Wall clock time and date at job start Sat Apr 11 2020 05:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86805 * 120.00273 * 2 1 4 4 H 1.48498 * 109.46909 * 270.00042 * 3 2 1 5 5 H 1.48497 * 109.46701 * 29.99951 * 3 2 1 6 6 H 1.48494 * 109.47142 * 149.99876 * 3 2 1 7 7 C 1.38955 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99918 * 179.97438 * 7 2 1 9 9 N 1.37096 * 119.99464 * 0.02562 * 7 2 1 10 10 C 1.34784 * 119.99735 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99813 * 359.72559 * 10 9 7 12 12 C 1.50694 * 119.99988 * 179.72439 * 10 9 7 13 13 N 1.46903 * 109.47066 * 180.02562 * 12 10 9 14 14 C 1.46898 * 110.99849 * 179.97438 * 13 12 10 15 15 C 1.53007 * 109.46873 * 179.97438 * 14 13 12 16 16 C 1.53786 * 113.61398 * 274.13470 * 15 14 13 17 17 C 1.53955 * 87.01847 * 220.04776 * 16 15 14 18 18 N 1.46497 * 113.73773 * 139.94412 * 17 16 15 19 19 C 1.34777 * 119.99831 * 107.40378 * 18 17 16 20 20 O 1.21277 * 120.00348 * 359.97438 * 19 18 17 21 21 C 1.50706 * 120.00282 * 179.97438 * 19 18 17 22 22 C 1.52991 * 109.47613 * 179.97438 * 21 19 18 23 23 H 1.09004 * 110.27170 * 55.63773 * 22 21 19 24 24 C 1.54942 * 110.31567 * 177.83481 * 22 21 19 25 25 C 1.55294 * 100.94557 * 155.36111 * 24 22 21 26 26 C 1.54378 * 102.25403 * 325.86697 * 25 24 22 27 27 O 1.43246 * 107.58867 * 21.35769 * 26 25 24 28 28 C 1.53778 * 87.11093 * 25.36515 * 17 16 15 29 29 H 0.97000 * 119.99610 * 359.97438 * 1 2 3 30 30 H 0.97000 * 120.00868 * 359.72070 * 9 7 2 31 31 H 1.08998 * 109.47224 * 299.99701 * 12 10 9 32 32 H 1.09002 * 109.47054 * 60.00213 * 12 10 9 33 33 H 1.00901 * 111.00123 * 303.95511 * 13 12 10 34 34 H 1.08994 * 109.47150 * 299.99924 * 14 13 12 35 35 H 1.08995 * 109.47174 * 60.00376 * 14 13 12 36 36 H 1.08993 * 112.84765 * 45.33484 * 15 14 13 37 37 H 1.09000 * 113.61452 * 334.57212 * 16 15 14 38 38 H 1.09006 * 113.60906 * 105.47111 * 16 15 14 39 39 H 1.08995 * 113.53608 * 270.81028 * 17 16 15 40 40 H 0.97000 * 120.00341 * 287.40108 * 18 17 16 41 41 H 1.09004 * 109.47057 * 300.00210 * 21 19 18 42 42 H 1.09004 * 109.46830 * 59.99959 * 21 19 18 43 43 H 1.09006 * 111.12344 * 273.28687 * 24 22 21 44 44 H 1.09000 * 111.12295 * 37.43664 * 24 22 21 45 45 H 1.09006 * 110.85153 * 207.67689 * 25 24 22 46 46 H 1.09002 * 111.02723 * 84.13551 * 25 24 22 47 47 H 1.09002 * 109.83382 * 261.84245 * 26 25 24 48 48 H 1.09007 * 109.90825 * 140.91334 * 26 25 24 49 49 H 1.09005 * 113.61431 * 220.08879 * 28 17 16 50 50 H 1.09000 * 113.61714 * 89.18460 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2101 -3.5579 -0.0045 12 6 1.2436 -4.8629 0.0068 13 7 2.1982 -5.9795 0.0061 14 6 1.4979 -7.2708 0.0128 15 6 2.5228 -8.4068 0.0112 16 6 3.0046 -8.8000 -1.3953 17 6 2.9459 -10.2628 -0.9190 18 7 2.4240 -11.1903 -1.9257 19 6 3.2568 -12.0481 -2.5478 20 8 4.4384 -12.0519 -2.2745 21 6 2.7200 -13.0027 -3.5830 22 6 3.8643 -13.8579 -4.1305 23 1 4.3767 -14.3695 -3.3157 24 6 3.3248 -14.8844 -5.1580 25 6 4.5967 -15.1452 -6.0100 26 6 5.2884 -13.7651 -5.9970 27 8 4.7891 -13.0413 -4.8663 28 6 1.8916 -9.8061 0.1031 29 1 -0.4849 0.8401 0.0004 30 1 0.3533 -2.3907 0.0043 31 1 0.6207 -4.9185 0.8995 32 1 0.6133 -4.9228 -0.8804 33 1 2.8302 -5.9146 -0.7778 34 1 0.8767 -7.3426 0.9055 35 1 0.8694 -7.3478 -0.8744 36 1 3.3338 -8.2462 0.7215 37 1 2.2878 -8.5681 -2.1830 38 1 4.0128 -8.4544 -1.6239 39 1 3.8735 -10.6100 -0.4641 40 1 1.4790 -11.1871 -2.1446 41 1 1.9692 -13.6484 -3.1273 42 1 2.2670 -12.4378 -4.3979 43 1 2.9893 -15.7961 -4.6635 44 1 2.5281 -14.4524 -5.7636 45 1 4.3302 -15.4360 -7.0262 46 1 5.2303 -15.9010 -5.5457 47 1 5.0540 -13.2253 -6.9145 48 1 6.3675 -13.8916 -5.9080 49 1 2.0025 -10.2717 1.0825 50 1 0.8699 -9.8498 -0.2741 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485087113.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:00 Heat of formation + Delta-G solvation = -107.532426 kcal Electronic energy + Delta-G solvation = -28174.472769 eV Core-core repulsion = 24008.733122 eV Total energy + Delta-G solvation = -4165.739647 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.55024 -39.69333 -38.54806 -38.06904 -35.18478 -33.88142 -33.42979 -32.70540 -32.03889 -31.18977 -28.59273 -27.16223 -25.92995 -25.43200 -23.74567 -22.62009 -22.06094 -21.40603 -20.64154 -19.70731 -19.10817 -17.85810 -17.53956 -17.06761 -16.77275 -16.22059 -15.76651 -15.58423 -15.56408 -15.25546 -14.75928 -14.52201 -14.29829 -14.19255 -13.74569 -13.58145 -13.50564 -13.16680 -13.10745 -12.69045 -12.64819 -12.33952 -12.19623 -12.16099 -11.79961 -11.70316 -11.58801 -11.53113 -11.49941 -11.30488 -11.13420 -10.99349 -10.67005 -10.37184 -10.35727 -10.19077 -9.92424 -9.82645 -9.48412 -9.18559 -8.42463 -8.01203 -7.92805 -6.39409 -3.79995 2.44728 2.91493 3.19885 3.28279 3.34749 3.40863 3.94060 3.98539 4.09647 4.20782 4.29322 4.33005 4.42227 4.49636 4.57045 4.66907 4.69030 4.75290 4.81559 4.93260 5.04995 5.12825 5.16863 5.19847 5.27357 5.30709 5.38304 5.42238 5.45880 5.49190 5.52602 5.59284 5.68001 5.69631 5.75165 5.83415 5.92348 6.01213 6.02563 6.20567 6.30538 6.43869 6.72077 7.26762 7.29126 7.57665 7.72799 8.04482 8.09263 8.64292 9.20612 9.57187 10.09022 10.78428 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022127 B = 0.001434 C = 0.001386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.132588 B =19525.659701 C =20192.516143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.565 5.565 10 C 0.441 3.559 11 O -0.582 6.582 12 C 0.051 3.949 13 N -0.669 5.669 14 C 0.072 3.928 15 C -0.103 4.103 16 C -0.150 4.150 17 C 0.123 3.877 18 N -0.724 5.724 19 C 0.513 3.487 20 O -0.526 6.526 21 C -0.143 4.143 22 C 0.097 3.903 23 H 0.078 0.922 24 C -0.154 4.154 25 C -0.156 4.156 26 C 0.048 3.952 27 O -0.365 6.365 28 C -0.139 4.139 29 H 0.271 0.729 30 H 0.392 0.608 31 H 0.085 0.915 32 H 0.042 0.958 33 H 0.350 0.650 34 H 0.071 0.929 35 H 0.026 0.974 36 H 0.104 0.896 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.114 0.886 40 H 0.399 0.601 41 H 0.105 0.895 42 H 0.100 0.900 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.067 0.933 48 H 0.067 0.933 49 H 0.075 0.925 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.602 -32.543 -9.255 33.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.226 3.774 11 O -0.466 6.466 12 C -0.082 4.082 13 N -0.301 5.301 14 C -0.058 4.058 15 C -0.122 4.122 16 C -0.189 4.189 17 C 0.018 3.982 18 N -0.375 5.375 19 C 0.299 3.701 20 O -0.401 6.401 21 C -0.183 4.183 22 C 0.039 3.961 23 H 0.096 0.904 24 C -0.191 4.191 25 C -0.193 4.193 26 C -0.029 4.029 27 O -0.284 6.284 28 C -0.177 4.177 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.103 0.897 32 H 0.060 0.940 33 H 0.169 0.831 34 H 0.090 0.910 35 H 0.044 0.956 36 H 0.123 0.877 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.132 0.868 40 H 0.233 0.767 41 H 0.123 0.877 42 H 0.118 0.882 43 H 0.103 0.897 44 H 0.099 0.901 45 H 0.100 0.900 46 H 0.095 0.905 47 H 0.086 0.914 48 H 0.086 0.914 49 H 0.094 0.906 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.111 -32.160 -8.326 33.220 hybrid contribution -1.231 0.690 -1.156 1.824 sum -1.120 -31.470 -9.482 32.886 Atomic orbital electron populations 1.69613 1.05937 1.28099 1.50770 1.25254 0.95628 0.99693 0.97362 0.85856 0.79268 0.80809 0.78352 1.20453 1.20935 1.19395 1.19718 0.93397 0.82270 1.47488 0.87921 1.41865 1.09171 1.04603 1.64507 1.19842 0.88408 0.84757 0.84377 1.90527 1.13775 1.87075 1.55256 1.21668 0.94381 0.91082 1.01082 1.60062 1.18989 0.99913 1.51128 1.21907 0.94944 0.88759 1.00158 1.22384 0.99155 0.92891 0.97790 1.23586 1.02619 0.95461 0.97226 1.22543 0.98562 0.88084 0.89001 1.46042 1.11551 1.38171 1.41738 1.20551 0.86705 0.81022 0.81834 1.90743 1.15961 1.69647 1.63741 1.21894 0.99086 0.98548 0.98763 1.22672 0.89018 0.90028 0.94386 0.90407 1.23338 0.98262 0.99806 0.97709 1.23107 0.96843 0.98049 1.01345 1.23131 0.98509 0.91491 0.89787 1.88574 1.61132 1.39106 1.39601 1.23359 0.98626 0.96340 0.99421 0.91920 0.77486 0.89659 0.94038 0.83124 0.91026 0.95623 0.87735 0.90005 0.90699 0.86790 0.76737 0.87678 0.88160 0.89713 0.90107 0.90003 0.90453 0.91435 0.91447 0.90641 0.89715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.76 13.05 55.50 0.72 -24.04 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.30 29.55 -169.99 -5.02 16.28 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.30 -8.48 9.68 -14.93 -0.14 -8.63 16 8 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 9 N -0.56 -14.55 5.29 -10.96 -0.06 -14.61 16 10 C 0.44 10.64 7.82 -10.98 -0.09 10.56 16 11 O -0.58 -16.22 15.78 5.54 0.09 -16.13 16 12 C 0.05 0.91 6.17 -4.98 -0.03 0.88 16 13 N -0.67 -11.01 6.13 -115.06 -0.70 -11.72 16 14 C 0.07 0.86 5.51 -3.82 -0.02 0.84 16 15 C -0.10 -1.07 3.89 -89.80 -0.35 -1.42 16 16 C -0.15 -1.56 7.45 -25.82 -0.19 -1.75 16 17 C 0.12 1.15 4.24 -67.03 -0.28 0.86 16 18 N -0.72 -5.70 5.36 -52.93 -0.28 -5.99 16 19 C 0.51 5.10 7.73 -10.98 -0.08 5.02 16 20 O -0.53 -7.71 15.13 -6.30 -0.10 -7.80 16 21 C -0.14 -0.89 5.45 -27.88 -0.15 -1.04 16 22 C 0.10 0.75 2.92 -25.71 -0.08 0.67 16 23 H 0.08 0.68 8.00 -51.93 -0.42 0.26 16 24 C -0.15 -0.70 6.57 -24.49 -0.16 -0.86 16 25 C -0.16 -0.75 7.02 -24.79 -0.17 -0.92 16 26 C 0.05 0.35 7.79 37.88 0.30 0.64 16 27 O -0.36 -3.95 10.41 -47.09 -0.49 -4.44 16 28 C -0.14 -1.09 7.40 -25.92 -0.19 -1.28 16 29 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.39 9.61 7.90 -40.82 -0.32 9.29 16 31 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 32 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.35 6.04 8.43 -39.29 -0.33 5.71 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.03 0.29 7.87 -51.93 -0.41 -0.12 16 36 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.08 0.82 7.92 -51.93 -0.41 0.41 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.11 1.28 7.46 -51.93 -0.39 0.89 16 40 H 0.40 1.95 8.73 -40.82 -0.36 1.60 16 41 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 44 H 0.08 0.31 8.06 -51.93 -0.42 -0.11 16 45 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 46 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 47 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 48 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 49 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.08 0.55 8.08 -51.93 -0.42 0.13 16 LS Contribution 410.91 15.07 6.19 6.19 Total: -1.00 -35.77 410.91 -9.88 -45.64 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: -8.48 Total: 12.54 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: -1.75 Total: 4.07 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: -0.32 Total: -56.36 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -0.50 Total: -28.37 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -35.77 -9.88 -45.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485087113.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.890 kcal (2) G-P(sol) polarization free energy of solvation -35.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds