111 26 6 1.6074 -5.0643 2.0757 27 6 1.4992 -2.1541 -1.2642 28 6 2.0398 -0.7208 -1.2500 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.7495 1.8640 -0.8461 33 1 0.4590 2.1242 1.1968 34 1 1.9128 1.6104 2.0860 35 1 1.2078 4.0851 2.8871 36 1 0.9484 6.7648 4.8599 37 1 3.1293 -0.7431 1.2385 38 1 1.6955 -0.1934 2.1399 39 1 0.4140 -2.1344 1.3672 40 1 1.9353 -2.7032 2.0987 41 1 3.7193 -6.1625 -0.0190 42 1 4.5966 -5.9726 1.5321 43 1 2.7002 -7.9551 1.0980 44 1 3.0355 -7.2620 2.7131 45 1 1.7683 -4.9762 3.1501 46 1 0.7594 -4.4530 1.7668 47 1 0.4143 -2.1344 -1.3674 48 1 1.9359 -2.7012 -2.0997 49 1 1.6960 -0.1935 -2.1398 50 1 3.1295 -0.7432 -1.2381 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484912020.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:51 Heat of formation + Delta-G solvation = -108.443501 kcal Electronic energy + Delta-G solvation = -30432.149296 eV Core-core repulsion = 26266.370141 eV Total energy + Delta-G solvation = -4165.779154 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.17768 -39.65283 -38.47926 -37.80521 -35.44153 -33.93388 -32.96486 -31.70508 -31.25298 -31.06094 -29.58519 -27.81351 -26.83173 -24.97629 -24.17817 -23.66104 -23.11965 -21.93039 -19.94613 -19.24159 -18.50684 -17.91271 -17.52233 -16.83942 -16.80427 -16.21209 -15.89572 -15.39917 -15.28850 -15.19176 -14.86344 -14.68429 -14.36223 -14.18225 -14.00321 -13.70142 -13.57736 -13.17220 -13.12770 -12.66069 -12.35076 -12.25403 -12.19029 -12.10106 -11.87770 -11.84304 -11.69388 -11.57661 -11.38403 -11.33187 -11.22430 -11.05575 -10.81651 -10.44791 -10.41146 -10.35428 -10.23717 -9.86432 -9.53301 -8.92607 -8.48601 -8.06847 -7.98067 -6.44324 -3.85030 2.31445 2.64438 3.15826 3.24694 3.30688 3.54395 3.87839 3.94476 4.01845 4.11673 4.24012 4.41106 4.41795 4.59269 4.70578 4.75937 4.79435 4.89050 4.95971 5.00961 5.07111 5.11567 5.14579 5.17594 5.21602 5.23968 5.33168 5.35746 5.43753 5.46045 5.52691 5.61418 5.69579 5.76435 5.79677 5.81048 5.96510 5.97660 6.07037 6.23757 6.24738 6.29370 6.33605 7.09514 7.21547 7.52900 7.62950 7.88176 8.04009 8.58757 9.15638 9.51793 10.03348 10.73400 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022786 B = 0.002080 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.508427 B =13461.400700 C =14015.388967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.115 3.885 3 N -0.657 5.657 4 C 0.046 3.954 5 C 0.440 3.560 6 O -0.583 6.583 7 N -0.564 5.564 8 C -0.299 4.299 9 H 0.103 0.897 10 C 0.022 3.978 11 N -0.902 5.902 12 Si 0.930 3.070 13 H -0.278 1.278 14 H -0.284 1.284 15 H -0.269 1.269 16 C -0.125 4.125 17 C 0.103 3.897 18 N -0.608 5.608 19 C 0.527 3.473 20 O -0.537 6.537 21 C -0.148 4.148 22 H 0.113 0.887 23 C -0.147 4.147 24 C 0.045 3.955 25 O -0.371 6.371 26 C 0.054 3.946 27 C 0.113 3.887 28 C -0.120 4.120 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.351 0.649 33 H 0.047 0.953 34 H 0.087 0.913 35 H 0.392 0.608 36 H 0.271 0.729 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.100 0.900 42 H 0.083 0.917 43 H 0.094 0.906 44 H 0.061 0.939 45 H 0.074 0.926 46 H 0.096 0.904 47 H 0.070 0.930 48 H 0.093 0.907 49 H 0.076 0.924 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.749 -23.547 -1.689 23.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.023 3.977 3 N -0.289 5.289 4 C -0.086 4.086 5 C 0.226 3.774 6 O -0.467 6.467 7 N -0.201 5.201 8 C -0.428 4.428 9 H 0.120 0.880 10 C -0.180 4.180 11 N -0.544 5.544 12 Si 0.757 3.243 13 H -0.204 1.204 14 H -0.209 1.209 15 H -0.194 1.194 16 C -0.163 4.163 17 C -0.020 4.020 18 N -0.341 5.341 19 C 0.315 3.685 20 O -0.414 6.414 21 C -0.169 4.169 22 H 0.131 0.869 23 C -0.185 4.185 24 C -0.032 4.032 25 O -0.289 6.289 26 C -0.024 4.024 27 C -0.009 4.009 28 C -0.158 4.158 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.171 0.829 33 H 0.065 0.935 34 H 0.105 0.895 35 H 0.225 0.775 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.104 0.896 41 H 0.119 0.881 42 H 0.101 0.899 43 H 0.112 0.888 44 H 0.080 0.920 45 H 0.092 0.908 46 H 0.114 0.886 47 H 0.088 0.912 48 H 0.111 0.889 49 H 0.095 0.905 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.774 -23.711 -2.481 23.853 hybrid contribution -0.835 1.237 0.549 1.590 sum -1.610 -22.474 -1.932 22.615 Atomic orbital electron populations 1.22721 0.97270 1.02298 1.02613 1.20853 0.91964 0.89765 0.95106 1.60247 1.62912 1.00535 1.05191 1.21754 0.97711 0.94294 0.94843 1.19846 0.85969 0.86619 0.85014 1.90527 1.41774 1.78189 1.36248 1.41861 1.46154 1.10910 1.21165 1.19698 1.29105 0.86260 1.07776 0.87951 1.25261 0.96992 1.00412 0.95311 1.69610 1.37196 1.36815 1.10740 0.85860 0.79355 0.81735 0.77364 1.20429 1.20914 1.19405 1.22024 1.02280 0.93747 0.98291 1.21967 1.00628 0.93849 0.85601 1.48067 1.57441 1.20924 1.07660 1.20255 0.76930 0.80366 0.90939 1.90659 1.54050 1.63340 1.33367 1.22724 0.99251 0.99082 0.95884 0.86901 1.23013 0.98890 0.91910 1.04710 1.23462 0.82463 0.97029 1.00200 1.89167 1.27324 1.21948 1.90473 1.23522 0.96418 0.83965 0.98465 1.21666 0.99969 0.92884 0.86419 1.21908 1.02252 0.94097 0.97575 0.92353 0.91945 0.91828 0.82936 0.93549 0.89530 0.77513 0.91882 0.90321 0.90031 0.90675 0.89639 0.88138 0.89880 0.88810 0.92034 0.90836 0.88585 0.91215 0.88862 0.90509 0.90428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.83 7.47 37.16 0.28 -1.55 16 2 C 0.11 1.25 0.71 -131.56 -0.09 1.16 16 3 N -0.66 -9.84 5.71 -101.18 -0.58 -10.42 16 4 C 0.05 0.76 5.38 -4.98 -0.03 0.74 16 5 C 0.44 10.11 7.82 -10.99 -0.09 10.02 16 6 O -0.58 -15.62 15.78 5.55 0.09 -15.53 16 7 N -0.56 -13.99 5.29 -10.96 -0.06 -14.05 16 8 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 9 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 10 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 11 N -0.90 -24.17 13.05 55.50 0.72 -23.45 16 12 Si 0.93 20.86 29.55 -169.99 -5.02 15.83 16 13 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 14 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 15 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 16 C -0.12 -1.21 4.71 -26.61 -0.13 -1.33 16 17 C 0.10 0.77 4.55 -3.71 -0.02 0.75 16 18 N -0.61 -5.74 2.95 -172.77 -0.51 -6.25 16 19 C 0.53 5.74 7.01 -10.98 -0.08 5.67 16 20 O -0.54 -7.75 14.70 5.56 0.08 -7.67 16 21 C -0.15 -1.16 2.54 -90.21 -0.23 -1.39 16 22 H 0.11 0.68 7.59 -51.93 -0.39 0.28 16 23 C -0.15 -1.13 6.67 -25.17 -0.17 -1.30 16 24 C 0.05 0.33 7.63 37.93 0.29 0.62 16 25 O -0.37 -3.65 11.65 -35.23 -0.41 -4.06 16 26 C 0.05 0.39 5.99 37.94 0.23 0.62 16 27 C 0.11 1.10 5.96 -3.71 -0.02 1.07 16 28 C -0.12 -1.25 5.17 -26.61 -0.14 -1.38 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.51 4.98 -51.93 -0.26 0.25 16 31 H 0.06 0.64 6.40 -51.93 -0.33 0.31 16 32 H 0.35 5.57 8.42 -39.29 -0.33 5.24 16 33 H 0.05 0.69 6.30 -51.93 -0.33 0.36 16 34 H 0.09 1.30 6.27 -51.93 -0.33 0.98 16 35 H 0.39 9.23 7.90 -40.82 -0.32 8.91 16 36 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.08 0.77 6.33 -51.93 -0.33 0.44 16 39 H 0.08 0.49 6.69 -51.93 -0.35 0.14 16 40 H 0.09 0.48 5.14 -51.93 -0.27 0.21 16 41 H 0.10 1.00 6.50 -51.93 -0.34 0.66 16 42 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.10 0.67 6.50 -51.93 -0.34 0.34 16 47 H 0.07 0.60 6.69 -51.93 -0.35 0.25 16 48 H 0.09 1.02 7.01 -51.93 -0.36 0.66 16 49 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 50 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 380.13 15.07 5.73 5.73 Total: -1.00 -33.69 380.13 -7.90 -41.59 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: -7.51 Total: 12.50 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: -0.43 Total: 5.78 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: -0.42 Total: -54.17 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -0.24 Total: -27.26 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.69 -7.90 -41.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484912020.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.851 kcal (2) G-P(sol) polarization free energy of solvation -33.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds