Wall clock time and date at job start Sat Apr 11 2020 05:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 120.00008 * 2 1 4 4 H 1.48507 * 109.46907 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47107 * 300.00257 * 3 2 1 6 6 H 1.48504 * 109.47037 * 60.00471 * 3 2 1 7 7 C 1.38809 * 120.00091 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00709 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00023 * 359.97438 * 7 2 1 10 10 C 1.47430 * 125.64739 * 359.97438 * 9 7 2 11 11 C 1.54906 * 104.83347 * 155.90596 * 10 9 7 12 12 C 1.55158 * 101.58423 * 37.00824 * 11 10 9 13 13 H 1.09002 * 110.71874 * 83.03862 * 12 11 10 14 14 C 1.52994 * 110.72090 * 206.13539 * 12 11 10 15 15 N 1.46502 * 109.47131 * 184.99668 * 14 12 11 16 16 C 1.34776 * 119.99976 * 179.97438 * 15 14 12 17 17 O 1.21276 * 120.00418 * 0.02562 * 16 15 14 18 18 C 1.50700 * 119.99866 * 180.02562 * 16 15 14 19 19 C 1.53004 * 109.47380 * 180.02562 * 18 16 15 20 20 C 1.52992 * 109.47148 * 179.97438 * 19 18 16 21 21 H 1.09001 * 109.87499 * 54.55484 * 20 19 18 22 22 C 1.54108 * 109.87624 * 175.71232 * 20 19 18 23 23 C 1.54820 * 104.18309 * 121.45284 * 22 20 19 24 24 C 1.54992 * 102.09237 * 20.88294 * 23 22 20 25 25 H 1.09000 * 110.75226 * 81.54548 * 24 23 22 26 26 C 1.50702 * 110.61384 * 204.47409 * 24 23 22 27 27 N 1.34777 * 119.99928 * 290.24553 * 26 24 23 28 28 O 1.21283 * 120.00262 * 110.52647 * 26 24 23 29 29 O 1.43746 * 109.88181 * 293.54251 * 20 19 18 30 30 C 1.47024 * 125.65187 * 180.02562 * 9 7 2 31 31 H 0.97008 * 119.99678 * 359.97438 * 1 2 3 32 32 H 1.08999 * 110.36803 * 37.06497 * 10 9 7 33 33 H 1.09005 * 110.36409 * 274.74775 * 10 9 7 34 34 H 1.08997 * 111.00395 * 278.93091 * 11 10 9 35 35 H 1.09006 * 111.03540 * 155.09743 * 11 10 9 36 36 H 1.08997 * 109.47440 * 65.00027 * 14 12 11 37 37 H 1.09002 * 109.47096 * 305.00083 * 14 12 11 38 38 H 0.97003 * 119.99905 * 0.02562 * 15 14 12 39 39 H 1.08992 * 109.47465 * 59.99871 * 18 16 15 40 40 H 1.09002 * 109.47210 * 300.00233 * 18 16 15 41 41 H 1.09002 * 109.46865 * 59.99773 * 19 18 16 42 42 H 1.09002 * 109.46858 * 300.00104 * 19 18 16 43 43 H 1.08994 * 110.48742 * 240.12537 * 22 20 19 44 44 H 1.08995 * 110.48601 * 2.78352 * 22 20 19 45 45 H 1.08998 * 110.90368 * 262.67798 * 23 22 20 46 46 H 1.09005 * 110.89977 * 139.08196 * 23 22 20 47 47 H 0.96999 * 120.00047 * 180.27521 * 27 26 24 48 48 H 0.97000 * 120.00317 * 0.28382 * 27 26 24 49 49 H 1.08999 * 109.88044 * 61.60561 * 30 9 7 50 50 H 1.09007 * 109.87966 * 300.43807 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1416 -2.5331 0.0005 11 6 -0.4022 -3.9322 -0.6112 12 6 0.7783 -4.7524 -0.0271 13 1 0.5452 -5.1007 0.9792 14 6 1.1223 -5.9312 -0.9397 15 7 2.1564 -6.7534 -0.3065 16 6 2.6188 -7.8542 -0.9318 17 8 2.1791 -8.1639 -2.0189 18 6 3.6822 -8.7002 -0.2803 19 6 4.0263 -9.8790 -1.1929 20 6 5.1063 -10.7375 -0.5317 21 1 4.7830 -11.0367 0.4654 22 6 5.3836 -11.9854 -1.3924 23 6 6.8920 -11.8879 -1.7270 24 6 7.4114 -10.9439 -0.6129 25 1 7.5847 -11.4956 0.3111 26 6 8.6706 -10.2438 -1.0550 27 7 9.8157 -10.9407 -1.1943 28 8 8.6546 -9.0522 -1.2807 29 8 6.3350 -9.9965 -0.4453 30 6 1.9317 -3.7275 -0.0005 31 1 -0.4850 0.8401 0.0004 32 1 -0.5999 -1.7588 -0.6146 33 1 -0.5266 -2.4868 1.0193 34 1 -0.3534 -3.8980 -1.6995 35 1 -1.3594 -4.3331 -0.2775 36 1 1.4905 -5.5562 -1.8945 37 1 0.2297 -6.5345 -1.1060 38 1 2.5078 -6.5059 0.5631 39 1 3.3138 -9.0750 0.6746 40 1 4.5749 -8.0972 -0.1139 41 1 4.3949 -9.5038 -2.1477 42 1 3.1338 -10.4821 -1.3596 43 1 5.1764 -12.8933 -0.8260 44 1 4.7880 -11.9594 -2.3049 45 1 7.0441 -11.4475 -2.7124 46 1 7.3688 -12.8660 -1.6618 47 1 10.6271 -10.4893 -1.4750 48 1 9.8286 -11.8937 -1.0138 49 1 2.5286 -3.8642 0.9012 50 1 2.5577 -3.8511 -0.8844 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663603777.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:56 Heat of formation + Delta-G solvation = -139.323500 kcal Electronic energy + Delta-G solvation = -29039.760148 eV Core-core repulsion = 24872.641937 eV Total energy + Delta-G solvation = -4167.118211 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.32507 -40.77443 -39.50612 -39.19806 -36.07144 -34.90150 -34.50878 -34.27429 -32.94935 -31.70678 -30.35816 -29.49551 -27.40198 -26.18565 -24.85543 -23.31774 -22.18441 -21.85204 -21.54350 -21.41225 -20.84697 -18.92216 -18.64166 -18.06731 -17.92728 -17.35392 -17.21787 -16.88899 -16.71496 -16.38492 -15.93810 -15.71823 -15.56135 -15.51435 -14.71715 -14.62568 -14.43465 -14.29709 -14.12354 -13.82196 -13.56537 -13.37387 -13.14638 -13.03031 -12.84464 -12.81396 -12.71399 -12.63039 -12.05559 -11.99671 -11.91811 -11.86682 -11.84414 -11.60831 -11.56973 -11.39302 -11.05210 -10.81784 -10.75392 -10.72517 -10.58346 -10.06495 -8.89655 -7.79401 -5.23552 1.44610 1.45823 1.53127 1.56280 1.67693 2.19496 2.25413 2.47861 3.08955 3.29853 3.53053 3.62057 3.71136 3.79296 3.86677 3.92751 3.97887 3.99549 4.06506 4.14878 4.21756 4.33253 4.43895 4.46030 4.61150 4.64563 4.69340 4.73473 4.77263 4.83748 4.89806 4.90738 5.04556 5.05600 5.10940 5.12468 5.15805 5.31573 5.35270 5.44636 5.49830 5.65356 5.80040 5.81480 5.95678 6.30573 6.45528 6.58348 7.09967 7.27573 7.32115 7.77299 8.40718 9.22600 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014232 B = 0.001919 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.953617 B =14586.777711 C =16278.243824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.069 4.069 3 Si 0.981 3.019 4 H -0.269 1.269 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.239 4.239 8 H 0.077 0.923 9 N -0.629 5.629 10 C 0.152 3.848 11 C -0.123 4.123 12 C -0.092 4.092 13 H 0.099 0.901 14 C 0.143 3.857 15 N -0.720 5.720 16 C 0.507 3.493 17 O -0.589 6.589 18 C -0.131 4.131 19 C -0.099 4.099 20 C 0.072 3.928 21 H 0.099 0.901 22 C -0.147 4.147 23 C -0.137 4.137 24 C 0.053 3.947 25 H 0.132 0.868 26 C 0.513 3.487 27 N -0.828 5.828 28 O -0.589 6.589 29 O -0.381 6.381 30 C 0.137 3.863 31 H 0.247 0.753 32 H 0.071 0.929 33 H -0.007 1.007 34 H 0.060 0.940 35 H 0.092 0.908 36 H 0.045 0.955 37 H 0.076 0.924 38 H 0.413 0.587 39 H 0.126 0.874 40 H 0.095 0.905 41 H 0.046 0.954 42 H 0.089 0.911 43 H 0.112 0.888 44 H 0.078 0.922 45 H 0.061 0.939 46 H 0.128 0.872 47 H 0.410 0.590 48 H 0.422 0.578 49 H 0.028 0.972 50 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.258 -34.730 2.015 37.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.261 4.261 3 Si 0.809 3.191 4 H -0.194 1.194 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.368 4.368 8 H 0.095 0.905 9 N -0.355 5.355 10 C 0.027 3.973 11 C -0.162 4.162 12 C -0.111 4.111 13 H 0.118 0.882 14 C 0.019 3.981 15 N -0.372 5.372 16 C 0.296 3.704 17 O -0.470 6.470 18 C -0.171 4.171 19 C -0.137 4.137 20 C 0.014 3.986 21 H 0.117 0.883 22 C -0.185 4.185 23 C -0.174 4.174 24 C -0.008 4.008 25 H 0.149 0.851 26 C 0.298 3.702 27 N -0.394 5.394 28 O -0.469 6.469 29 O -0.300 6.300 30 C 0.012 3.988 31 H 0.057 0.943 32 H 0.089 0.911 33 H 0.011 0.989 34 H 0.078 0.922 35 H 0.110 0.890 36 H 0.064 0.936 37 H 0.094 0.906 38 H 0.250 0.750 39 H 0.144 0.856 40 H 0.113 0.887 41 H 0.065 0.935 42 H 0.108 0.892 43 H 0.130 0.870 44 H 0.097 0.903 45 H 0.080 0.920 46 H 0.146 0.854 47 H 0.241 0.759 48 H 0.254 0.746 49 H 0.046 0.954 50 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 13.746 -33.761 1.191 36.471 hybrid contribution 0.787 1.423 0.133 1.632 sum 14.532 -32.337 1.324 35.477 Atomic orbital electron populations 1.70060 1.06116 1.24966 1.58632 1.25645 0.96730 1.00992 1.02760 0.84975 0.77963 0.79316 0.76860 1.19384 1.21760 1.21596 1.19473 0.90923 0.83966 1.42487 0.90519 1.44845 1.02931 1.00932 1.86792 1.21743 0.83939 0.94905 0.96729 1.22855 0.97878 0.95528 0.99910 1.22280 0.95529 0.93241 1.00074 0.88235 1.21169 0.91100 0.90715 0.95115 1.46056 1.41249 1.26257 1.23648 1.21350 0.82899 0.81044 0.85112 1.90661 1.61232 1.72297 1.22835 1.21666 0.97028 0.97141 1.01251 1.21515 0.98315 0.95974 0.97867 1.23051 0.84166 0.91183 1.00153 0.88337 1.23040 0.95794 0.98431 1.01201 1.23128 0.96243 1.00789 0.97280 1.23251 0.86367 0.89942 1.01202 0.85080 1.20830 0.86407 0.86759 0.76247 1.43564 1.10647 1.14275 1.70931 1.90794 1.86324 1.18000 1.51742 1.89031 1.14719 1.32522 1.93760 1.21511 0.94856 0.84883 0.97579 0.94279 0.91098 0.98937 0.92157 0.88976 0.93634 0.90588 0.75029 0.85646 0.88700 0.93540 0.89229 0.86964 0.90299 0.91970 0.85403 0.75865 0.74612 0.95408 0.96682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.85 10.09 21.65 0.22 -57.63 16 2 C -0.07 -4.04 5.49 84.86 0.47 -3.57 16 3 Si 0.98 47.24 29.55 68.60 2.03 49.27 16 4 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 5 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 6 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 7 C -0.24 -13.99 10.27 84.03 0.86 -13.12 16 8 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 9 N -0.63 -33.58 3.39 -691.96 -2.35 -35.93 16 10 C 0.15 7.63 5.89 86.85 0.51 8.14 16 11 C -0.12 -4.57 6.53 31.99 0.21 -4.36 16 12 C -0.09 -3.03 2.96 -9.61 -0.03 -3.06 16 13 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 14 C 0.14 4.27 5.02 86.38 0.43 4.71 16 15 N -0.72 -18.44 5.47 -463.07 -2.53 -20.97 16 16 C 0.51 13.79 7.83 87.66 0.69 14.47 16 17 O -0.59 -20.78 15.98 -3.02 -0.05 -20.83 16 18 C -0.13 -2.53 5.61 29.85 0.17 -2.37 16 19 C -0.10 -1.84 3.99 30.59 0.12 -1.72 16 20 C 0.07 0.94 3.41 30.97 0.11 1.04 16 21 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 22 C -0.15 -1.10 6.64 31.59 0.21 -0.89 16 23 C -0.14 -0.93 6.57 31.90 0.21 -0.72 16 24 C 0.05 0.62 3.76 30.53 0.11 0.74 16 25 H 0.13 0.58 8.14 -2.39 -0.02 0.56 16 26 C 0.51 8.80 7.47 87.66 0.65 9.45 16 27 N -0.83 -5.11 8.87 -173.53 -1.54 -6.65 16 28 O -0.59 -18.26 17.41 15.17 0.26 -18.00 16 29 O -0.38 -7.63 10.09 -130.77 -1.32 -8.95 16 30 C 0.14 5.76 6.75 86.73 0.59 6.35 16 31 H 0.25 14.58 8.31 -92.70 -0.77 13.80 16 32 H 0.07 4.09 5.87 -2.39 -0.01 4.07 16 33 H -0.01 -0.39 8.14 -2.38 -0.02 -0.41 16 34 H 0.06 2.28 8.05 -2.39 -0.02 2.26 16 35 H 0.09 2.86 8.14 -2.38 -0.02 2.84 16 36 H 0.05 1.59 7.93 -2.39 -0.02 1.57 16 37 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.41 8.62 8.47 -92.71 -0.79 7.84 16 39 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.09 2.02 7.88 -2.39 -0.02 2.01 16 41 H 0.05 1.16 8.10 -2.39 -0.02 1.14 16 42 H 0.09 1.53 8.10 -2.39 -0.02 1.51 16 43 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 44 H 0.08 0.73 7.70 -2.39 -0.02 0.71 16 45 H 0.06 0.71 8.05 -2.39 -0.02 0.69 16 46 H 0.13 -0.17 8.14 -2.38 -0.02 -0.19 16 47 H 0.41 2.34 8.93 -92.71 -0.83 1.52 16 48 H 0.42 -1.03 8.83 -92.71 -0.82 -1.84 16 49 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 50 H 0.02 0.67 7.68 -2.38 -0.02 0.65 16 Total: -1.00 -89.46 403.54 -1.43 -90.89 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -1.46 Total: 13.72 kcal Atomic # 6 Polarization: 9.78 SS G_CDS: 5.31 Total: 15.09 kcal Atomic # 7 Polarization: -114.98 SS G_CDS: -6.20 Total: -121.19 kcal Atomic # 8 Polarization: -46.67 SS G_CDS: -1.10 Total: -47.78 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.27 kcal Total: -89.46 -1.43 -90.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663603777.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.431 kcal (2) G-P(sol) polarization free energy of solvation -89.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds