Wall clock time and date at job start Sat Apr 11 2020 05:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99938 * 2 1 4 4 H 1.48496 * 109.47191 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46534 * 299.99499 * 3 2 1 6 6 H 1.48498 * 109.47283 * 59.99442 * 3 2 1 7 7 C 1.38942 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00163 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00412 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00327 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99756 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99928 * 180.27606 * 10 9 7 13 13 N 1.46902 * 109.47027 * 179.72353 * 12 10 9 14 14 C 1.47848 * 110.99608 * 290.84046 * 13 12 10 15 15 C 1.54906 * 104.79253 * 213.63549 * 14 13 12 16 16 C 1.55144 * 101.65201 * 37.07548 * 15 14 13 17 17 H 1.08996 * 110.85803 * 82.79929 * 16 15 14 18 18 C 1.53005 * 110.70179 * 205.96451 * 16 15 14 19 19 N 1.46499 * 109.46876 * 288.59576 * 18 16 15 20 20 C 1.34781 * 120.00054 * 180.02562 * 19 18 16 21 21 O 1.21283 * 119.99761 * 359.97438 * 20 19 18 22 22 C 1.50700 * 120.00208 * 180.02562 * 20 19 18 23 23 H 1.08996 * 109.48090 * 54.99113 * 22 20 19 24 24 C 1.53093 * 109.47800 * 294.97063 * 22 20 19 25 25 C 1.53174 * 109.16581 * 182.42199 * 24 22 20 26 26 C 1.53173 * 109.04394 * 56.95859 * 25 24 22 27 27 C 1.53093 * 109.16949 * 303.02967 * 26 25 24 28 28 O 1.42898 * 109.48227 * 175.02069 * 22 20 19 29 29 C 1.47437 * 110.99793 * 169.99772 * 13 12 10 30 30 H 0.96996 * 120.00330 * 0.02562 * 1 2 3 31 31 H 0.97000 * 119.99355 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.46965 * 299.72211 * 12 10 9 33 33 H 1.09000 * 109.47154 * 59.71645 * 12 10 9 34 34 H 1.08996 * 110.37514 * 332.46473 * 14 13 12 35 35 H 1.08997 * 110.37181 * 94.80805 * 14 13 12 36 36 H 1.08999 * 110.99540 * 278.97827 * 15 14 13 37 37 H 1.09001 * 111.02263 * 155.17360 * 15 14 13 38 38 H 1.08999 * 109.47505 * 48.59346 * 18 16 15 39 39 H 1.09006 * 109.46889 * 168.59630 * 18 16 15 40 40 H 0.96999 * 120.00360 * 0.02562 * 19 18 16 41 41 H 1.09003 * 109.52002 * 302.32049 * 24 22 20 42 42 H 1.09003 * 109.52191 * 62.49923 * 24 22 20 43 43 H 1.09003 * 109.52998 * 297.09897 * 25 24 22 44 44 H 1.08999 * 109.61786 * 176.87960 * 25 24 22 45 45 H 1.09001 * 109.52312 * 183.11738 * 26 25 24 46 46 H 1.09004 * 109.56994 * 62.97033 * 26 25 24 47 47 H 1.09002 * 109.47642 * 297.63020 * 27 26 25 48 48 H 1.08994 * 109.49138 * 177.59478 * 27 26 25 49 49 H 1.09004 * 109.89060 * 242.65914 * 29 13 12 50 50 H 1.09001 * 109.89404 * 3.85229 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8894 2.3963 -1.2126 6 1 1.8893 2.3965 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2103 -3.5578 0.0021 12 6 1.2438 -4.8630 -0.0047 13 7 2.1985 -5.9795 -0.0089 14 6 2.9170 -6.0574 -1.2987 15 6 3.1555 -7.5707 -1.5278 16 6 1.8437 -8.1827 -0.9697 17 1 1.0504 -8.1470 -1.7164 18 6 2.0752 -9.6196 -0.4976 19 7 2.2701 -10.4900 -1.6597 20 6 2.4916 -11.8079 -1.4849 21 8 2.5301 -12.2731 -0.3655 22 6 2.6927 -12.7033 -2.6803 23 1 3.5034 -12.3123 -3.2951 24 6 1.4038 -12.7508 -3.5051 25 6 1.5962 -13.7094 -4.6841 26 6 1.9946 -15.0878 -4.1477 27 6 3.2608 -14.9499 -3.2982 28 8 3.0228 -14.0215 -2.2383 29 6 1.5114 -7.2630 0.2241 30 1 -0.4850 0.8400 -0.0004 31 1 0.3534 -2.3906 0.0005 32 1 0.6165 -4.9246 0.8846 33 1 0.6178 -4.9168 -0.8953 34 1 2.3043 -5.6442 -2.0999 35 1 3.8680 -5.5285 -1.2358 36 1 4.0203 -7.9196 -0.9633 37 1 3.2692 -7.7924 -2.5889 38 1 2.9614 -9.6555 0.1360 39 1 1.2088 -9.9595 0.0699 40 1 2.2396 -10.1179 -2.5550 41 1 0.5837 -13.1031 -2.8793 42 1 1.1743 -11.7533 -3.8800 43 1 2.3829 -13.3310 -5.3368 44 1 0.6651 -13.7915 -5.2448 45 1 2.1875 -15.7617 -4.9824 46 1 1.1869 -15.4886 -3.5352 47 1 4.0788 -14.5883 -3.9213 48 1 3.5248 -15.9206 -2.8788 49 1 1.8699 -7.7129 1.1499 50 1 0.4347 -7.1025 0.2799 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691135956.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:59 Heat of formation + Delta-G solvation = -121.317432 kcal Electronic energy + Delta-G solvation = -29065.797803 eV Core-core repulsion = 24899.460393 eV Total energy + Delta-G solvation = -4166.337410 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.66543 -39.47646 -38.68762 -37.62046 -35.22378 -34.15306 -33.86297 -32.49857 -31.53911 -31.11176 -29.43627 -27.39462 -26.25970 -24.77002 -24.35797 -23.83185 -21.36236 -20.97006 -20.77983 -20.26773 -19.19759 -17.87649 -17.85172 -17.15966 -16.31887 -16.19655 -15.79201 -15.74604 -15.25307 -14.97013 -14.96031 -14.66085 -14.43358 -14.22111 -14.06156 -13.81168 -13.63695 -13.24836 -13.17201 -13.04111 -12.71864 -12.42439 -12.08700 -12.01435 -11.78382 -11.73319 -11.59746 -11.48324 -11.26928 -11.17194 -10.99371 -10.98550 -10.88940 -10.65439 -10.33655 -10.21498 -10.07594 -9.87646 -9.49455 -9.35309 -8.43605 -7.96037 -7.86634 -6.40670 -3.81316 2.30933 2.47670 3.16801 3.27237 3.34526 3.57583 3.92709 4.03177 4.12328 4.22462 4.25905 4.26516 4.40763 4.45217 4.46139 4.55920 4.62587 4.76663 4.88568 5.01647 5.11402 5.13931 5.16062 5.22831 5.24472 5.32765 5.35978 5.41146 5.45617 5.48151 5.49195 5.61802 5.70846 5.72988 5.77659 5.81680 5.91314 6.02238 6.07137 6.23950 6.30394 6.45806 6.61915 7.16104 7.25642 7.27977 7.56404 7.92057 8.08002 8.63558 9.19826 9.56287 10.08422 10.77298 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.034698 B = 0.001581 C = 0.001566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.770056 B =17709.468996 C =17872.927341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.021 3.979 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.297 4.297 8 H 0.103 0.897 9 N -0.567 5.567 10 C 0.445 3.555 11 O -0.577 6.577 12 C 0.040 3.960 13 N -0.505 5.505 14 C 0.053 3.947 15 C -0.125 4.125 16 C -0.124 4.124 17 H 0.081 0.919 18 C 0.133 3.867 19 N -0.725 5.725 20 C 0.518 3.482 21 O -0.517 6.517 22 C 0.075 3.925 23 H 0.084 0.916 24 C -0.146 4.146 25 C -0.121 4.121 26 C -0.159 4.159 27 C 0.059 3.941 28 O -0.354 6.354 29 C 0.050 3.950 30 H 0.270 0.730 31 H 0.391 0.609 32 H 0.088 0.912 33 H 0.048 0.952 34 H 0.041 0.959 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.400 0.600 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.067 0.933 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.074 0.926 47 H 0.052 0.948 48 H 0.099 0.901 49 H 0.081 0.919 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.224 -27.393 -11.319 29.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.427 4.427 8 H 0.121 0.879 9 N -0.204 5.204 10 C 0.230 3.770 11 O -0.460 6.460 12 C -0.091 4.091 13 N -0.229 5.229 14 C -0.074 4.074 15 C -0.164 4.164 16 C -0.143 4.143 17 H 0.100 0.900 18 C 0.010 3.990 19 N -0.379 5.379 20 C 0.303 3.697 21 O -0.392 6.392 22 C 0.013 3.987 23 H 0.101 0.899 24 C -0.184 4.184 25 C -0.159 4.159 26 C -0.197 4.197 27 C -0.018 4.018 28 O -0.272 6.272 29 C -0.078 4.078 30 H 0.080 0.920 31 H 0.224 0.776 32 H 0.106 0.894 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.112 0.888 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.234 0.766 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.086 0.914 44 H 0.092 0.908 45 H 0.094 0.906 46 H 0.092 0.908 47 H 0.071 0.929 48 H 0.117 0.883 49 H 0.099 0.901 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.866 -27.516 -9.866 29.244 hybrid contribution -1.018 1.049 -1.426 2.042 sum -0.153 -26.467 -11.292 28.776 Atomic orbital electron populations 1.69619 1.05925 1.27984 1.50936 1.25249 0.95626 0.99680 0.97451 0.85808 0.79712 0.81198 0.77670 1.19238 1.20827 1.20767 1.19747 0.93378 0.82226 1.47327 0.87893 1.41872 1.09146 1.04598 1.64782 1.19749 0.88429 0.84519 0.84308 1.90508 1.13676 1.87004 1.54849 1.22122 0.93943 0.91650 1.01401 1.63257 1.25498 1.01026 1.33077 1.23026 1.00503 0.94726 0.89187 1.22865 0.96970 0.95927 1.00595 1.22671 0.98914 0.93677 0.99070 0.90021 1.21385 1.02315 0.87762 0.87571 1.45897 1.74006 1.07441 1.10574 1.20134 0.76943 0.82354 0.90298 1.90745 1.48551 1.74579 1.25288 1.21881 0.97912 0.85269 0.93594 0.89863 1.22151 0.97515 1.01201 0.97543 1.21587 1.02415 0.94846 0.97044 1.22227 0.99328 0.97754 1.00409 1.22677 0.96024 0.93521 0.89560 1.88074 1.89892 1.17848 1.31395 1.22829 0.97809 0.89515 0.97676 0.91982 0.77558 0.89397 0.93416 0.94061 0.88763 0.90362 0.91201 0.90701 0.91167 0.76584 0.90278 0.90172 0.91422 0.90835 0.90561 0.90773 0.92922 0.88263 0.90101 0.92450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.54 13.05 55.50 0.72 -23.82 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 3 Si 0.93 21.04 29.55 -169.99 -5.02 16.02 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 8 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 9 N -0.57 -14.34 5.29 -10.96 -0.06 -14.40 16 10 C 0.44 10.47 7.58 -10.98 -0.08 10.38 16 11 O -0.58 -15.55 14.61 5.55 0.08 -15.47 16 12 C 0.04 0.71 5.05 -4.97 -0.03 0.69 16 13 N -0.50 -8.17 4.86 -232.69 -1.13 -9.30 16 14 C 0.05 0.80 5.74 -2.30 -0.01 0.78 16 15 C -0.13 -1.32 6.44 -24.59 -0.16 -1.48 16 16 C -0.12 -1.16 2.96 -88.79 -0.26 -1.42 16 17 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 18 C 0.13 1.24 4.97 -4.04 -0.02 1.22 16 19 N -0.73 -5.84 5.43 -60.29 -0.33 -6.16 16 20 C 0.52 5.51 7.18 -10.98 -0.08 5.43 16 21 O -0.52 -8.00 16.51 -14.30 -0.24 -8.24 16 22 C 0.07 0.59 3.05 -27.84 -0.09 0.51 16 23 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 24 C -0.15 -0.83 5.37 -26.59 -0.14 -0.97 16 25 C -0.12 -0.53 6.03 -26.55 -0.16 -0.69 16 26 C -0.16 -0.76 6.14 -26.59 -0.16 -0.93 16 27 C 0.06 0.36 6.84 37.21 0.25 0.62 16 28 O -0.35 -3.59 9.94 -55.09 -0.55 -4.14 16 29 C 0.05 0.60 6.46 -2.84 -0.02 0.58 16 30 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 31 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 32 H 0.09 1.41 8.03 -51.93 -0.42 1.00 16 33 H 0.05 0.76 7.85 -51.93 -0.41 0.35 16 34 H 0.04 0.62 7.62 -51.93 -0.40 0.23 16 35 H 0.09 1.70 7.37 -51.93 -0.38 1.31 16 36 H 0.08 0.87 7.94 -51.93 -0.41 0.46 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.81 8.00 -51.93 -0.42 0.39 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.40 2.12 8.32 -40.82 -0.34 1.78 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.08 0.31 7.99 -51.93 -0.41 -0.10 16 43 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 44 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 46 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 48 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 49 H 0.08 0.96 7.82 -51.93 -0.41 0.55 16 50 H 0.06 0.62 7.55 -51.93 -0.39 0.23 16 LS Contribution 400.99 15.07 6.04 6.04 Total: -1.00 -35.14 400.99 -10.14 -45.29 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -8.47 Total: 7.42 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: -1.20 Total: 6.77 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: -0.79 Total: -53.69 kcal Atomic # 8 Polarization: -27.15 SS G_CDS: -0.70 Total: -27.85 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.14 -10.14 -45.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691135956.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.032 kcal (2) G-P(sol) polarization free energy of solvation -35.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds