Wall clock time and date at job start Sat Apr 11 2020 05:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 120.00008 * 2 1 4 4 H 1.48507 * 109.46907 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47107 * 300.00257 * 3 2 1 6 6 H 1.48504 * 109.47037 * 60.00471 * 3 2 1 7 7 C 1.38809 * 120.00091 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00709 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00023 * 359.97438 * 7 2 1 10 10 C 1.47430 * 125.64739 * 359.97438 * 9 7 2 11 11 C 1.54906 * 104.83347 * 155.90596 * 10 9 7 12 12 C 1.55158 * 101.58423 * 37.00824 * 11 10 9 13 13 H 1.09002 * 110.71874 * 83.03862 * 12 11 10 14 14 C 1.52994 * 110.72090 * 206.13539 * 12 11 10 15 15 N 1.46502 * 109.47131 * 184.99668 * 14 12 11 16 16 C 1.34776 * 119.99976 * 179.97438 * 15 14 12 17 17 O 1.21276 * 120.00418 * 0.02562 * 16 15 14 18 18 C 1.50700 * 119.99866 * 180.02562 * 16 15 14 19 19 C 1.53004 * 109.47380 * 180.02562 * 18 16 15 20 20 C 1.52992 * 109.47148 * 179.97438 * 19 18 16 21 21 H 1.09001 * 109.87499 * 54.55484 * 20 19 18 22 22 C 1.54108 * 109.87624 * 175.71232 * 20 19 18 23 23 C 1.54820 * 104.18309 * 121.45284 * 22 20 19 24 24 C 1.54992 * 102.09237 * 20.88294 * 23 22 20 25 25 H 1.09000 * 110.75226 * 81.54548 * 24 23 22 26 26 C 1.50702 * 110.61384 * 204.47409 * 24 23 22 27 27 N 1.34777 * 119.99928 * 290.24553 * 26 24 23 28 28 O 1.21283 * 120.00262 * 110.52647 * 26 24 23 29 29 O 1.43746 * 109.88181 * 293.54251 * 20 19 18 30 30 C 1.47024 * 125.65187 * 180.02562 * 9 7 2 31 31 H 0.97008 * 119.99678 * 359.97438 * 1 2 3 32 32 H 1.08999 * 110.36803 * 37.06497 * 10 9 7 33 33 H 1.09005 * 110.36409 * 274.74775 * 10 9 7 34 34 H 1.08997 * 111.00395 * 278.93091 * 11 10 9 35 35 H 1.09006 * 111.03540 * 155.09743 * 11 10 9 36 36 H 1.08997 * 109.47440 * 65.00027 * 14 12 11 37 37 H 1.09002 * 109.47096 * 305.00083 * 14 12 11 38 38 H 0.97003 * 119.99905 * 0.02562 * 15 14 12 39 39 H 1.08992 * 109.47465 * 59.99871 * 18 16 15 40 40 H 1.09002 * 109.47210 * 300.00233 * 18 16 15 41 41 H 1.09002 * 109.46865 * 59.99773 * 19 18 16 42 42 H 1.09002 * 109.46858 * 300.00104 * 19 18 16 43 43 H 1.08994 * 110.48742 * 240.12537 * 22 20 19 44 44 H 1.08995 * 110.48601 * 2.78352 * 22 20 19 45 45 H 1.08998 * 110.90368 * 262.67798 * 23 22 20 46 46 H 1.09005 * 110.89977 * 139.08196 * 23 22 20 47 47 H 0.96999 * 120.00047 * 180.27521 * 27 26 24 48 48 H 0.97000 * 120.00317 * 0.28382 * 27 26 24 49 49 H 1.08999 * 109.88044 * 61.60561 * 30 9 7 50 50 H 1.09007 * 109.87966 * 300.43807 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1416 -2.5331 0.0005 11 6 -0.4022 -3.9322 -0.6112 12 6 0.7783 -4.7524 -0.0271 13 1 0.5452 -5.1007 0.9792 14 6 1.1223 -5.9312 -0.9397 15 7 2.1564 -6.7534 -0.3065 16 6 2.6188 -7.8542 -0.9318 17 8 2.1791 -8.1639 -2.0189 18 6 3.6822 -8.7002 -0.2803 19 6 4.0263 -9.8790 -1.1929 20 6 5.1063 -10.7375 -0.5317 21 1 4.7830 -11.0367 0.4654 22 6 5.3836 -11.9854 -1.3924 23 6 6.8920 -11.8879 -1.7270 24 6 7.4114 -10.9439 -0.6129 25 1 7.5847 -11.4956 0.3111 26 6 8.6706 -10.2438 -1.0550 27 7 9.8157 -10.9407 -1.1943 28 8 8.6546 -9.0522 -1.2807 29 8 6.3350 -9.9965 -0.4453 30 6 1.9317 -3.7275 -0.0005 31 1 -0.4850 0.8401 0.0004 32 1 -0.5999 -1.7588 -0.6146 33 1 -0.5266 -2.4868 1.0193 34 1 -0.3534 -3.8980 -1.6995 35 1 -1.3594 -4.3331 -0.2775 36 1 1.4905 -5.5562 -1.8945 37 1 0.2297 -6.5345 -1.1060 38 1 2.5078 -6.5059 0.5631 39 1 3.3138 -9.0750 0.6746 40 1 4.5749 -8.0972 -0.1139 41 1 4.3949 -9.5038 -2.1477 42 1 3.1338 -10.4821 -1.3596 43 1 5.1764 -12.8933 -0.8260 44 1 4.7880 -11.9594 -2.3049 45 1 7.0441 -11.4475 -2.7124 46 1 7.3688 -12.8660 -1.6618 47 1 10.6271 -10.4893 -1.4750 48 1 9.8286 -11.8937 -1.0138 49 1 2.5286 -3.8642 0.9012 50 1 2.5577 -3.8511 -0.8844 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663603777.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:57 Heat of formation + Delta-G solvation = -109.061967 kcal Electronic energy + Delta-G solvation = -29038.447909 eV Core-core repulsion = 24872.641937 eV Total energy + Delta-G solvation = -4165.805973 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.72015 -39.64616 -38.76249 -37.59639 -34.61096 -34.26883 -33.72720 -32.52636 -32.39466 -30.02718 -29.26247 -28.09774 -25.87512 -24.98162 -23.51818 -22.57491 -21.31945 -20.99423 -20.54695 -19.87648 -19.45112 -18.14188 -17.47763 -17.16396 -16.81630 -16.46910 -16.15997 -15.90818 -15.33172 -15.08793 -14.92976 -14.79615 -14.54479 -13.95024 -13.77639 -13.54668 -13.48667 -13.36416 -12.56849 -12.45331 -12.42889 -12.29432 -12.09390 -11.73128 -11.66209 -11.47268 -11.43997 -11.25839 -11.02654 -10.90855 -10.78469 -10.39112 -10.35894 -10.17153 -10.07839 -10.00326 -9.95905 -9.84159 -9.65190 -9.43339 -8.85908 -8.61670 -6.79163 -5.61822 -3.03162 2.15399 2.66784 2.78576 3.33298 3.42883 3.48506 3.51098 3.57762 3.95828 4.20787 4.34263 4.43301 4.52523 4.57151 4.69492 4.75083 4.94123 5.06051 5.10905 5.18622 5.25112 5.28967 5.31976 5.39610 5.45318 5.55059 5.57081 5.59767 5.76222 5.85300 5.94561 6.05131 6.13264 6.18151 6.25461 6.40029 6.43789 6.53851 6.61994 6.63103 6.78895 6.82991 6.96753 7.54977 7.65845 7.67616 7.81194 7.89280 8.36457 8.40263 9.26200 9.87099 10.52002 11.42274 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014232 B = 0.001919 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.953617 B =14586.777711 C =16278.243824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.013 4.013 3 Si 0.914 3.086 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.220 4.220 8 H 0.078 0.922 9 N -0.605 5.605 10 C 0.152 3.848 11 C -0.135 4.135 12 C -0.114 4.114 13 H 0.075 0.925 14 C 0.132 3.868 15 N -0.726 5.726 16 C 0.511 3.489 17 O -0.550 6.550 18 C -0.140 4.140 19 C -0.100 4.100 20 C 0.073 3.927 21 H 0.075 0.925 22 C -0.150 4.150 23 C -0.143 4.143 24 C 0.057 3.943 25 H 0.096 0.904 26 C 0.520 3.480 27 N -0.854 5.854 28 O -0.515 6.515 29 O -0.340 6.340 30 C 0.141 3.859 31 H 0.251 0.749 32 H 0.107 0.893 33 H 0.012 0.988 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.401 0.599 39 H 0.091 0.909 40 H 0.101 0.899 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.087 0.913 45 H 0.083 0.917 46 H 0.087 0.913 47 H 0.406 0.594 48 H 0.401 0.599 49 H 0.019 0.981 50 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.333 -31.445 0.650 34.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.209 4.209 3 Si 0.745 3.255 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.349 4.349 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.027 3.973 11 C -0.175 4.175 12 C -0.133 4.133 13 H 0.094 0.906 14 C 0.008 3.992 15 N -0.377 5.377 16 C 0.297 3.703 17 O -0.428 6.428 18 C -0.180 4.180 19 C -0.138 4.138 20 C 0.015 3.985 21 H 0.093 0.907 22 C -0.188 4.188 23 C -0.181 4.181 24 C -0.004 4.004 25 H 0.114 0.886 26 C 0.303 3.697 27 N -0.420 5.420 28 O -0.388 6.388 29 O -0.259 6.259 30 C 0.015 3.985 31 H 0.062 0.938 32 H 0.125 0.875 33 H 0.030 0.970 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.236 0.764 39 H 0.109 0.891 40 H 0.120 0.880 41 H 0.098 0.902 42 H 0.102 0.898 43 H 0.099 0.901 44 H 0.105 0.895 45 H 0.102 0.898 46 H 0.106 0.894 47 H 0.237 0.763 48 H 0.229 0.771 49 H 0.036 0.964 50 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 12.768 -30.385 -0.200 32.959 hybrid contribution 1.015 0.445 0.570 1.246 sum 13.783 -29.940 0.370 32.962 Atomic orbital electron populations 1.69810 1.04878 1.24594 1.57899 1.24793 0.95754 0.97740 1.02580 0.85992 0.78689 0.83598 0.77211 1.20518 1.21745 1.21790 1.19139 0.90554 0.82493 1.42673 0.90463 1.44524 1.01998 0.99771 1.86808 1.21933 0.84699 0.92527 0.98151 1.23007 0.95520 0.98624 1.00325 1.22439 0.98248 0.94068 0.98572 0.90637 1.21442 0.90145 0.91044 0.96531 1.46127 1.41744 1.26639 1.23237 1.20682 0.82829 0.81117 0.85647 1.90679 1.59751 1.71304 1.21044 1.21647 0.98768 0.97644 0.99975 1.21528 0.97218 0.95775 0.99264 1.22934 0.85662 0.91135 0.98751 0.90709 1.23009 0.95864 0.98420 1.01506 1.23101 0.96170 0.99621 0.99222 1.22949 0.88119 0.90323 0.99029 0.88627 1.20262 0.84777 0.87442 0.77226 1.43742 1.11816 1.13311 1.73161 1.90829 1.85088 1.14871 1.48048 1.89066 1.13101 1.30202 1.93494 1.21343 0.93471 0.85905 0.97783 0.93824 0.87540 0.97040 0.91862 0.92175 0.91344 0.91798 0.76449 0.89110 0.88023 0.90177 0.89789 0.90060 0.89463 0.89799 0.89406 0.76283 0.77118 0.96360 0.95741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.42 10.09 55.49 0.56 -26.86 16 2 C -0.01 -0.39 5.49 -17.43 -0.10 -0.49 16 3 Si 0.91 22.63 29.55 -169.99 -5.02 17.60 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 7 C -0.22 -6.32 10.27 -15.06 -0.15 -6.47 16 8 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 9 N -0.60 -15.90 3.39 -170.06 -0.58 -16.48 16 10 C 0.15 3.75 5.89 -2.53 -0.01 3.73 16 11 C -0.14 -2.59 6.53 -24.58 -0.16 -2.75 16 12 C -0.11 -1.97 2.96 -88.79 -0.26 -2.23 16 13 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 14 C 0.13 2.06 5.02 -4.04 -0.02 2.03 16 15 N -0.73 -9.83 5.47 -60.30 -0.33 -10.16 16 16 C 0.51 7.13 7.83 -10.99 -0.09 7.05 16 17 O -0.55 -9.66 15.98 5.56 0.09 -9.57 16 18 C -0.14 -1.44 5.61 -27.88 -0.16 -1.60 16 19 C -0.10 -0.96 3.99 -26.73 -0.11 -1.07 16 20 C 0.07 0.55 3.41 -26.16 -0.09 0.46 16 21 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 22 C -0.15 -0.76 6.64 -25.19 -0.17 -0.93 16 23 C -0.14 -0.67 6.57 -24.72 -0.16 -0.83 16 24 C 0.06 0.39 3.76 -26.83 -0.10 0.29 16 25 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 26 C 0.52 4.58 7.47 -10.98 -0.08 4.50 16 27 N -0.85 -3.34 8.87 31.22 0.28 -3.06 16 28 O -0.52 -7.60 17.41 -13.49 -0.23 -7.83 16 29 O -0.34 -3.54 10.09 -54.27 -0.55 -4.09 16 30 C 0.14 2.99 6.75 -3.06 -0.02 2.97 16 31 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.11 2.96 5.87 -51.93 -0.30 2.65 16 33 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 1.21 8.05 -51.93 -0.42 0.80 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.07 1.20 7.93 -51.93 -0.41 0.79 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.40 4.61 8.47 -40.82 -0.35 4.27 16 39 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.10 1.11 7.88 -51.93 -0.41 0.70 16 41 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 42 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 43 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 44 H 0.09 0.47 7.70 -51.93 -0.40 0.07 16 45 H 0.08 0.51 8.05 -51.93 -0.42 0.09 16 46 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 47 H 0.41 1.39 8.93 -40.82 -0.36 1.02 16 48 H 0.40 0.12 8.83 -40.82 -0.36 -0.24 16 49 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.02 0.54 7.68 -51.93 -0.40 0.14 16 LS Contribution 403.54 15.07 6.08 6.08 Total: -1.00 -38.50 403.54 -9.83 -48.33 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -8.45 Total: 1.38 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: -1.68 Total: 4.67 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: -0.07 Total: -56.56 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.69 Total: -21.50 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -38.50 -9.83 -48.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663603777.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.731 kcal (2) G-P(sol) polarization free energy of solvation -38.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds