Wall clock time and date at job start Sat Apr 11 2020 05:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46905 * 109.46151 * 2 1 4 4 C 1.46901 * 110.99870 * 60.02874 * 3 2 1 5 5 C 1.50697 * 109.46943 * 180.02562 * 4 3 2 6 6 O 1.21292 * 120.00024 * 359.97438 * 5 4 3 7 7 N 1.34776 * 119.99767 * 180.02562 * 5 4 3 8 8 C 1.37097 * 119.99759 * 179.97438 * 7 5 4 9 9 H 1.08000 * 120.00171 * 359.97438 * 8 7 5 10 10 C 1.38951 * 120.00074 * 179.97438 * 8 7 5 11 11 N 1.31416 * 119.99768 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00310 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47100 * 90.00351 * 12 10 8 14 14 H 1.48501 * 109.47251 * 210.00371 * 12 10 8 15 15 H 1.48503 * 109.46881 * 330.00485 * 12 10 8 16 16 C 1.53038 * 109.44712 * 119.96441 * 2 1 3 17 17 C 1.53199 * 109.31195 * 58.64938 * 16 2 1 18 18 N 1.46925 * 108.77308 * 54.63209 * 17 16 2 19 19 C 1.34783 * 120.62942 * 126.41588 * 18 17 16 20 20 O 1.21275 * 119.99941 * 179.97438 * 19 18 17 21 21 C 1.50696 * 119.99973 * 359.97438 * 19 18 17 22 22 H 1.09000 * 110.45806 * 302.60524 * 21 19 18 23 23 C 1.54504 * 110.51342 * 180.02562 * 21 19 18 24 24 C 1.54477 * 104.06219 * 241.35473 * 23 21 19 25 25 O 1.44421 * 104.80411 * 23.97940 * 24 23 21 26 26 C 1.44419 * 105.27437 * 319.48473 * 25 24 23 27 27 C 1.46929 * 118.74128 * 306.39178 * 18 17 16 28 28 C 1.53037 * 109.45725 * 240.02918 * 2 1 3 29 29 H 1.09006 * 109.46760 * 59.99562 * 1 2 3 30 30 H 1.08997 * 109.47120 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46970 * 300.00147 * 1 2 3 32 32 H 1.00901 * 110.99869 * 296.07586 * 3 2 1 33 33 H 1.09004 * 109.47031 * 299.99620 * 4 3 2 34 34 H 1.08995 * 109.47111 * 59.99900 * 4 3 2 35 35 H 0.96997 * 120.00713 * 359.97438 * 7 5 4 36 36 H 0.96999 * 119.99907 * 179.97438 * 11 10 8 37 37 H 1.09005 * 109.49562 * 178.59517 * 16 2 1 38 38 H 1.08996 * 109.50275 * 298.69885 * 16 2 1 39 39 H 1.09000 * 109.58521 * 294.84989 * 17 16 2 40 40 H 1.08995 * 109.70415 * 174.48779 * 17 16 2 41 41 H 1.08997 * 110.51048 * 359.97438 * 23 21 19 42 42 H 1.09003 * 110.51280 * 122.70791 * 23 21 19 43 43 H 1.09000 * 110.37212 * 142.80965 * 24 23 21 44 44 H 1.08996 * 110.37327 * 265.02969 * 24 23 21 45 45 H 1.09000 * 110.37454 * 281.68267 * 26 25 24 46 46 H 1.09004 * 110.37346 * 159.34358 * 26 25 24 47 47 H 1.08999 * 109.58557 * 293.82438 * 27 18 17 48 48 H 1.08997 * 109.70062 * 173.46966 * 27 18 17 49 49 H 1.08999 * 109.50175 * 61.31435 * 28 2 1 50 50 H 1.09005 * 109.49428 * 181.41207 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0195 1.3851 0.0000 4 6 1.5489 2.1097 1.1881 5 6 2.0692 3.5236 1.1529 6 8 2.7641 3.8913 0.2293 7 7 1.7632 4.3792 2.1483 8 6 2.2370 5.6653 2.1166 9 1 2.8558 5.9927 1.2942 10 6 1.9212 6.5475 3.1425 11 7 1.1686 6.1490 4.1435 12 14 2.5673 8.2997 3.0997 13 1 1.5953 9.1685 2.3887 14 1 2.7498 8.7941 4.4881 15 1 3.8705 8.3294 2.3884 16 6 2.0395 -0.7208 1.2502 17 6 1.4989 -2.1541 1.2643 18 7 1.8619 -2.8089 0.0001 19 6 2.5148 -3.9880 0.0002 20 8 2.8084 -4.5187 -1.0500 21 6 2.8798 -4.6471 1.3054 22 1 3.4940 -3.9800 1.9103 23 6 3.6186 -5.9800 1.0508 24 6 2.7051 -7.0448 1.6974 25 8 1.3914 -6.4449 1.7111 26 6 1.6074 -5.0643 2.0757 27 6 1.4992 -2.1541 -1.2642 28 6 2.0398 -0.7208 -1.2500 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.7495 1.8640 -0.8461 33 1 0.4590 2.1242 1.1968 34 1 1.9128 1.6104 2.0860 35 1 1.2078 4.0851 2.8871 36 1 0.9484 6.7648 4.8599 37 1 3.1293 -0.7431 1.2385 38 1 1.6955 -0.1934 2.1399 39 1 0.4140 -2.1344 1.3672 40 1 1.9353 -2.7032 2.0987 41 1 3.7193 -6.1625 -0.0190 42 1 4.5966 -5.9726 1.5321 43 1 2.7002 -7.9551 1.0980 44 1 3.0355 -7.2620 2.7131 45 1 1.7683 -4.9762 3.1501 46 1 0.7594 -4.4530 1.7668 47 1 0.4143 -2.1344 -1.3674 48 1 1.9359 -2.7012 -2.0997 49 1 1.6960 -0.1935 -2.1398 50 1 3.1295 -0.7432 -1.2381 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484912020.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:51 Heat of formation + Delta-G solvation = -134.602302 kcal Electronic energy + Delta-G solvation = -30433.283626 eV Core-core repulsion = 26266.370141 eV Total energy + Delta-G solvation = -4166.913485 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.93486 -40.58461 -39.81815 -38.94240 -36.50756 -35.85351 -33.72855 -33.26142 -32.50574 -31.98266 -30.19027 -28.66888 -28.21203 -26.34745 -25.24209 -24.46706 -23.85986 -22.67447 -21.06085 -20.64668 -19.88764 -19.29167 -18.40937 -17.79169 -17.45060 -17.37785 -16.81502 -16.55519 -16.39600 -16.13076 -15.93258 -15.82910 -15.68713 -15.50653 -15.09735 -14.81198 -14.57071 -14.33293 -13.92792 -13.73543 -13.52153 -13.36278 -13.31767 -12.94261 -12.88909 -12.85231 -12.74228 -12.45570 -12.42512 -12.35990 -12.27789 -12.12410 -12.10771 -11.88023 -11.69313 -11.49812 -11.29966 -11.02617 -10.57002 -10.33041 -10.00324 -9.72288 -9.24876 -8.46195 -5.94400 1.37934 1.42091 1.52366 1.54380 1.91769 2.06970 2.29404 2.89858 3.01190 3.21214 3.31468 3.49650 3.51161 3.68344 3.79190 3.91509 4.06249 4.08891 4.15662 4.25301 4.28262 4.29853 4.34609 4.41569 4.47474 4.55790 4.56889 4.62313 4.63404 4.67546 4.71439 4.79376 4.83679 4.89896 4.90965 4.94001 5.00546 5.15257 5.17446 5.24918 5.41716 5.44528 5.50701 5.80079 5.93047 6.16649 6.34367 6.43078 6.61613 7.09096 7.13968 7.57983 8.13843 8.71038 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022786 B = 0.002080 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.508427 B =13461.400700 C =14015.388967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.115 3.885 3 N -0.674 5.674 4 C 0.065 3.935 5 C 0.436 3.564 6 O -0.626 6.626 7 N -0.573 5.573 8 C -0.333 4.333 9 H 0.076 0.924 10 C -0.012 4.012 11 N -0.918 5.918 12 Si 0.990 3.010 13 H -0.271 1.271 14 H -0.270 1.270 15 H -0.275 1.275 16 C -0.124 4.124 17 C 0.105 3.895 18 N -0.606 5.606 19 C 0.519 3.481 20 O -0.583 6.583 21 C -0.146 4.146 22 H 0.138 0.862 23 C -0.148 4.148 24 C 0.044 3.956 25 O -0.401 6.401 26 C 0.053 3.947 27 C 0.117 3.883 28 C -0.113 4.113 29 H 0.054 0.946 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.342 0.658 33 H 0.070 0.930 34 H 0.108 0.892 35 H 0.397 0.603 36 H 0.278 0.722 37 H 0.062 0.938 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.111 0.889 41 H 0.071 0.929 42 H 0.104 0.896 43 H 0.093 0.907 44 H 0.085 0.915 45 H 0.103 0.897 46 H 0.098 0.902 47 H 0.087 0.913 48 H 0.076 0.924 49 H 0.079 0.921 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.704 -24.236 0.362 24.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.025 3.975 3 N -0.305 5.305 4 C -0.067 4.067 5 C 0.224 3.776 6 O -0.513 6.513 7 N -0.210 5.210 8 C -0.463 4.463 9 H 0.094 0.906 10 C -0.212 4.212 11 N -0.559 5.559 12 Si 0.814 3.186 13 H -0.197 1.197 14 H -0.195 1.195 15 H -0.200 1.200 16 C -0.162 4.162 17 C -0.018 4.018 18 N -0.338 5.338 19 C 0.308 3.692 20 O -0.463 6.463 21 C -0.167 4.167 22 H 0.155 0.845 23 C -0.186 4.186 24 C -0.032 4.032 25 O -0.320 6.320 26 C -0.024 4.024 27 C -0.006 4.006 28 C -0.151 4.151 29 H 0.073 0.927 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.161 0.839 33 H 0.088 0.912 34 H 0.125 0.875 35 H 0.231 0.769 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.108 0.892 39 H 0.113 0.887 40 H 0.129 0.871 41 H 0.089 0.911 42 H 0.122 0.878 43 H 0.111 0.889 44 H 0.104 0.896 45 H 0.121 0.879 46 H 0.116 0.884 47 H 0.105 0.895 48 H 0.094 0.906 49 H 0.097 0.903 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.757 -24.414 -0.392 24.480 hybrid contribution -0.514 1.419 -0.152 1.517 sum -2.271 -22.994 -0.544 23.113 Atomic orbital electron populations 1.22654 0.95624 1.03529 1.02518 1.20959 0.93174 0.87448 0.95963 1.60255 1.63914 1.02137 1.04219 1.21592 0.98719 0.90066 0.96356 1.21003 0.84478 0.88709 0.83439 1.90497 1.43483 1.79627 1.37682 1.41919 1.46588 1.10553 1.21968 1.19630 1.30470 0.88169 1.08003 0.90561 1.25997 0.96830 1.03763 0.94618 1.69660 1.37267 1.38075 1.10933 0.84965 0.78483 0.77264 0.77857 1.19681 1.19480 1.19983 1.22019 1.01366 0.95140 0.97711 1.22143 1.01917 0.92389 0.85307 1.48170 1.56756 1.20593 1.08252 1.20891 0.76260 0.80480 0.91569 1.90642 1.55851 1.64611 1.35225 1.22811 1.00160 0.99216 0.94493 0.84462 1.23005 1.00212 0.92254 1.03146 1.23590 0.81485 0.96681 1.01489 1.89132 1.28710 1.23323 1.90877 1.23705 0.95913 0.82870 0.99891 1.21589 1.00703 0.91874 0.86432 1.21818 1.00834 0.94714 0.97759 0.92705 0.90013 0.91688 0.83874 0.91223 0.87463 0.76896 0.91297 0.91953 0.89185 0.88679 0.87116 0.91076 0.87797 0.88913 0.89645 0.87891 0.88394 0.89489 0.90593 0.90272 0.92634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.05 7.47 71.98 0.54 -2.51 16 2 C 0.12 2.33 0.71 3.55 0.00 2.33 16 3 N -0.67 -19.69 5.71 -474.01 -2.71 -22.40 16 4 C 0.06 2.04 5.38 85.56 0.46 2.50 16 5 C 0.44 20.14 7.82 87.66 0.69 20.83 16 6 O -0.63 -34.39 15.78 -3.07 -0.05 -34.44 16 7 N -0.57 -28.64 5.29 -306.99 -1.62 -30.26 16 8 C -0.33 -18.69 9.68 84.04 0.81 -17.87 16 9 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 10 C -0.01 -0.64 5.50 84.93 0.47 -0.18 16 11 N -0.92 -48.48 13.05 21.66 0.28 -48.20 16 12 Si 0.99 42.45 29.55 68.60 2.03 44.48 16 13 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 14 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 15 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 16 C -0.12 -2.09 4.71 30.67 0.14 -1.94 16 17 C 0.10 1.22 4.55 86.36 0.39 1.61 16 18 N -0.61 -10.46 2.95 -818.91 -2.41 -12.87 16 19 C 0.52 10.86 7.01 87.65 0.61 11.47 16 20 O -0.58 -17.29 14.70 -3.01 -0.04 -17.33 16 21 C -0.15 -1.97 2.54 -10.53 -0.03 -2.00 16 22 H 0.14 1.17 7.59 -2.39 -0.02 1.15 16 23 C -0.15 -2.10 6.67 31.61 0.21 -1.89 16 24 C 0.04 0.56 7.63 72.48 0.55 1.11 16 25 O -0.40 -7.17 11.65 -148.98 -1.74 -8.91 16 26 C 0.05 0.61 5.99 72.49 0.43 1.04 16 27 C 0.12 2.17 5.96 86.36 0.51 2.68 16 28 C -0.11 -2.30 5.17 30.67 0.16 -2.14 16 29 H 0.05 0.96 8.14 -2.38 -0.02 0.95 16 30 H 0.08 1.05 4.98 -2.39 -0.01 1.03 16 31 H 0.06 1.08 6.40 -2.39 -0.02 1.07 16 32 H 0.34 10.89 8.42 -89.69 -0.76 10.14 16 33 H 0.07 1.91 6.30 -2.39 -0.02 1.89 16 34 H 0.11 2.97 6.27 -2.39 -0.01 2.95 16 35 H 0.40 18.63 7.90 -92.71 -0.73 17.89 16 36 H 0.28 13.71 8.31 -92.71 -0.77 12.94 16 37 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 38 H 0.09 1.40 6.33 -2.39 -0.02 1.38 16 39 H 0.10 0.82 6.69 -2.39 -0.02 0.80 16 40 H 0.11 0.77 5.14 -2.39 -0.01 0.76 16 41 H 0.07 1.46 6.50 -2.39 -0.02 1.44 16 42 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 46 H 0.10 1.05 6.50 -2.39 -0.02 1.04 16 47 H 0.09 1.33 6.69 -2.39 -0.02 1.31 16 48 H 0.08 1.71 7.01 -2.39 -0.02 1.69 16 49 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 50 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 Total: -1.00 -75.62 380.13 -0.80 -76.42 By element: Atomic # 1 Polarization: 38.96 SS G_CDS: -0.50 Total: 38.46 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: 5.96 Total: 15.06 kcal Atomic # 7 Polarization: -107.27 SS G_CDS: -6.46 Total: -113.73 kcal Atomic # 8 Polarization: -58.86 SS G_CDS: -1.83 Total: -60.69 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -75.62 -0.80 -76.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484912020.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.184 kcal (2) G-P(sol) polarization free energy of solvation -75.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds