Wall clock time and date at job start Sat Apr 11 2020 05:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00105 * 2 1 4 4 H 1.48499 * 109.47459 * 239.99306 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47211 * 119.99744 * 3 2 1 7 7 C 1.38950 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00299 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00030 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99773 * 180.27703 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.71934 * 10 9 7 12 12 C 1.50698 * 119.99538 * 179.72591 * 10 9 7 13 13 N 1.46899 * 109.46987 * 179.97438 * 12 10 9 14 14 C 1.46896 * 111.00338 * 179.97438 * 13 12 10 15 15 H 1.08997 * 110.88643 * 322.57095 * 14 13 12 16 16 C 1.55153 * 111.00623 * 86.44849 * 14 13 12 17 17 C 1.54326 * 102.94533 * 153.57854 * 16 14 13 18 18 N 1.47021 * 107.26858 * 337.80993 * 17 16 14 19 19 C 1.34774 * 125.64718 * 178.95956 * 18 17 16 20 20 O 1.21292 * 120.00232 * 179.97438 * 19 18 17 21 21 C 1.50703 * 120.00262 * 359.97438 * 19 18 17 22 22 C 1.53003 * 109.47272 * 179.97438 * 21 19 18 23 23 C 1.52996 * 109.46830 * 180.02562 * 22 21 19 24 24 H 1.08999 * 110.33130 * 307.24680 * 23 22 21 25 25 C 1.54485 * 110.37045 * 184.99849 * 23 22 21 26 26 C 1.54501 * 104.06197 * 217.18682 * 25 23 22 27 27 C 1.54470 * 104.06508 * 0.02562 * 26 25 23 28 28 O 1.44420 * 110.37781 * 69.61867 * 23 22 21 29 29 C 1.47425 * 108.70737 * 358.93854 * 18 17 16 30 30 H 0.96999 * 119.99863 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99681 * 359.97438 * 9 7 2 32 32 H 1.09003 * 109.47112 * 299.99065 * 12 10 9 33 33 H 1.08993 * 109.47916 * 59.99687 * 12 10 9 34 34 H 1.00900 * 111.00047 * 303.95165 * 13 12 10 35 35 H 1.09005 * 110.72307 * 271.94307 * 16 14 13 36 36 H 1.09000 * 110.72282 * 35.03841 * 16 14 13 37 37 H 1.09003 * 109.88309 * 97.22209 * 17 16 14 38 38 H 1.08999 * 109.88725 * 218.39112 * 17 16 14 39 39 H 1.09001 * 109.46746 * 300.00168 * 21 19 18 40 40 H 1.08996 * 109.46774 * 59.99968 * 21 19 18 41 41 H 1.08999 * 109.46943 * 300.00072 * 22 21 19 42 42 H 1.08993 * 109.46923 * 59.99570 * 22 21 19 43 43 H 1.08996 * 110.50882 * 335.83611 * 25 23 22 44 44 H 1.09002 * 110.50650 * 98.40454 * 25 23 22 45 45 H 1.09003 * 110.51162 * 118.65018 * 26 25 23 46 46 H 1.08997 * 110.51318 * 241.21682 * 26 25 23 47 47 H 1.08998 * 110.37388 * 142.81051 * 27 26 25 48 48 H 1.09003 * 110.37570 * 265.14631 * 27 26 25 49 49 H 1.08999 * 110.36850 * 265.29408 * 29 18 17 50 50 H 1.08997 * 110.37069 * 142.96689 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1020 1.6963 -1.2124 5 1 1.2832 2.7465 -0.0006 6 1 3.1019 1.6964 1.2126 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0067 11 8 3.2102 -3.5580 0.0071 12 6 1.2437 -4.8629 0.0129 13 7 2.1982 -5.9795 0.0184 14 6 1.4980 -7.2708 0.0252 15 1 0.6020 -7.2237 0.6441 16 6 1.1536 -7.7243 -1.4181 17 6 1.0910 -9.2611 -1.2919 18 7 1.8743 -9.6338 -0.1049 19 6 2.0486 -10.8869 0.3595 20 8 2.7187 -11.0781 1.3523 21 6 1.4110 -12.0508 -0.3548 22 6 1.7636 -13.3503 0.3718 23 6 1.1168 -14.5318 -0.3538 24 1 0.0490 -14.3569 -0.4852 25 6 1.3547 -15.8407 0.4316 26 6 1.5734 -16.9038 -0.6679 27 6 1.4424 -16.1115 -1.9875 28 8 1.7543 -14.7472 -1.6316 29 6 2.4379 -8.4098 0.4931 30 1 -0.4850 0.8400 -0.0004 31 1 0.3533 -2.3906 0.0005 32 1 0.6167 -4.9162 0.9030 33 1 0.6174 -4.9252 -0.8769 34 1 2.8331 -5.9162 -0.7633 35 1 0.1887 -7.3233 -1.7285 36 1 1.9365 -7.4234 -2.1141 37 1 0.0563 -9.5812 -1.1687 38 1 1.5211 -9.7239 -2.1801 39 1 0.3287 -11.9219 -0.3651 40 1 1.7814 -12.0955 -1.3789 41 1 2.8460 -13.4788 0.3817 42 1 1.3937 -13.3057 1.3961 43 1 2.2409 -15.7532 1.0601 44 1 0.4818 -16.0873 1.0361 45 1 2.5678 -17.3421 -0.5831 46 1 0.8093 -17.6787 -0.6074 47 1 2.1530 -16.4834 -2.7256 48 1 0.4246 -16.1795 -2.3716 49 1 3.4506 -8.2404 0.1272 50 1 2.4339 -8.4823 1.5807 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690659868.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:38 Heat of formation + Delta-G solvation = -148.173007 kcal Electronic energy + Delta-G solvation = -28509.257491 eV Core-core repulsion = 24341.755537 eV Total energy + Delta-G solvation = -4167.501955 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.24774 -40.35076 -40.09232 -38.83992 -36.19512 -35.55138 -34.58584 -33.26296 -32.94733 -31.72213 -30.26783 -29.31694 -27.73063 -25.94145 -25.03784 -23.87655 -22.53639 -21.91634 -21.79596 -21.09989 -20.12732 -19.91237 -18.31360 -17.79770 -17.57351 -17.20086 -16.95158 -16.65943 -16.44500 -16.32096 -16.12593 -15.90254 -15.51141 -15.22834 -14.64719 -14.59718 -14.40682 -14.11527 -14.05946 -13.83358 -13.66178 -13.62405 -13.46441 -13.10967 -12.94036 -12.77820 -12.64254 -12.56939 -12.43171 -12.37692 -12.32420 -12.11671 -11.89458 -11.85096 -11.72233 -11.49493 -11.46893 -10.92584 -10.68017 -10.35459 -10.00585 -9.71029 -9.31241 -8.45868 -5.94435 1.40440 1.42715 1.53171 1.59231 1.88658 2.06553 2.30423 2.91644 2.98344 3.21638 3.35193 3.48212 3.65986 3.74691 3.75456 3.89243 4.00724 4.06257 4.10600 4.15240 4.25797 4.30136 4.38216 4.40742 4.46727 4.51442 4.54343 4.60887 4.67188 4.74484 4.75027 4.81989 4.85825 4.87097 5.00122 5.01812 5.07183 5.08419 5.11677 5.17957 5.23129 5.29837 5.41797 5.88504 5.96825 6.09286 6.35557 6.49618 6.61280 7.11184 7.13680 7.57434 8.13102 8.71096 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.045786 B = 0.001436 C = 0.001422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.388323 B =19495.030580 C =19690.469301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.010 4.010 3 Si 0.991 3.009 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.274 1.274 7 C -0.337 4.337 8 H 0.078 0.922 9 N -0.571 5.571 10 C 0.436 3.564 11 O -0.626 6.626 12 C 0.070 3.930 13 N -0.675 5.675 14 C 0.084 3.916 15 H 0.104 0.896 16 C -0.160 4.160 17 C 0.104 3.896 18 N -0.620 5.620 19 C 0.520 3.480 20 O -0.591 6.591 21 C -0.122 4.122 22 C -0.095 4.095 23 C 0.075 3.925 24 H 0.088 0.912 25 C -0.155 4.155 26 C -0.154 4.154 27 C 0.038 3.962 28 O -0.397 6.397 29 C 0.115 3.885 30 H 0.278 0.722 31 H 0.397 0.603 32 H 0.105 0.895 33 H 0.077 0.923 34 H 0.349 0.651 35 H 0.105 0.895 36 H 0.077 0.923 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.121 0.879 40 H 0.106 0.894 41 H 0.054 0.946 42 H 0.081 0.919 43 H 0.067 0.933 44 H 0.092 0.908 45 H 0.071 0.929 46 H 0.093 0.907 47 H 0.095 0.905 48 H 0.072 0.928 49 H 0.059 0.941 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.384 -32.278 -5.752 33.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.210 4.210 3 Si 0.815 3.185 4 H -0.197 1.197 5 H -0.194 1.194 6 H -0.199 1.199 7 C -0.466 4.466 8 H 0.096 0.904 9 N -0.209 5.209 10 C 0.223 3.777 11 O -0.512 6.512 12 C -0.062 4.062 13 N -0.307 5.307 14 C -0.027 4.027 15 H 0.122 0.878 16 C -0.199 4.199 17 C -0.018 4.018 18 N -0.353 5.353 19 C 0.311 3.689 20 O -0.472 6.472 21 C -0.161 4.161 22 C -0.133 4.133 23 C 0.018 3.982 24 H 0.106 0.894 25 C -0.192 4.192 26 C -0.192 4.192 27 C -0.039 4.039 28 O -0.317 6.317 29 C -0.009 4.009 30 H 0.087 0.913 31 H 0.231 0.769 32 H 0.123 0.877 33 H 0.095 0.905 34 H 0.169 0.831 35 H 0.123 0.877 36 H 0.096 0.904 37 H 0.115 0.885 38 H 0.104 0.896 39 H 0.139 0.861 40 H 0.124 0.876 41 H 0.073 0.927 42 H 0.099 0.901 43 H 0.086 0.914 44 H 0.111 0.889 45 H 0.090 0.910 46 H 0.111 0.889 47 H 0.113 0.887 48 H 0.090 0.910 49 H 0.077 0.923 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.154 -32.109 -4.655 33.024 hybrid contribution -0.062 0.970 -0.550 1.117 sum -6.216 -31.139 -5.205 32.177 Atomic orbital electron populations 1.69657 1.06735 1.29346 1.50175 1.25990 0.96522 1.02263 0.96217 0.85022 0.77804 0.76825 0.78889 1.19685 1.19415 1.19944 1.19631 0.92707 0.84144 1.50136 0.90446 1.41906 1.09350 1.04631 1.64984 1.20932 0.88257 0.86278 0.82218 1.90503 1.16021 1.87994 1.56711 1.21520 0.93772 0.87409 1.03524 1.59834 1.18866 1.00259 1.51741 1.22694 0.96016 0.87201 0.96759 0.87756 1.23417 1.04503 0.94934 0.97080 1.22205 0.97022 0.95255 0.87341 1.48610 1.51586 1.05545 1.29599 1.21118 0.80184 0.83586 0.83996 1.90695 1.42730 1.85089 1.28677 1.21627 1.03119 0.90615 1.00738 1.21367 1.01062 0.91885 0.99009 1.23115 0.97172 0.94663 0.83267 0.89393 1.23018 1.03354 0.94193 0.98679 1.22941 1.03445 0.98630 0.94144 1.23561 1.01705 0.81124 0.97473 1.89117 1.75124 1.30419 1.37024 1.21980 0.97098 0.83445 0.98334 0.91283 0.76855 0.87745 0.90518 0.83130 0.87672 0.90421 0.88467 0.89580 0.86141 0.87555 0.92735 0.90070 0.91426 0.88903 0.90970 0.88860 0.88674 0.90982 0.92315 0.91996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.87 13.05 21.66 0.28 -48.59 16 2 C -0.01 -0.52 5.50 84.93 0.47 -0.06 16 3 Si 0.99 42.72 29.55 68.60 2.03 44.74 16 4 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 5 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.34 -19.02 9.68 84.04 0.81 -18.20 16 8 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 9 N -0.57 -28.79 5.29 -306.98 -1.62 -30.41 16 10 C 0.44 20.27 7.82 87.66 0.69 20.96 16 11 O -0.63 -34.53 15.78 -3.07 -0.05 -34.58 16 12 C 0.07 2.22 6.04 85.56 0.52 2.74 16 13 N -0.68 -20.19 6.00 -488.42 -2.93 -23.12 16 14 C 0.08 1.82 3.32 46.31 0.15 1.98 16 15 H 0.10 2.08 7.92 -2.39 -0.02 2.06 16 16 C -0.16 -2.39 6.53 31.78 0.21 -2.18 16 17 C 0.10 1.32 6.49 86.73 0.56 1.89 16 18 N -0.62 -12.81 3.33 -811.77 -2.70 -15.51 16 19 C 0.52 12.12 7.85 87.66 0.69 12.80 16 20 O -0.59 -19.31 16.24 -3.07 -0.05 -19.36 16 21 C -0.12 -1.78 4.83 29.85 0.14 -1.64 16 22 C -0.10 -1.53 4.13 30.59 0.13 -1.40 16 23 C 0.08 0.91 3.25 31.10 0.10 1.01 16 24 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 25 C -0.15 -1.54 6.63 31.61 0.21 -1.33 16 26 C -0.15 -1.23 7.09 31.60 0.22 -1.01 16 27 C 0.04 0.37 7.63 72.48 0.55 0.92 16 28 O -0.40 -6.21 11.13 -148.98 -1.66 -7.87 16 29 C 0.12 2.88 6.60 86.86 0.57 3.46 16 30 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 31 H 0.40 18.81 7.90 -92.71 -0.73 18.08 16 32 H 0.10 3.01 8.09 -2.39 -0.02 2.99 16 33 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.35 10.94 8.01 -89.69 -0.72 10.22 16 35 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 36 H 0.08 1.26 7.81 -2.39 -0.02 1.24 16 37 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.11 1.44 8.01 -2.39 -0.02 1.43 16 41 H 0.05 1.14 8.10 -2.39 -0.02 1.12 16 42 H 0.08 1.33 8.10 -2.39 -0.02 1.31 16 43 H 0.07 0.82 7.87 -2.39 -0.02 0.80 16 44 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 46 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 47 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 49 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 50 H 0.06 1.80 8.04 -2.39 -0.02 1.78 16 Total: -1.00 -75.87 408.07 -1.18 -77.05 By element: Atomic # 1 Polarization: 38.21 SS G_CDS: -0.51 Total: 37.70 kcal Atomic # 6 Polarization: 13.90 SS G_CDS: 6.03 Total: 19.93 kcal Atomic # 7 Polarization: -110.65 SS G_CDS: -6.97 Total: -117.62 kcal Atomic # 8 Polarization: -60.05 SS G_CDS: -1.76 Total: -61.81 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.74 kcal Total: -75.87 -1.18 -77.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690659868.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.119 kcal (2) G-P(sol) polarization free energy of solvation -75.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds