Wall clock time and date at job start Sat Apr 11 2020 05:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99725 * 2 1 4 4 H 1.48502 * 109.46999 * 274.84890 * 3 2 1 5 5 H 1.48494 * 109.47361 * 34.84781 * 3 2 1 6 6 H 1.48500 * 109.47133 * 154.85365 * 3 2 1 7 7 C 1.38803 * 119.99960 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99726 * 171.55746 * 7 2 1 9 9 N 1.36934 * 120.00290 * 351.27629 * 7 2 1 10 10 C 1.47423 * 125.65010 * 345.97767 * 9 7 2 11 11 C 1.54903 * 104.83357 * 204.09110 * 10 9 7 12 12 C 1.55156 * 101.58025 * 322.98293 * 11 10 9 13 13 H 1.08996 * 110.72528 * 276.96366 * 12 11 10 14 14 C 1.53001 * 110.72162 * 153.86520 * 12 11 10 15 15 N 1.46498 * 109.47355 * 174.99990 * 14 12 11 16 16 C 1.34775 * 120.00078 * 179.97438 * 15 14 12 17 17 O 1.21288 * 120.00118 * 0.02562 * 16 15 14 18 18 C 1.50700 * 120.00021 * 180.02562 * 16 15 14 19 19 C 1.53004 * 109.47159 * 180.02562 * 18 16 15 20 20 C 1.53000 * 109.47219 * 179.97438 * 19 18 16 21 21 H 1.09001 * 109.86436 * 53.99498 * 20 19 18 22 22 C 1.54099 * 109.87902 * 174.99934 * 20 19 18 23 23 C 1.54811 * 104.18849 * 121.45470 * 22 20 19 24 24 C 1.54995 * 102.09154 * 20.88014 * 23 22 20 25 25 H 1.08994 * 110.61696 * 81.47733 * 24 23 22 26 26 C 1.50696 * 110.62054 * 204.31993 * 24 23 22 27 27 N 1.34777 * 119.99752 * 295.00365 * 26 24 23 28 28 O 1.21281 * 120.00582 * 114.99493 * 26 24 23 29 29 O 1.43744 * 109.87718 * 292.83065 * 20 19 18 30 30 C 1.47021 * 125.64959 * 165.66158 * 9 7 2 31 31 H 0.97003 * 119.99886 * 0.02562 * 1 2 3 32 32 H 1.09007 * 110.36368 * 322.92745 * 10 9 7 33 33 H 1.08998 * 110.36978 * 85.13646 * 10 9 7 34 34 H 1.08996 * 111.00709 * 81.05945 * 11 10 9 35 35 H 1.09000 * 111.00348 * 204.87746 * 11 10 9 36 36 H 1.08997 * 109.47336 * 295.00699 * 14 12 11 37 37 H 1.09008 * 109.46709 * 55.00299 * 14 12 11 38 38 H 0.97000 * 120.00183 * 0.02562 * 15 14 12 39 39 H 1.09002 * 109.46948 * 299.99947 * 18 16 15 40 40 H 1.08998 * 109.47337 * 60.00151 * 18 16 15 41 41 H 1.08997 * 109.47113 * 300.00100 * 19 18 16 42 42 H 1.08998 * 109.47125 * 59.99712 * 19 18 16 43 43 H 1.09004 * 110.49027 * 240.13309 * 22 20 19 44 44 H 1.09000 * 110.48833 * 2.77488 * 22 20 19 45 45 H 1.08996 * 110.90443 * 139.07749 * 23 22 20 46 46 H 1.09000 * 110.90538 * 262.68147 * 23 22 20 47 47 H 0.97003 * 120.00178 * 359.97438 * 27 26 24 48 48 H 0.97008 * 120.00474 * 180.02562 * 27 26 24 49 49 H 1.09006 * 109.88586 * 298.39919 * 30 9 7 50 50 H 1.09004 * 109.88476 * 59.55988 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3951 2.1056 -1.3951 5 1 1.5026 2.6209 0.8000 6 1 3.5952 1.4128 0.5949 7 6 2.0102 -1.2021 0.0005 8 1 3.0815 -1.2072 -0.1368 9 7 1.3375 -2.3810 0.1809 10 6 -0.0472 -2.5142 0.6689 11 6 -0.1198 -3.9391 1.2722 12 6 0.7748 -4.7395 0.2891 13 1 0.2083 -5.0367 -0.5933 14 6 1.3780 -5.9638 0.9805 15 7 2.1183 -6.7627 0.0008 16 6 2.7388 -7.8955 0.3856 17 8 2.6839 -8.2539 1.5430 18 6 3.5009 -8.7169 -0.6221 19 6 4.1039 -9.9414 0.0693 20 6 4.8771 -10.7757 -0.9540 21 1 5.6076 -10.1496 -1.4664 22 6 5.5922 -11.9426 -0.2457 23 6 5.0270 -13.2084 -0.9349 24 6 4.4972 -12.6389 -2.2756 25 1 5.3098 -12.5284 -2.9935 26 6 3.4128 -13.5226 -2.8359 27 7 3.7022 -14.7802 -3.2250 28 8 2.2796 -13.1024 -2.9367 29 8 3.9656 -11.3482 -1.9067 30 6 1.8743 -3.7234 -0.0862 31 1 -0.4850 0.8401 -0.0004 32 1 -0.2529 -1.7668 1.4353 33 1 -0.7518 -2.4136 -0.1567 34 1 0.2935 -3.9580 2.2805 35 1 -1.1430 -4.3149 1.2645 36 1 2.0551 -5.6384 1.7702 37 1 0.5795 -6.5673 1.4124 38 1 2.1626 -6.4759 -0.9248 39 1 2.8239 -9.0427 -1.4118 40 1 4.2991 -8.1132 -1.0540 41 1 4.7808 -9.6160 0.8592 42 1 3.3055 -10.5450 0.5008 43 1 6.6700 -11.8762 -0.3944 44 1 5.3525 -11.9479 0.8176 45 1 5.8148 -13.9416 -1.1079 46 1 4.2164 -13.6413 -0.3487 47 1 4.6086 -15.1163 -3.1446 48 1 3.0042 -15.3490 -3.5860 49 1 2.1251 -3.8190 -1.1427 50 1 2.7605 -3.8966 0.5244 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663603776.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:51 Heat of formation + Delta-G solvation = -142.449961 kcal Electronic energy + Delta-G solvation = -28922.805720 eV Core-core repulsion = 24755.551935 eV Total energy + Delta-G solvation = -4167.253785 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.31865 -40.76740 -39.50098 -39.19340 -36.04769 -34.90422 -34.50345 -34.27196 -32.92873 -31.70609 -30.35524 -29.51912 -27.40254 -26.16710 -24.83846 -23.31389 -22.22726 -21.85466 -21.53071 -21.40943 -20.84704 -18.86175 -18.63495 -18.03801 -17.89154 -17.35093 -17.25597 -16.83655 -16.72051 -16.39107 -15.98749 -15.72074 -15.57859 -15.49519 -14.67104 -14.66721 -14.42304 -14.29533 -14.11989 -13.89106 -13.53391 -13.36420 -13.16161 -13.03015 -12.84361 -12.72577 -12.68682 -12.62596 -12.04683 -12.02841 -11.93201 -11.86818 -11.86088 -11.64316 -11.56988 -11.48429 -11.04362 -10.82343 -10.71431 -10.67491 -10.58344 -10.05696 -8.82984 -7.89904 -5.26025 1.45155 1.46778 1.54639 1.56562 1.68393 2.18930 2.25529 2.48849 3.08788 3.29479 3.53569 3.62723 3.71005 3.79486 3.87429 3.92215 3.96112 3.99969 4.05418 4.15424 4.22124 4.33855 4.43979 4.45825 4.61660 4.64638 4.67975 4.74120 4.78097 4.84559 4.90747 4.91164 5.04831 5.05672 5.10316 5.11705 5.15818 5.31386 5.37095 5.43014 5.50537 5.59551 5.73093 5.80439 5.95914 6.20710 6.45863 6.58589 7.07552 7.27758 7.32526 7.75711 8.43490 9.22639 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022073 B = 0.001655 C = 0.001642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.205269 B =16914.458002 C =17043.712274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.063 4.063 3 Si 0.978 3.022 4 H -0.284 1.284 5 H -0.293 1.293 6 H -0.269 1.269 7 C -0.247 4.247 8 H 0.077 0.923 9 N -0.626 5.626 10 C 0.178 3.822 11 C -0.123 4.123 12 C -0.094 4.094 13 H 0.092 0.908 14 C 0.144 3.856 15 N -0.721 5.721 16 C 0.508 3.492 17 O -0.589 6.589 18 C -0.132 4.132 19 C -0.098 4.098 20 C 0.072 3.928 21 H 0.095 0.905 22 C -0.148 4.148 23 C -0.136 4.136 24 C 0.052 3.948 25 H 0.129 0.871 26 C 0.515 3.485 27 N -0.828 5.828 28 O -0.588 6.588 29 O -0.379 6.379 30 C 0.139 3.861 31 H 0.249 0.751 32 H 0.026 0.974 33 H 0.003 0.997 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.055 0.945 37 H 0.070 0.930 38 H 0.413 0.587 39 H 0.100 0.900 40 H 0.119 0.881 41 H 0.085 0.915 42 H 0.051 0.949 43 H 0.109 0.891 44 H 0.079 0.921 45 H 0.127 0.873 46 H 0.065 0.935 47 H 0.421 0.579 48 H 0.410 0.590 49 H 0.025 0.975 50 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.044 -33.193 -5.300 36.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.257 4.257 3 Si 0.806 3.194 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.194 1.194 7 C -0.376 4.376 8 H 0.095 0.905 9 N -0.353 5.353 10 C 0.053 3.947 11 C -0.162 4.162 12 C -0.113 4.113 13 H 0.111 0.889 14 C 0.020 3.980 15 N -0.372 5.372 16 C 0.297 3.703 17 O -0.470 6.470 18 C -0.172 4.172 19 C -0.136 4.136 20 C 0.014 3.986 21 H 0.112 0.888 22 C -0.186 4.186 23 C -0.174 4.174 24 C -0.009 4.009 25 H 0.146 0.854 26 C 0.300 3.700 27 N -0.394 5.394 28 O -0.467 6.467 29 O -0.298 6.298 30 C 0.014 3.986 31 H 0.058 0.942 32 H 0.044 0.956 33 H 0.021 0.979 34 H 0.085 0.915 35 H 0.108 0.892 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.249 0.751 39 H 0.119 0.881 40 H 0.137 0.863 41 H 0.104 0.896 42 H 0.070 0.930 43 H 0.127 0.873 44 H 0.098 0.902 45 H 0.145 0.855 46 H 0.084 0.916 47 H 0.253 0.747 48 H 0.242 0.758 49 H 0.043 0.957 50 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 14.133 -32.701 -4.552 35.914 hybrid contribution 0.026 1.117 -0.461 1.209 sum 14.159 -31.585 -5.013 34.974 Atomic orbital electron populations 1.70151 1.06444 1.25580 1.57349 1.25731 0.96524 1.01263 1.02186 0.85080 0.77827 0.79092 0.77417 1.21127 1.21906 1.19381 1.19381 0.91317 0.84188 1.42750 0.90550 1.44793 1.12671 1.01325 1.76468 1.21157 0.85460 0.93088 0.95008 1.22844 0.99963 0.95182 0.98222 1.22259 0.96538 0.93218 0.99268 0.88941 1.21163 0.95203 0.90565 0.91110 1.46059 1.53125 1.24400 1.13664 1.21326 0.78658 0.80826 0.89531 1.90664 1.63242 1.71403 1.21667 1.21669 1.01202 0.96777 0.97501 1.21501 1.00047 0.94805 0.97240 1.23021 0.90879 0.95448 0.89221 0.88761 1.23039 1.02102 0.92437 1.01009 1.23132 1.02000 0.99042 0.93218 1.23236 0.94117 0.84235 0.99281 0.85352 1.20755 0.89001 0.83489 0.76784 1.43565 1.16543 1.13263 1.66035 1.90780 1.24772 1.75059 1.56117 1.89021 1.48550 1.30793 1.61413 1.21496 0.95178 0.84659 0.97283 0.94230 0.95594 0.97919 0.91460 0.89208 0.92707 0.91211 0.75058 0.88129 0.86312 0.89636 0.93020 0.87272 0.90213 0.85453 0.91603 0.74658 0.75798 0.95668 0.95772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.83 10.82 21.65 0.23 -57.60 16 2 C -0.06 -3.67 5.39 84.86 0.46 -3.21 16 3 Si 0.98 46.27 29.56 68.60 2.03 48.30 16 4 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 5 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 7 C -0.25 -14.16 10.22 84.03 0.86 -13.30 16 8 H 0.08 4.21 7.84 -2.91 -0.02 4.18 16 9 N -0.63 -32.77 3.39 -691.97 -2.35 -35.12 16 10 C 0.18 8.86 5.37 86.85 0.47 9.33 16 11 C -0.12 -4.50 6.54 31.98 0.21 -4.29 16 12 C -0.09 -3.06 2.95 -9.60 -0.03 -3.09 16 13 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 14 C 0.14 4.21 5.02 86.38 0.43 4.64 16 15 N -0.72 -18.29 5.47 -463.05 -2.53 -20.82 16 16 C 0.51 13.65 7.83 87.66 0.69 14.34 16 17 O -0.59 -20.47 15.98 -3.05 -0.05 -20.52 16 18 C -0.13 -2.54 5.62 29.85 0.17 -2.37 16 19 C -0.10 -1.81 3.99 30.60 0.12 -1.69 16 20 C 0.07 0.94 3.41 30.97 0.11 1.05 16 21 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 22 C -0.15 -1.10 6.64 31.58 0.21 -0.89 16 23 C -0.14 -0.82 6.57 31.89 0.21 -0.61 16 24 C 0.05 0.57 3.76 30.53 0.11 0.69 16 25 H 0.13 0.57 8.14 -2.39 -0.02 0.55 16 26 C 0.52 8.13 7.48 87.66 0.66 8.79 16 27 N -0.83 -4.13 8.86 -173.53 -1.54 -5.66 16 28 O -0.59 -17.04 17.41 15.12 0.26 -16.77 16 29 O -0.38 -7.27 10.13 -130.83 -1.33 -8.60 16 30 C 0.14 5.65 6.76 86.73 0.59 6.23 16 31 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 32 H 0.03 1.45 7.19 -2.38 -0.02 1.43 16 33 H 0.00 0.15 7.98 -2.39 -0.02 0.13 16 34 H 0.07 2.41 8.05 -2.39 -0.02 2.39 16 35 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 36 H 0.05 1.78 7.94 -2.39 -0.02 1.76 16 37 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 38 H 0.41 8.65 8.47 -92.71 -0.79 7.87 16 39 H 0.10 1.99 7.91 -2.39 -0.02 1.97 16 40 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.09 1.53 8.10 -2.39 -0.02 1.51 16 42 H 0.05 1.23 8.10 -2.39 -0.02 1.21 16 43 H 0.11 0.24 8.14 -2.38 -0.02 0.22 16 44 H 0.08 0.73 7.70 -2.39 -0.02 0.71 16 45 H 0.13 -0.25 8.14 -2.39 -0.02 -0.27 16 46 H 0.07 0.64 8.05 -2.39 -0.02 0.62 16 47 H 0.42 -1.38 8.83 -92.71 -0.82 -2.20 16 48 H 0.41 1.77 8.93 -92.70 -0.83 0.94 16 49 H 0.03 1.00 8.14 -2.38 -0.02 0.99 16 50 H 0.02 0.99 7.69 -2.39 -0.02 0.97 16 Total: -1.00 -87.74 404.86 -1.48 -89.22 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -1.47 Total: 11.96 kcal Atomic # 6 Polarization: 10.37 SS G_CDS: 5.25 Total: 15.62 kcal Atomic # 7 Polarization: -113.02 SS G_CDS: -6.18 Total: -119.20 kcal Atomic # 8 Polarization: -44.78 SS G_CDS: -1.11 Total: -45.89 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -87.74 -1.48 -89.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663603776.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.234 kcal (2) G-P(sol) polarization free energy of solvation -87.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds