Wall clock time and date at job start Sat Apr 11 2020 05:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46910 * 109.44676 * 2 1 4 4 C 1.46900 * 110.99720 * 60.03929 * 3 2 1 5 5 C 1.50698 * 109.47081 * 179.97438 * 4 3 2 6 6 O 1.21297 * 119.99852 * 0.02562 * 5 4 3 7 7 N 1.34776 * 120.00283 * 179.97438 * 5 4 3 8 8 C 1.37092 * 120.00224 * 179.97438 * 7 5 4 9 9 H 1.08005 * 119.99765 * 0.02562 * 8 7 5 10 10 C 1.38951 * 120.00152 * 179.97438 * 8 7 5 11 11 N 1.31411 * 119.99890 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00011 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47370 * 60.00179 * 12 10 8 14 14 H 1.48498 * 109.47162 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.46904 * 300.00149 * 12 10 8 16 16 C 1.53040 * 109.45940 * 240.04178 * 2 1 3 17 17 C 1.53199 * 109.30921 * 301.34014 * 16 2 1 18 18 N 1.46921 * 108.77342 * 305.36900 * 17 16 2 19 19 C 1.34782 * 120.63062 * 233.58055 * 18 17 16 20 20 O 1.21287 * 119.99399 * 0.02562 * 19 18 17 21 21 C 1.50690 * 120.00311 * 179.97438 * 19 18 17 22 22 H 1.09005 * 110.43737 * 61.10009 * 21 19 18 23 23 C 1.54818 * 110.48893 * 183.78162 * 21 19 18 24 24 C 1.55000 * 102.09030 * 139.56157 * 23 21 19 25 25 O 1.44382 * 103.48861 * 322.97548 * 24 23 21 26 26 C 1.43745 * 106.97554 * 40.06459 * 25 24 23 27 27 C 1.46930 * 118.74397 * 53.85955 * 18 17 16 28 28 C 1.53040 * 109.46288 * 119.96885 * 2 1 3 29 29 H 1.08995 * 109.46736 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.46764 * 299.96358 * 1 2 3 31 31 H 1.08997 * 109.47291 * 59.95858 * 1 2 3 32 32 H 1.00898 * 110.99546 * 183.98575 * 3 2 1 33 33 H 1.09000 * 109.47089 * 299.99363 * 4 3 2 34 34 H 1.08995 * 109.47302 * 59.99591 * 4 3 2 35 35 H 0.96999 * 119.99904 * 0.02562 * 7 5 4 36 36 H 0.97001 * 119.99405 * 180.02562 * 11 10 8 37 37 H 1.09001 * 109.49885 * 181.39482 * 16 2 1 38 38 H 1.08999 * 109.52503 * 61.30602 * 16 2 1 39 39 H 1.08997 * 109.58651 * 185.57615 * 17 16 2 40 40 H 1.09001 * 109.58311 * 65.15172 * 17 16 2 41 41 H 1.08996 * 110.90598 * 257.75826 * 23 21 19 42 42 H 1.09001 * 110.90139 * 21.32930 * 23 21 19 43 43 H 1.08999 * 110.61711 * 204.48002 * 24 23 21 44 44 H 1.08997 * 110.62057 * 81.47966 * 24 23 21 45 45 H 1.08998 * 109.87927 * 92.91125 * 26 25 24 46 46 H 1.08998 * 109.87870 * 213.90748 * 26 25 24 47 47 H 1.09004 * 109.58077 * 65.92531 * 27 18 17 48 48 H 1.08994 * 109.58740 * 186.35224 * 27 18 17 49 49 H 1.09002 * 109.49657 * 178.60972 * 28 2 1 50 50 H 1.09003 * 109.49362 * 298.67015 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0191 1.3853 0.0000 4 6 1.5485 2.1097 1.1882 5 6 2.0695 3.5233 1.1537 6 8 2.7641 3.8913 0.2299 7 7 1.7628 4.3790 2.1488 8 6 2.2372 5.6649 2.1177 9 1 2.8564 5.9923 1.2955 10 6 1.9206 6.5472 3.1433 11 7 1.1668 6.1490 4.1434 12 14 2.5664 8.2995 3.1006 13 1 2.0716 8.9797 1.8767 14 1 2.0902 9.0320 4.3013 15 1 4.0513 8.2797 3.0899 16 6 2.0399 -0.7206 -1.2502 17 6 1.4996 -2.1541 -1.2644 18 7 1.8626 -2.8087 -0.0002 19 6 2.5157 -3.9878 -0.0002 20 8 2.8096 -4.5181 -1.0507 21 6 2.8816 -4.6465 1.3048 22 1 1.9848 -4.8721 1.8819 23 6 3.7036 -5.9335 1.0504 24 6 4.7771 -5.8590 2.1660 25 8 5.0784 -4.4494 2.2497 26 6 3.8324 -3.7452 2.1160 27 6 1.4947 -2.1569 1.2642 28 6 2.0400 -0.7208 1.2500 29 1 -0.3632 -1.0276 -0.0005 30 1 -0.3633 0.5133 0.8904 31 1 -0.3634 0.5145 -0.8896 32 1 3.0256 1.4133 -0.0655 33 1 0.4587 2.1239 1.1970 34 1 1.9127 1.6104 2.0860 35 1 1.2071 4.0848 2.8874 36 1 0.9455 6.7651 4.8592 37 1 3.1296 -0.7427 -1.2384 38 1 1.6962 -0.1934 -2.1401 39 1 1.9381 -2.7016 -2.0986 40 1 0.4146 -2.1346 -1.3674 41 1 3.0822 -6.8213 1.1672 42 1 4.1654 -5.9112 0.0633 43 1 5.6646 -6.4250 1.8831 44 1 4.3741 -6.2222 3.1113 45 1 3.4087 -3.5513 3.1014 46 1 3.9932 -2.8041 1.5902 47 1 0.4093 -2.1377 1.3630 48 1 1.9301 -2.7063 2.0987 49 1 3.1297 -0.7428 1.2382 50 1 1.6963 -0.1931 2.1398 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484912021.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:54 Heat of formation + Delta-G solvation = -107.197274 kcal Electronic energy + Delta-G solvation = -30625.020256 eV Core-core repulsion = 26459.295143 eV Total energy + Delta-G solvation = -4165.725114 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.23653 -39.62564 -38.53313 -37.83350 -35.41946 -33.92515 -33.04656 -31.73558 -31.25559 -31.01043 -29.59239 -27.91941 -26.92657 -24.87538 -23.95541 -23.68189 -23.14143 -22.02187 -20.05010 -19.22922 -18.33707 -17.91441 -17.77643 -17.01464 -16.83733 -16.19697 -15.90597 -15.54927 -15.21576 -15.04112 -14.90652 -14.63520 -14.34666 -14.18597 -13.98213 -13.68068 -13.57429 -13.27574 -12.92925 -12.79207 -12.42198 -12.28516 -12.18577 -11.97686 -11.89931 -11.80770 -11.70278 -11.50882 -11.43457 -11.33576 -11.28175 -11.06483 -10.85778 -10.48433 -10.44906 -10.31370 -10.22238 -9.89412 -9.51229 -8.96779 -8.47432 -8.05909 -7.97042 -6.43169 -3.83866 2.24687 2.60122 3.19278 3.24966 3.29475 3.48555 3.86963 3.89020 4.01682 4.07583 4.24582 4.42519 4.43664 4.57972 4.62589 4.71064 4.74630 4.81670 4.91745 4.98650 5.06927 5.09855 5.15132 5.19829 5.21814 5.25071 5.32477 5.39903 5.42972 5.46412 5.57230 5.64338 5.66376 5.73714 5.77816 5.80544 5.95082 5.99480 6.07339 6.22951 6.25482 6.31561 6.40059 7.03896 7.21950 7.53818 7.62956 7.81581 8.04882 8.59931 9.16677 9.52836 10.04501 10.74533 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018204 B = 0.002269 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.785182 B =12336.570323 C =13179.609762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.116 3.884 3 N -0.655 5.655 4 C 0.046 3.954 5 C 0.440 3.560 6 O -0.583 6.583 7 N -0.564 5.564 8 C -0.299 4.299 9 H 0.102 0.898 10 C 0.022 3.978 11 N -0.903 5.903 12 Si 0.930 3.070 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.274 1.274 16 C -0.120 4.120 17 C 0.113 3.887 18 N -0.608 5.608 19 C 0.525 3.475 20 O -0.537 6.537 21 C -0.147 4.147 22 H 0.110 0.890 23 C -0.140 4.140 24 C 0.045 3.955 25 O -0.372 6.372 26 C 0.056 3.944 27 C 0.103 3.897 28 C -0.170 4.170 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.349 0.651 33 H 0.088 0.912 34 H 0.045 0.955 35 H 0.392 0.608 36 H 0.272 0.728 37 H 0.066 0.934 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.063 0.937 45 H 0.071 0.929 46 H 0.090 0.910 47 H 0.078 0.922 48 H 0.084 0.916 49 H 0.069 0.931 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.847 -24.569 -1.317 24.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.024 3.976 3 N -0.287 5.287 4 C -0.086 4.086 5 C 0.225 3.775 6 O -0.467 6.467 7 N -0.201 5.201 8 C -0.429 4.429 9 H 0.120 0.880 10 C -0.179 4.179 11 N -0.544 5.544 12 Si 0.757 3.243 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.199 1.199 16 C -0.159 4.159 17 C -0.010 4.010 18 N -0.342 5.342 19 C 0.313 3.687 20 O -0.414 6.414 21 C -0.169 4.169 22 H 0.128 0.872 23 C -0.178 4.178 24 C -0.031 4.031 25 O -0.291 6.291 26 C -0.021 4.021 27 C -0.020 4.020 28 C -0.210 4.210 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.169 0.831 33 H 0.107 0.893 34 H 0.063 0.937 35 H 0.225 0.775 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.106 0.894 39 H 0.111 0.889 40 H 0.091 0.909 41 H 0.103 0.897 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.081 0.919 45 H 0.089 0.911 46 H 0.108 0.892 47 H 0.096 0.904 48 H 0.103 0.897 49 H 0.088 0.912 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.585 -24.122 -2.715 24.326 hybrid contribution 0.117 0.404 1.418 1.479 sum -1.468 -23.718 -1.297 23.799 Atomic orbital electron populations 1.22020 0.93816 1.01321 1.03165 1.20900 0.95648 0.87939 0.93129 1.60284 1.17436 1.10709 1.40232 1.21760 1.01159 0.93987 0.91699 1.19841 0.86001 0.86881 0.84740 1.90529 1.42069 1.78254 1.35882 1.41851 1.46142 1.10930 1.21131 1.19650 1.29133 0.86346 1.07762 0.88005 1.25254 0.96951 1.00390 0.95323 1.69601 1.37065 1.36938 1.10800 0.85923 0.79170 0.81576 0.77589 1.19873 1.20977 1.19912 1.21916 1.01208 0.94052 0.98687 1.21702 1.00184 0.92877 0.86213 1.48128 1.57183 1.21049 1.07818 1.20286 0.77000 0.80590 0.90825 1.90686 1.53922 1.63521 1.33291 1.22754 1.01184 0.97307 0.95642 0.87153 1.23131 0.97194 0.95889 1.01595 1.23628 0.98935 0.83082 0.97503 1.88939 1.28179 1.17645 1.94318 1.23299 0.84153 0.95743 0.98951 1.22010 1.00793 0.93630 0.85548 1.22866 1.01643 0.95448 1.01042 0.92335 0.92148 0.91426 0.83069 0.89344 0.93700 0.77516 0.91830 0.91483 0.89372 0.88856 0.90915 0.89660 0.88455 0.88519 0.91895 0.91106 0.89205 0.90414 0.89738 0.91218 0.89764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 7.48 37.16 0.28 -1.17 16 2 C 0.12 1.26 0.71 -131.55 -0.09 1.16 16 3 N -0.66 -9.86 5.71 -101.17 -0.58 -10.44 16 4 C 0.05 0.77 5.38 -4.98 -0.03 0.74 16 5 C 0.44 10.16 7.82 -10.99 -0.09 10.07 16 6 O -0.58 -15.69 15.78 5.54 0.09 -15.61 16 7 N -0.56 -14.06 5.29 -10.96 -0.06 -14.12 16 8 C -0.30 -8.29 9.68 -14.94 -0.14 -8.43 16 9 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 10 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 11 N -0.90 -24.29 13.05 55.50 0.72 -23.57 16 12 Si 0.93 20.96 29.55 -169.99 -5.02 15.94 16 13 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 14 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 15 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 16 C -0.12 -1.25 5.17 -26.61 -0.14 -1.38 16 17 C 0.11 1.06 5.96 -3.71 -0.02 1.04 16 18 N -0.61 -5.53 2.93 -172.51 -0.51 -6.04 16 19 C 0.53 5.51 6.92 -10.99 -0.08 5.43 16 20 O -0.54 -7.51 14.88 5.55 0.08 -7.43 16 21 C -0.15 -1.14 2.53 -90.25 -0.23 -1.36 16 22 H 0.11 0.59 7.99 -51.93 -0.42 0.17 16 23 C -0.14 -1.06 6.50 -24.72 -0.16 -1.22 16 24 C 0.05 0.32 7.72 38.21 0.29 0.62 16 25 O -0.37 -3.86 11.52 -35.23 -0.41 -4.27 16 26 C 0.06 0.46 5.57 37.73 0.21 0.67 16 27 C 0.10 0.75 5.10 -3.49 -0.02 0.74 16 28 C -0.17 -1.57 4.69 -26.39 -0.12 -1.70 16 29 H 0.06 0.47 4.97 -51.93 -0.26 0.21 16 30 H 0.06 0.62 6.40 -51.92 -0.33 0.28 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.35 5.65 8.42 -39.29 -0.33 5.32 16 33 H 0.09 1.36 6.30 -51.93 -0.33 1.03 16 34 H 0.05 0.66 6.27 -51.93 -0.33 0.34 16 35 H 0.39 9.28 7.90 -40.82 -0.32 8.96 16 36 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.09 0.99 7.01 -51.93 -0.36 0.63 16 40 H 0.07 0.60 6.69 -51.93 -0.35 0.25 16 41 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.10 0.96 6.93 -51.93 -0.36 0.60 16 43 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.07 0.45 7.66 -51.93 -0.40 0.05 16 46 H 0.09 0.83 6.46 -51.93 -0.34 0.49 16 47 H 0.08 0.49 6.69 -51.93 -0.35 0.15 16 48 H 0.08 0.49 4.40 -51.93 -0.23 0.26 16 49 H 0.07 0.70 7.63 -51.93 -0.40 0.31 16 50 H 0.08 0.78 6.33 -51.93 -0.33 0.45 16 LS Contribution 379.12 15.07 5.71 5.71 Total: -1.00 -33.54 379.12 -7.86 -41.40 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: -7.46 Total: 12.72 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: -0.43 Total: 5.70 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: -0.42 Total: -54.17 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.24 Total: -27.30 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.54 -7.86 -41.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484912021.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.799 kcal (2) G-P(sol) polarization free energy of solvation -33.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds