Wall clock time and date at job start Sat Apr 11 2020 05:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46503 * 110.28873 * 2 1 4 4 C 1.34778 * 119.99592 * 60.67439 * 3 2 1 5 5 O 1.21282 * 120.00392 * 0.02562 * 4 3 2 6 6 C 1.50708 * 119.99880 * 180.02562 * 4 3 2 7 7 C 1.53000 * 109.47136 * 180.02562 * 6 4 3 8 8 H 1.08998 * 110.43458 * 305.69732 * 7 6 4 9 9 C 1.54808 * 110.48538 * 183.15668 * 7 6 4 10 10 C 1.55233 * 101.98613 * 220.51702 * 9 7 6 11 11 O 1.44387 * 103.56362 * 36.88073 * 10 9 7 12 12 C 1.43744 * 106.97313 * 320.01229 * 11 10 9 13 13 C 1.54259 * 110.32326 * 122.12827 * 2 1 3 14 14 C 1.54378 * 105.05860 * 118.99809 * 13 2 1 15 15 N 1.48563 * 104.59761 * 23.85557 * 14 13 2 16 16 C 1.46898 * 111.00216 * 200.96428 * 15 14 13 17 17 C 1.50699 * 109.47065 * 176.47068 * 16 15 14 18 18 O 1.21289 * 120.00115 * 6.03241 * 17 16 15 19 19 N 1.34780 * 119.99699 * 186.03215 * 17 16 15 20 20 C 1.37097 * 119.99759 * 179.97438 * 19 17 16 21 21 H 1.08004 * 120.00247 * 0.02562 * 20 19 17 22 22 C 1.38957 * 119.99755 * 179.97438 * 20 19 17 23 23 N 1.31405 * 120.00230 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99706 * 179.72672 * 22 20 19 25 25 H 1.48502 * 109.47433 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46951 * 120.00087 * 24 22 20 27 27 H 1.48498 * 109.47194 * 240.00007 * 24 22 20 28 28 C 1.48566 * 104.21571 * 320.51374 * 15 14 13 29 29 H 1.09007 * 109.47443 * 299.32889 * 1 2 3 30 30 H 1.09002 * 109.47121 * 59.32147 * 1 2 3 31 31 H 1.08996 * 109.47304 * 179.32119 * 1 2 3 32 32 H 0.96999 * 120.00198 * 240.67577 * 3 2 1 33 33 H 1.09002 * 109.46879 * 300.00187 * 6 4 3 34 34 H 1.08995 * 109.46866 * 59.99880 * 6 4 3 35 35 H 1.09000 * 110.90836 * 338.63801 * 9 7 6 36 36 H 1.08997 * 110.90976 * 102.24641 * 9 7 6 37 37 H 1.09000 * 110.52178 * 278.38577 * 10 9 7 38 38 H 1.09000 * 110.64622 * 155.43537 * 10 9 7 39 39 H 1.09003 * 109.87848 * 267.08673 * 12 11 10 40 40 H 1.09005 * 110.00103 * 146.01071 * 12 11 10 41 41 H 1.09000 * 110.32473 * 0.10175 * 13 2 1 42 42 H 1.09007 * 110.32177 * 237.89032 * 13 2 1 43 43 H 1.09000 * 110.41578 * 265.07608 * 14 13 2 44 44 H 1.09008 * 110.51320 * 142.68004 * 14 13 2 45 45 H 1.08999 * 109.47244 * 56.46638 * 16 15 14 46 46 H 1.09002 * 109.46680 * 296.46828 * 16 15 14 47 47 H 0.97005 * 120.00042 * 0.02562 * 19 17 16 48 48 H 0.96997 * 119.99880 * 179.97438 * 23 22 20 49 49 H 1.09006 * 110.40420 * 158.26282 * 28 15 14 50 50 H 1.08997 * 110.41576 * 280.70067 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0379 1.3741 0.0000 4 6 1.7354 2.2044 1.0177 5 8 1.0430 1.8138 1.9336 6 6 2.2574 3.6181 1.0175 7 6 1.7722 4.3412 2.2755 8 1 0.6870 4.2782 2.3560 9 6 2.2294 5.8201 2.2607 10 6 2.6385 6.0459 3.7411 11 8 3.2372 4.7886 4.1225 12 6 2.4415 3.7482 3.5304 13 6 2.0657 -0.7693 1.2250 14 6 2.8827 -1.9400 0.6376 15 7 3.2721 -1.4806 -0.7205 16 6 3.6118 -2.6192 -1.5843 17 6 3.9168 -2.1221 -2.9739 18 8 3.9644 -0.9305 -3.1949 19 7 4.1366 -3.0018 -3.9710 20 6 4.4135 -2.5496 -5.2353 21 1 4.4559 -1.4885 -5.4322 22 6 4.6407 -3.4566 -6.2633 23 7 4.5896 -4.7476 -6.0238 24 14 5.0104 -2.8404 -7.9876 25 1 5.0047 -1.3555 -7.9946 26 1 6.3457 -3.3318 -8.4131 27 1 3.9755 -3.3443 -8.9258 28 6 2.0683 -0.7706 -1.2246 29 1 -0.3634 0.5034 0.8960 30 1 -0.3633 0.5243 -0.8838 31 1 -0.3634 -1.0275 -0.0122 32 1 2.5920 1.6864 -0.7324 33 1 3.3473 3.6030 1.0050 34 1 1.8913 4.1405 0.1337 35 1 3.0828 5.9569 1.5965 36 1 1.4082 6.4784 1.9773 37 1 1.7605 6.2540 4.3526 38 1 3.3634 6.8560 3.8203 39 1 1.6792 3.4176 4.2360 40 1 3.0761 2.9074 3.2499 41 1 1.2387 -1.1485 1.8254 42 1 2.7067 -0.1245 1.8263 43 1 2.2682 -2.8380 0.5734 44 1 3.7690 -2.1293 1.2434 45 1 2.7699 -3.3104 -1.6222 46 1 4.4854 -3.1323 -1.1821 47 1 4.0982 -3.9548 -3.7943 48 1 4.7478 -5.3806 -6.7415 49 1 2.3413 -0.0773 -2.0202 50 1 1.3263 -1.4855 -1.5801 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569634607.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:11 Heat of formation + Delta-G solvation = -113.979912 kcal Electronic energy + Delta-G solvation = -30192.669788 eV Core-core repulsion = 26026.650557 eV Total energy + Delta-G solvation = -4166.019231 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -40.63958 -39.62250 -38.63748 -37.51829 -34.60746 -33.87504 -33.71660 -31.67170 -31.21829 -30.09258 -29.49638 -27.43142 -27.09739 -25.43070 -23.94952 -23.07179 -21.65476 -21.30803 -20.24270 -19.39195 -19.19519 -17.89433 -17.22636 -16.82081 -16.59445 -16.11964 -15.64265 -15.39062 -15.16658 -15.04594 -14.94845 -14.51047 -14.25036 -13.81549 -13.63370 -13.35195 -13.19542 -13.09932 -12.96422 -12.65333 -12.37449 -12.21982 -12.09034 -11.92695 -11.86148 -11.61814 -11.50401 -11.42049 -11.24052 -11.16959 -10.98580 -10.96326 -10.82141 -10.74521 -10.38113 -10.27010 -9.88183 -9.63633 -9.54187 -9.03657 -8.50811 -8.10059 -7.98782 -6.46189 -3.87103 2.61211 3.12576 3.13912 3.23692 3.30234 3.72470 3.85246 4.01683 4.18421 4.23283 4.39122 4.50654 4.59288 4.71667 4.76936 4.90575 5.00128 5.02079 5.13718 5.18446 5.22460 5.26990 5.30415 5.38761 5.41211 5.44869 5.54921 5.59311 5.67945 5.69659 5.71548 5.76869 5.78966 5.82041 5.89534 5.94455 5.99309 6.11703 6.20904 6.22043 6.35661 6.62738 6.66751 7.05770 7.17010 7.50859 7.56981 8.01425 8.23272 8.56441 9.13272 9.49437 10.00448 10.71513 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018211 B = 0.002172 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.132974 B =12885.667822 C =13649.269116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.171 3.829 3 N -0.710 5.710 4 C 0.513 3.487 5 O -0.542 6.542 6 C -0.136 4.136 7 C -0.104 4.104 8 H 0.091 0.909 9 C -0.153 4.153 10 C 0.046 3.954 11 O -0.383 6.383 12 C 0.060 3.940 13 C -0.116 4.116 14 C 0.026 3.974 15 N -0.484 5.484 16 C 0.033 3.967 17 C 0.443 3.557 18 O -0.581 6.581 19 N -0.563 5.563 20 C -0.298 4.298 21 H 0.104 0.896 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.282 1.282 28 C 0.035 3.965 29 H 0.077 0.923 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.406 0.594 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.059 0.941 38 H 0.091 0.909 39 H 0.062 0.938 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.043 0.957 44 H 0.081 0.919 45 H 0.049 0.951 46 H 0.092 0.908 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.109 0.891 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.247 13.637 15.953 22.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.084 3.916 3 N -0.361 5.361 4 C 0.299 3.701 5 O -0.420 6.420 6 C -0.176 4.176 7 C -0.123 4.123 8 H 0.109 0.891 9 C -0.191 4.191 10 C -0.031 4.031 11 O -0.302 6.302 12 C -0.017 4.017 13 C -0.155 4.155 14 C -0.102 4.102 15 N -0.208 5.208 16 C -0.098 4.098 17 C 0.228 3.772 18 O -0.466 6.466 19 N -0.199 5.199 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.542 5.542 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.207 1.207 27 H -0.208 1.208 28 C -0.093 4.093 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.242 0.758 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.077 0.923 38 H 0.109 0.891 39 H 0.080 0.920 40 H 0.101 0.899 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.061 0.939 44 H 0.099 0.901 45 H 0.067 0.933 46 H 0.110 0.890 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.127 0.873 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.010 14.282 16.440 22.878 hybrid contribution -0.383 -1.001 -1.477 1.825 sum -7.393 13.281 14.962 21.329 Atomic orbital electron populations 1.22178 0.93842 1.02327 1.03149 1.21044 0.93454 0.81397 0.95701 1.46203 1.53157 1.12067 1.24717 1.20576 0.80222 0.87366 0.81931 1.90656 1.38382 1.77380 1.35622 1.21785 1.02950 0.93077 0.99775 1.22278 1.01756 0.93903 0.94340 0.89081 1.23282 1.02133 0.95817 0.97875 1.23564 0.98104 0.87687 0.93723 1.88880 1.52146 1.15118 1.74075 1.23172 0.94569 0.90648 0.93278 1.22612 0.99451 0.96573 0.96815 1.23234 0.98964 0.96490 0.91499 1.65204 1.32768 1.21921 1.00910 1.22092 1.01288 0.92540 0.93904 1.19691 0.84743 0.87164 0.85577 1.90467 1.56838 1.15843 1.83420 1.41882 1.61527 1.08451 1.08066 1.19735 1.44532 0.94587 0.83949 0.87850 1.25277 0.97440 0.94951 1.00329 1.69616 1.49686 1.00833 1.34042 0.85802 0.77922 0.79102 0.81522 1.19227 1.20724 1.20766 1.23470 0.91063 0.98344 0.96381 0.90411 0.92535 0.91924 0.75836 0.88417 0.88555 0.90123 0.90041 0.92299 0.89069 0.91970 0.89909 0.90741 0.90703 0.93903 0.90107 0.93329 0.89006 0.77471 0.91882 0.87287 0.93006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 8.17 37.15 0.30 -1.57 16 2 C 0.17 2.19 1.01 -130.44 -0.13 2.05 16 3 N -0.71 -8.33 5.10 -46.33 -0.24 -8.56 16 4 C 0.51 5.77 6.55 -10.98 -0.07 5.70 16 5 O -0.54 -7.34 12.46 5.56 0.07 -7.27 16 6 C -0.14 -1.13 4.91 -27.88 -0.14 -1.27 16 7 C -0.10 -0.88 2.64 -89.09 -0.24 -1.12 16 8 H 0.09 0.82 7.96 -51.93 -0.41 0.41 16 9 C -0.15 -1.03 6.73 -24.60 -0.17 -1.19 16 10 C 0.05 0.35 7.72 38.34 0.30 0.65 16 11 O -0.38 -4.28 11.52 -35.23 -0.41 -4.69 16 12 C 0.06 0.62 6.39 37.73 0.24 0.86 16 13 C -0.12 -1.46 5.48 -25.35 -0.14 -1.60 16 14 C 0.03 0.34 6.49 -2.18 -0.01 0.33 16 15 N -0.48 -7.80 5.19 -231.40 -1.20 -9.00 16 16 C 0.03 0.58 5.39 -4.98 -0.03 0.56 16 17 C 0.44 10.06 7.43 -10.98 -0.08 9.98 16 18 O -0.58 -14.79 14.00 5.55 0.08 -14.71 16 19 N -0.56 -13.89 5.29 -10.96 -0.06 -13.95 16 20 C -0.30 -8.11 9.68 -14.93 -0.14 -8.25 16 21 H 0.10 2.94 7.16 -52.48 -0.38 2.57 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.13 13.05 55.50 0.72 -23.41 16 24 Si 0.93 20.65 29.55 -169.99 -5.02 15.63 16 25 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 26 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 27 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 28 C 0.04 0.55 4.78 -2.18 -0.01 0.53 16 29 H 0.08 1.00 6.31 -51.92 -0.33 0.67 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 32 H 0.41 4.56 8.27 -40.82 -0.34 4.23 16 33 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.51 7.87 -51.93 -0.41 0.10 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.08 0.93 7.37 -51.93 -0.38 0.55 16 41 H 0.07 0.89 7.71 -51.93 -0.40 0.49 16 42 H 0.07 1.01 7.31 -51.92 -0.38 0.63 16 43 H 0.04 0.52 7.92 -51.93 -0.41 0.11 16 44 H 0.08 0.99 8.14 -51.92 -0.42 0.57 16 45 H 0.05 0.77 7.98 -51.93 -0.41 0.36 16 46 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 47 H 0.39 9.32 7.90 -40.82 -0.32 9.00 16 48 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 49 H 0.11 1.94 6.14 -51.93 -0.32 1.62 16 50 H 0.05 0.80 7.67 -51.93 -0.40 0.40 16 LS Contribution 393.61 15.07 5.93 5.93 Total: -1.00 -31.46 393.61 -8.79 -40.25 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: -8.25 Total: 13.65 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: -0.41 Total: 6.14 kcal Atomic # 7 Polarization: -54.15 SS G_CDS: -0.77 Total: -54.92 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -0.26 Total: -26.68 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.46 -8.79 -40.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569634607.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.734 kcal (2) G-P(sol) polarization free energy of solvation -31.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds