Wall clock time and date at job start Sat Apr 11 2020 05:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99725 * 2 1 4 4 H 1.48502 * 109.46999 * 274.84890 * 3 2 1 5 5 H 1.48494 * 109.47361 * 34.84781 * 3 2 1 6 6 H 1.48500 * 109.47133 * 154.85365 * 3 2 1 7 7 C 1.38803 * 119.99960 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99726 * 171.55746 * 7 2 1 9 9 N 1.36934 * 120.00290 * 351.27629 * 7 2 1 10 10 C 1.47423 * 125.65010 * 345.97767 * 9 7 2 11 11 C 1.54903 * 104.83357 * 204.09110 * 10 9 7 12 12 C 1.55156 * 101.58025 * 322.98293 * 11 10 9 13 13 H 1.08996 * 110.72528 * 276.96366 * 12 11 10 14 14 C 1.53001 * 110.72162 * 153.86520 * 12 11 10 15 15 N 1.46498 * 109.47355 * 174.99990 * 14 12 11 16 16 C 1.34775 * 120.00078 * 179.97438 * 15 14 12 17 17 O 1.21288 * 120.00118 * 0.02562 * 16 15 14 18 18 C 1.50700 * 120.00021 * 180.02562 * 16 15 14 19 19 C 1.53004 * 109.47159 * 180.02562 * 18 16 15 20 20 C 1.53000 * 109.47219 * 179.97438 * 19 18 16 21 21 H 1.09001 * 109.86436 * 53.99498 * 20 19 18 22 22 C 1.54099 * 109.87902 * 174.99934 * 20 19 18 23 23 C 1.54811 * 104.18849 * 121.45470 * 22 20 19 24 24 C 1.54995 * 102.09154 * 20.88014 * 23 22 20 25 25 H 1.08994 * 110.61696 * 81.47733 * 24 23 22 26 26 C 1.50696 * 110.62054 * 204.31993 * 24 23 22 27 27 N 1.34777 * 119.99752 * 295.00365 * 26 24 23 28 28 O 1.21281 * 120.00582 * 114.99493 * 26 24 23 29 29 O 1.43744 * 109.87718 * 292.83065 * 20 19 18 30 30 C 1.47021 * 125.64959 * 165.66158 * 9 7 2 31 31 H 0.97003 * 119.99886 * 0.02562 * 1 2 3 32 32 H 1.09007 * 110.36368 * 322.92745 * 10 9 7 33 33 H 1.08998 * 110.36978 * 85.13646 * 10 9 7 34 34 H 1.08996 * 111.00709 * 81.05945 * 11 10 9 35 35 H 1.09000 * 111.00348 * 204.87746 * 11 10 9 36 36 H 1.08997 * 109.47336 * 295.00699 * 14 12 11 37 37 H 1.09008 * 109.46709 * 55.00299 * 14 12 11 38 38 H 0.97000 * 120.00183 * 0.02562 * 15 14 12 39 39 H 1.09002 * 109.46948 * 299.99947 * 18 16 15 40 40 H 1.08998 * 109.47337 * 60.00151 * 18 16 15 41 41 H 1.08997 * 109.47113 * 300.00100 * 19 18 16 42 42 H 1.08998 * 109.47125 * 59.99712 * 19 18 16 43 43 H 1.09004 * 110.49027 * 240.13309 * 22 20 19 44 44 H 1.09000 * 110.48833 * 2.77488 * 22 20 19 45 45 H 1.08996 * 110.90443 * 139.07749 * 23 22 20 46 46 H 1.09000 * 110.90538 * 262.68147 * 23 22 20 47 47 H 0.97003 * 120.00178 * 359.97438 * 27 26 24 48 48 H 0.97008 * 120.00474 * 180.02562 * 27 26 24 49 49 H 1.09006 * 109.88586 * 298.39919 * 30 9 7 50 50 H 1.09004 * 109.88476 * 59.55988 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3951 2.1056 -1.3951 5 1 1.5026 2.6209 0.8000 6 1 3.5952 1.4128 0.5949 7 6 2.0102 -1.2021 0.0005 8 1 3.0815 -1.2072 -0.1368 9 7 1.3375 -2.3810 0.1809 10 6 -0.0472 -2.5142 0.6689 11 6 -0.1198 -3.9391 1.2722 12 6 0.7748 -4.7395 0.2891 13 1 0.2083 -5.0367 -0.5933 14 6 1.3780 -5.9638 0.9805 15 7 2.1183 -6.7627 0.0008 16 6 2.7388 -7.8955 0.3856 17 8 2.6839 -8.2539 1.5430 18 6 3.5009 -8.7169 -0.6221 19 6 4.1039 -9.9414 0.0693 20 6 4.8771 -10.7757 -0.9540 21 1 5.6076 -10.1496 -1.4664 22 6 5.5922 -11.9426 -0.2457 23 6 5.0270 -13.2084 -0.9349 24 6 4.4972 -12.6389 -2.2756 25 1 5.3098 -12.5284 -2.9935 26 6 3.4128 -13.5226 -2.8359 27 7 3.7022 -14.7802 -3.2250 28 8 2.2796 -13.1024 -2.9367 29 8 3.9656 -11.3482 -1.9067 30 6 1.8743 -3.7234 -0.0862 31 1 -0.4850 0.8401 -0.0004 32 1 -0.2529 -1.7668 1.4353 33 1 -0.7518 -2.4136 -0.1567 34 1 0.2935 -3.9580 2.2805 35 1 -1.1430 -4.3149 1.2645 36 1 2.0551 -5.6384 1.7702 37 1 0.5795 -6.5673 1.4124 38 1 2.1626 -6.4759 -0.9248 39 1 2.8239 -9.0427 -1.4118 40 1 4.2991 -8.1132 -1.0540 41 1 4.7808 -9.6160 0.8592 42 1 3.3055 -10.5450 0.5008 43 1 6.6700 -11.8762 -0.3944 44 1 5.3525 -11.9479 0.8176 45 1 5.8148 -13.9416 -1.1079 46 1 4.2164 -13.6413 -0.3487 47 1 4.6086 -15.1163 -3.1446 48 1 3.0042 -15.3490 -3.5860 49 1 2.1251 -3.8190 -1.1427 50 1 2.7605 -3.8966 0.5244 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663603776.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:52 Heat of formation + Delta-G solvation = -112.606305 kcal Electronic energy + Delta-G solvation = -28921.511602 eV Core-core repulsion = 24755.551935 eV Total energy + Delta-G solvation = -4165.959667 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.74066 -39.65325 -38.78981 -37.61226 -34.60901 -34.31796 -33.73377 -32.52606 -32.39777 -30.05320 -29.26702 -28.14106 -25.90912 -24.98664 -23.51593 -22.58251 -21.32424 -21.02180 -20.57780 -19.92206 -19.46805 -18.17770 -17.47203 -17.16205 -16.80019 -16.48881 -16.21628 -15.90421 -15.31051 -15.11220 -14.94152 -14.74955 -14.63891 -13.96055 -13.82027 -13.56645 -13.48588 -13.40708 -12.61698 -12.46752 -12.43927 -12.29881 -12.10749 -11.76076 -11.70444 -11.49830 -11.44737 -11.28069 -11.02697 -10.83559 -10.79685 -10.41658 -10.39518 -10.20952 -10.10802 -10.02600 -10.00867 -9.85796 -9.69913 -9.57481 -8.86365 -8.56318 -6.74340 -5.73808 -3.07683 2.12554 2.63009 2.78300 3.32731 3.40298 3.46032 3.48320 3.55396 3.94487 4.18065 4.33242 4.42024 4.50930 4.57120 4.69132 4.74227 4.94065 5.05071 5.09947 5.16645 5.25495 5.29715 5.30628 5.38258 5.45223 5.51843 5.55953 5.58809 5.74292 5.83813 5.92201 6.04350 6.12001 6.15524 6.22066 6.36241 6.41765 6.51058 6.59964 6.61463 6.76204 6.79541 6.95390 7.48975 7.63032 7.65656 7.77087 7.79268 8.28902 8.36065 9.21137 9.83166 10.52500 11.39751 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022073 B = 0.001655 C = 0.001642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.205269 B =16914.458002 C =17043.712274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.006 4.006 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.231 4.231 8 H 0.074 0.926 9 N -0.602 5.602 10 C 0.174 3.826 11 C -0.137 4.137 12 C -0.114 4.114 13 H 0.077 0.923 14 C 0.132 3.868 15 N -0.726 5.726 16 C 0.511 3.489 17 O -0.550 6.550 18 C -0.141 4.141 19 C -0.100 4.100 20 C 0.073 3.927 21 H 0.076 0.924 22 C -0.151 4.151 23 C -0.144 4.144 24 C 0.057 3.943 25 H 0.097 0.903 26 C 0.521 3.479 27 N -0.854 5.854 28 O -0.517 6.517 29 O -0.341 6.341 30 C 0.141 3.859 31 H 0.253 0.747 32 H 0.062 0.938 33 H 0.030 0.970 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.402 0.598 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.083 0.917 47 H 0.401 0.599 48 H 0.406 0.594 49 H 0.019 0.981 50 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.409 -31.239 -4.527 33.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.359 4.359 8 H 0.092 0.908 9 N -0.329 5.329 10 C 0.049 3.951 11 C -0.176 4.176 12 C -0.133 4.133 13 H 0.095 0.905 14 C 0.009 3.991 15 N -0.377 5.377 16 C 0.297 3.703 17 O -0.428 6.428 18 C -0.181 4.181 19 C -0.138 4.138 20 C 0.015 3.985 21 H 0.094 0.906 22 C -0.188 4.188 23 C -0.182 4.182 24 C -0.004 4.004 25 H 0.115 0.885 26 C 0.304 3.696 27 N -0.420 5.420 28 O -0.391 6.391 29 O -0.259 6.259 30 C 0.015 3.985 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.048 0.952 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.236 0.764 39 H 0.119 0.881 40 H 0.111 0.889 41 H 0.103 0.897 42 H 0.097 0.903 43 H 0.100 0.900 44 H 0.105 0.895 45 H 0.106 0.894 46 H 0.102 0.898 47 H 0.229 0.771 48 H 0.237 0.763 49 H 0.037 0.963 50 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 11.426 -30.672 -3.747 32.945 hybrid contribution 0.816 0.584 -0.680 1.212 sum 12.242 -30.088 -4.428 32.784 Atomic orbital electron populations 1.69957 1.05003 1.25207 1.56173 1.24880 0.95622 0.97887 1.01933 0.86134 0.78781 0.83541 0.77489 1.21602 1.21609 1.20587 1.18996 0.90804 0.82790 1.43336 0.90841 1.44467 1.12154 1.00073 1.76175 1.21343 0.86383 0.90572 0.96781 1.22981 0.97783 0.98705 0.98119 1.22420 0.98019 0.93747 0.99097 0.90489 1.21431 0.95229 0.91171 0.91303 1.46120 1.53549 1.24652 1.13407 1.20683 0.79136 0.80990 0.89442 1.90681 1.61853 1.70505 1.19796 1.21651 1.00949 0.96802 0.98655 1.21526 1.00643 0.95095 0.96491 1.22940 0.91275 0.94601 0.89700 0.90613 1.23013 1.00795 0.93314 1.01720 1.23110 1.01556 0.98579 0.94944 1.22945 0.94290 0.85602 0.97613 0.88527 1.20254 0.89524 0.82338 0.77441 1.43744 1.15215 1.14818 1.68211 1.90814 1.22072 1.73414 1.52790 1.89057 1.46965 1.29083 1.60783 1.21347 0.94109 0.86033 0.96979 0.93708 0.91963 0.95208 0.91898 0.91966 0.91377 0.91780 0.76398 0.88142 0.88944 0.89716 0.90258 0.90014 0.89464 0.89397 0.89840 0.77076 0.76296 0.96295 0.95889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.23 10.82 55.49 0.60 -26.63 16 2 C -0.01 -0.18 5.39 -17.43 -0.09 -0.27 16 3 Si 0.91 22.27 29.56 -169.99 -5.03 17.24 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 7 C -0.23 -6.54 10.22 -15.06 -0.15 -6.69 16 8 H 0.07 2.02 7.84 -52.48 -0.41 1.61 16 9 N -0.60 -15.61 3.39 -170.07 -0.58 -16.18 16 10 C 0.17 4.24 5.37 -2.53 -0.01 4.23 16 11 C -0.14 -2.56 6.54 -24.59 -0.16 -2.72 16 12 C -0.11 -1.94 2.95 -88.78 -0.26 -2.20 16 13 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 14 C 0.13 2.03 5.02 -4.04 -0.02 2.01 16 15 N -0.73 -9.77 5.47 -60.29 -0.33 -10.10 16 16 C 0.51 7.08 7.83 -10.99 -0.09 7.00 16 17 O -0.55 -9.59 15.98 5.55 0.09 -9.50 16 18 C -0.14 -1.44 5.62 -27.88 -0.16 -1.59 16 19 C -0.10 -0.95 3.99 -26.73 -0.11 -1.06 16 20 C 0.07 0.54 3.41 -26.16 -0.09 0.45 16 21 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 22 C -0.15 -0.75 6.64 -25.20 -0.17 -0.92 16 23 C -0.14 -0.62 6.57 -24.72 -0.16 -0.79 16 24 C 0.06 0.37 3.76 -26.83 -0.10 0.27 16 25 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 26 C 0.52 4.31 7.48 -10.99 -0.08 4.23 16 27 N -0.85 -2.91 8.86 31.22 0.28 -2.64 16 28 O -0.52 -7.23 17.41 -13.43 -0.23 -7.47 16 29 O -0.34 -3.42 10.13 -54.21 -0.55 -3.97 16 30 C 0.14 2.93 6.76 -3.06 -0.02 2.91 16 31 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.06 1.68 7.19 -51.92 -0.37 1.30 16 33 H 0.03 0.79 7.98 -51.93 -0.41 0.37 16 34 H 0.06 1.16 8.05 -51.93 -0.42 0.74 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 1.14 7.94 -51.93 -0.41 0.73 16 37 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 38 H 0.40 4.62 8.47 -40.82 -0.35 4.27 16 39 H 0.10 1.04 7.91 -51.93 -0.41 0.63 16 40 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 42 H 0.08 0.91 8.10 -51.93 -0.42 0.48 16 43 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 44 H 0.09 0.46 7.70 -51.93 -0.40 0.06 16 45 H 0.09 0.12 8.14 -51.93 -0.42 -0.31 16 46 H 0.08 0.46 8.05 -51.93 -0.42 0.04 16 47 H 0.40 -0.03 8.83 -40.82 -0.36 -0.39 16 48 H 0.41 1.15 8.93 -40.82 -0.36 0.78 16 49 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.02 0.48 7.69 -51.93 -0.40 0.08 16 LS Contribution 404.86 15.07 6.10 6.10 Total: -1.00 -38.25 404.86 -9.83 -48.08 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -8.51 Total: 0.21 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: -1.68 Total: 4.85 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: -0.03 Total: -55.54 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.69 Total: -20.94 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.03 Total: 17.24 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -38.25 -9.83 -48.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663603776.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.527 kcal (2) G-P(sol) polarization free energy of solvation -38.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds