Wall clock time and date at job start Sat Apr 11 2020 05:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00105 * 2 1 4 4 H 1.48499 * 109.47459 * 239.99306 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47211 * 119.99744 * 3 2 1 7 7 C 1.38950 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00299 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00030 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99773 * 180.27703 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.71934 * 10 9 7 12 12 C 1.50698 * 119.99538 * 179.72591 * 10 9 7 13 13 N 1.46899 * 109.46987 * 179.97438 * 12 10 9 14 14 C 1.46896 * 111.00338 * 179.97438 * 13 12 10 15 15 H 1.08997 * 110.88643 * 322.57095 * 14 13 12 16 16 C 1.55153 * 111.00623 * 86.44849 * 14 13 12 17 17 C 1.54326 * 102.94533 * 153.57854 * 16 14 13 18 18 N 1.47021 * 107.26858 * 337.80993 * 17 16 14 19 19 C 1.34774 * 125.64718 * 178.95956 * 18 17 16 20 20 O 1.21292 * 120.00232 * 179.97438 * 19 18 17 21 21 C 1.50703 * 120.00262 * 359.97438 * 19 18 17 22 22 C 1.53003 * 109.47272 * 179.97438 * 21 19 18 23 23 C 1.52996 * 109.46830 * 180.02562 * 22 21 19 24 24 H 1.08999 * 110.33130 * 307.24680 * 23 22 21 25 25 C 1.54485 * 110.37045 * 184.99849 * 23 22 21 26 26 C 1.54501 * 104.06197 * 217.18682 * 25 23 22 27 27 C 1.54470 * 104.06508 * 0.02562 * 26 25 23 28 28 O 1.44420 * 110.37781 * 69.61867 * 23 22 21 29 29 C 1.47425 * 108.70737 * 358.93854 * 18 17 16 30 30 H 0.96999 * 119.99863 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99681 * 359.97438 * 9 7 2 32 32 H 1.09003 * 109.47112 * 299.99065 * 12 10 9 33 33 H 1.08993 * 109.47916 * 59.99687 * 12 10 9 34 34 H 1.00900 * 111.00047 * 303.95165 * 13 12 10 35 35 H 1.09005 * 110.72307 * 271.94307 * 16 14 13 36 36 H 1.09000 * 110.72282 * 35.03841 * 16 14 13 37 37 H 1.09003 * 109.88309 * 97.22209 * 17 16 14 38 38 H 1.08999 * 109.88725 * 218.39112 * 17 16 14 39 39 H 1.09001 * 109.46746 * 300.00168 * 21 19 18 40 40 H 1.08996 * 109.46774 * 59.99968 * 21 19 18 41 41 H 1.08999 * 109.46943 * 300.00072 * 22 21 19 42 42 H 1.08993 * 109.46923 * 59.99570 * 22 21 19 43 43 H 1.08996 * 110.50882 * 335.83611 * 25 23 22 44 44 H 1.09002 * 110.50650 * 98.40454 * 25 23 22 45 45 H 1.09003 * 110.51162 * 118.65018 * 26 25 23 46 46 H 1.08997 * 110.51318 * 241.21682 * 26 25 23 47 47 H 1.08998 * 110.37388 * 142.81051 * 27 26 25 48 48 H 1.09003 * 110.37570 * 265.14631 * 27 26 25 49 49 H 1.08999 * 110.36850 * 265.29408 * 29 18 17 50 50 H 1.08997 * 110.37069 * 142.96689 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1020 1.6963 -1.2124 5 1 1.2832 2.7465 -0.0006 6 1 3.1019 1.6964 1.2126 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0067 11 8 3.2102 -3.5580 0.0071 12 6 1.2437 -4.8629 0.0129 13 7 2.1982 -5.9795 0.0184 14 6 1.4980 -7.2708 0.0252 15 1 0.6020 -7.2237 0.6441 16 6 1.1536 -7.7243 -1.4181 17 6 1.0910 -9.2611 -1.2919 18 7 1.8743 -9.6338 -0.1049 19 6 2.0486 -10.8869 0.3595 20 8 2.7187 -11.0781 1.3523 21 6 1.4110 -12.0508 -0.3548 22 6 1.7636 -13.3503 0.3718 23 6 1.1168 -14.5318 -0.3538 24 1 0.0490 -14.3569 -0.4852 25 6 1.3547 -15.8407 0.4316 26 6 1.5734 -16.9038 -0.6679 27 6 1.4424 -16.1115 -1.9875 28 8 1.7543 -14.7472 -1.6316 29 6 2.4379 -8.4098 0.4931 30 1 -0.4850 0.8400 -0.0004 31 1 0.3533 -2.3906 0.0005 32 1 0.6167 -4.9162 0.9030 33 1 0.6174 -4.9252 -0.8769 34 1 2.8331 -5.9162 -0.7633 35 1 0.1887 -7.3233 -1.7285 36 1 1.9365 -7.4234 -2.1141 37 1 0.0563 -9.5812 -1.1687 38 1 1.5211 -9.7239 -2.1801 39 1 0.3287 -11.9219 -0.3651 40 1 1.7814 -12.0955 -1.3789 41 1 2.8460 -13.4788 0.3817 42 1 1.3937 -13.3057 1.3961 43 1 2.2409 -15.7532 1.0601 44 1 0.4818 -16.0873 1.0361 45 1 2.5678 -17.3421 -0.5831 46 1 0.8093 -17.6787 -0.6074 47 1 2.1530 -16.4834 -2.7256 48 1 0.4246 -16.1795 -2.3716 49 1 3.4506 -8.2404 0.1272 50 1 2.4339 -8.4823 1.5807 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690659868.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:39 Heat of formation + Delta-G solvation = -123.073408 kcal Electronic energy + Delta-G solvation = -28508.169091 eV Core-core repulsion = 24341.755537 eV Total energy + Delta-G solvation = -4166.413555 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.38523 -39.75872 -38.48239 -37.68031 -34.76213 -33.94026 -33.78251 -32.49058 -31.27723 -30.72521 -29.50216 -28.50146 -26.24691 -24.80098 -23.78296 -23.14446 -22.03541 -21.34442 -20.92392 -19.35627 -19.24555 -17.93235 -17.42417 -16.97619 -16.56058 -16.13775 -16.12531 -15.84918 -15.52061 -15.09035 -14.77934 -14.52959 -14.17108 -14.08543 -13.73087 -13.67156 -13.52894 -13.20644 -12.97798 -12.87757 -12.69328 -12.35468 -12.24993 -12.11325 -11.94503 -11.86142 -11.65792 -11.49140 -11.42307 -11.29122 -11.24838 -11.07478 -11.02643 -10.93083 -10.44740 -10.22385 -10.19340 -9.96699 -9.51195 -8.82209 -8.49421 -8.11112 -7.97472 -6.42879 -3.83778 2.49390 2.75357 3.19816 3.25648 3.30196 3.44819 3.88464 4.01160 4.06266 4.19061 4.22702 4.34585 4.45439 4.47543 4.55334 4.63643 4.71858 4.77384 4.87694 4.97689 5.07496 5.09502 5.12485 5.17869 5.21820 5.23866 5.25625 5.29599 5.36131 5.40433 5.50163 5.58285 5.58892 5.66781 5.72324 5.76480 5.88161 5.89991 5.92195 5.94985 6.09217 6.25141 6.42906 7.12130 7.35069 7.54110 7.56583 8.01271 8.04681 8.59636 9.16567 9.52511 10.03866 10.74699 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.045786 B = 0.001436 C = 0.001422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.388323 B =19495.030580 C =19690.469301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.301 4.301 8 H 0.103 0.897 9 N -0.562 5.562 10 C 0.439 3.561 11 O -0.583 6.583 12 C 0.053 3.947 13 N -0.656 5.656 14 C 0.079 3.921 15 H 0.094 0.906 16 C -0.168 4.168 17 C 0.105 3.895 18 N -0.621 5.621 19 C 0.528 3.472 20 O -0.542 6.542 21 C -0.133 4.133 22 C -0.098 4.098 23 C 0.073 3.927 24 H 0.070 0.930 25 C -0.152 4.152 26 C -0.156 4.156 27 C 0.044 3.956 28 O -0.371 6.371 29 C 0.115 3.885 30 H 0.272 0.728 31 H 0.392 0.608 32 H 0.087 0.913 33 H 0.046 0.954 34 H 0.354 0.646 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.075 0.925 47 H 0.090 0.910 48 H 0.058 0.942 49 H 0.074 0.926 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.031 -31.232 -4.463 31.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.178 4.178 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.199 5.199 10 C 0.225 3.775 11 O -0.467 6.467 12 C -0.080 4.080 13 N -0.288 5.288 14 C -0.033 4.033 15 H 0.112 0.888 16 C -0.208 4.208 17 C -0.019 4.019 18 N -0.356 5.356 19 C 0.317 3.683 20 O -0.419 6.419 21 C -0.173 4.173 22 C -0.135 4.135 23 C 0.016 3.984 24 H 0.088 0.912 25 C -0.190 4.190 26 C -0.194 4.194 27 C -0.033 4.033 28 O -0.290 6.290 29 C -0.008 4.008 30 H 0.082 0.918 31 H 0.225 0.775 32 H 0.105 0.895 33 H 0.064 0.936 34 H 0.174 0.826 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.109 0.891 40 H 0.117 0.883 41 H 0.099 0.901 42 H 0.103 0.897 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.093 0.907 46 H 0.094 0.906 47 H 0.109 0.891 48 H 0.077 0.923 49 H 0.092 0.908 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.752 -31.047 -3.338 31.451 hybrid contribution -0.837 0.698 -0.962 1.454 sum -4.588 -30.349 -4.300 30.994 Atomic orbital electron populations 1.69603 1.05938 1.28283 1.50482 1.25256 0.95629 0.99716 0.97235 0.85915 0.78767 0.80422 0.79103 1.19917 1.20974 1.19856 1.19667 0.93376 0.82240 1.47757 0.87946 1.41849 1.09186 1.04582 1.64290 1.19784 0.88394 0.84706 0.84645 1.90534 1.13736 1.87034 1.55396 1.21683 0.94267 0.90732 1.01314 1.59909 1.18342 0.99106 1.51419 1.22750 0.96552 0.89508 0.94499 0.88766 1.23468 1.03593 0.94295 0.99476 1.21973 0.95842 0.95926 0.88127 1.48519 1.51787 1.06297 1.28973 1.20383 0.80804 0.82668 0.84453 1.90719 1.40484 1.84346 1.26329 1.21624 1.01797 0.92650 1.01248 1.21422 1.02552 0.90841 0.98724 1.23081 0.96675 0.94993 0.83691 0.91211 1.22986 1.03155 0.94359 0.98474 1.22934 1.02958 0.98580 0.94933 1.23382 1.00765 0.82191 0.96953 1.89152 1.74504 1.28901 1.36444 1.22144 0.97224 0.81897 0.99489 0.91815 0.77457 0.89471 0.93645 0.82581 0.89742 0.90076 0.91261 0.91245 0.89085 0.88340 0.90126 0.89717 0.90260 0.90427 0.90655 0.90595 0.89128 0.92338 0.90764 0.89816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.29 13.05 55.50 0.72 -23.56 16 2 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 3 Si 0.93 20.96 29.55 -169.99 -5.02 15.93 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 8 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 9 N -0.56 -14.05 5.29 -10.96 -0.06 -14.11 16 10 C 0.44 10.17 7.82 -10.99 -0.09 10.08 16 11 O -0.58 -15.68 15.78 5.55 0.09 -15.59 16 12 C 0.05 0.88 6.04 -4.98 -0.03 0.85 16 13 N -0.66 -10.05 6.00 -105.73 -0.63 -10.69 16 14 C 0.08 0.92 3.32 -65.56 -0.22 0.70 16 15 H 0.09 1.06 7.92 -51.93 -0.41 0.65 16 16 C -0.17 -1.51 6.53 -24.90 -0.16 -1.68 16 17 C 0.10 0.84 6.49 -3.06 -0.02 0.82 16 18 N -0.62 -6.78 3.33 -170.51 -0.57 -7.35 16 19 C 0.53 6.26 7.85 -10.99 -0.09 6.17 16 20 O -0.54 -8.51 16.24 5.55 0.09 -8.42 16 21 C -0.13 -1.10 4.83 -27.88 -0.13 -1.23 16 22 C -0.10 -0.80 4.13 -26.73 -0.11 -0.91 16 23 C 0.07 0.50 3.25 -25.95 -0.08 0.42 16 24 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 25 C -0.15 -0.85 6.63 -25.16 -0.17 -1.02 16 26 C -0.16 -0.75 7.09 -25.17 -0.18 -0.93 16 27 C 0.04 0.25 7.63 37.93 0.29 0.54 16 28 O -0.37 -3.15 11.13 -35.23 -0.39 -3.54 16 29 C 0.12 1.44 6.60 -2.53 -0.02 1.42 16 30 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 31 H 0.39 9.31 7.90 -40.82 -0.32 8.99 16 32 H 0.09 1.36 8.09 -51.93 -0.42 0.93 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.35 5.57 8.01 -39.29 -0.31 5.25 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.75 7.81 -51.93 -0.41 0.35 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.10 0.78 8.01 -51.93 -0.42 0.36 16 41 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 42 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 43 H 0.08 0.48 7.87 -51.93 -0.41 0.07 16 44 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 47 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 49 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 50 H 0.08 1.16 8.04 -51.93 -0.42 0.74 16 LS Contribution 408.07 15.07 6.15 6.15 Total: -1.00 -33.75 408.07 -9.41 -43.15 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -8.54 Total: 10.75 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: -1.24 Total: 7.27 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: -0.53 Total: -55.71 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -0.21 Total: -27.55 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.75 -9.41 -43.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690659868.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.919 kcal (2) G-P(sol) polarization free energy of solvation -33.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds