Wall clock time and date at job start Sat Apr 11 2020 05:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 120.00456 * 2 1 4 4 H 1.48496 * 109.47218 * 239.99839 * 3 2 1 5 5 H 1.48504 * 109.46785 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46751 * 120.00076 * 3 2 1 7 7 C 1.38816 * 119.99418 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99572 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00461 * 359.97438 * 7 2 1 10 10 C 1.47471 * 125.62644 * 0.03195 * 9 7 2 11 11 C 1.54906 * 104.81210 * 204.04433 * 10 9 7 12 12 C 1.55156 * 101.61451 * 323.04512 * 11 10 9 13 13 H 1.09005 * 110.72052 * 277.11432 * 12 11 10 14 14 C 1.53005 * 110.71903 * 153.84569 * 12 11 10 15 15 N 1.46500 * 109.47109 * 174.99655 * 14 12 11 16 16 C 1.34776 * 120.00180 * 179.97438 * 15 14 12 17 17 O 1.21284 * 119.99388 * 0.02562 * 16 15 14 18 18 C 1.50697 * 120.00282 * 180.02562 * 16 15 14 19 19 C 1.52997 * 109.47010 * 180.02562 * 18 16 15 20 20 C 1.50697 * 109.47010 * 180.02562 * 19 18 16 21 21 O 1.21283 * 120.00212 * 359.97438 * 20 19 18 22 22 N 1.34774 * 120.00184 * 180.02562 * 20 19 18 23 23 C 1.47155 * 120.98310 * 359.71098 * 22 20 19 24 24 C 1.53712 * 108.16008 * 129.43601 * 23 22 20 25 25 O 1.42956 * 109.14924 * 52.54150 * 24 23 22 26 26 C 1.42959 * 114.16919 * 297.28766 * 25 24 23 27 27 C 1.47161 * 120.98446 * 180.02562 * 22 20 19 28 28 C 1.47017 * 125.65385 * 180.02562 * 9 7 2 29 29 H 0.97005 * 119.99622 * 0.02562 * 1 2 3 30 30 H 1.09008 * 110.34870 * 85.22563 * 10 9 7 31 31 H 1.09001 * 110.40581 * 322.89599 * 10 9 7 32 32 H 1.09002 * 111.00655 * 204.94912 * 11 10 9 33 33 H 1.09002 * 111.00329 * 81.13838 * 11 10 9 34 34 H 1.08995 * 109.47101 * 294.99732 * 14 12 11 35 35 H 1.08998 * 109.46846 * 54.99796 * 14 12 11 36 36 H 0.96999 * 120.00061 * 0.02562 * 15 14 12 37 37 H 1.09002 * 109.46719 * 299.99812 * 18 16 15 38 38 H 1.09000 * 109.46775 * 60.00105 * 18 16 15 39 39 H 1.08995 * 109.47278 * 299.99882 * 19 18 16 40 40 H 1.09000 * 109.47283 * 60.00395 * 19 18 16 41 41 H 1.08997 * 109.68521 * 249.21804 * 23 22 20 42 42 H 1.09006 * 109.67841 * 9.76736 * 23 22 20 43 43 H 1.09003 * 109.65771 * 292.57117 * 24 23 22 44 44 H 1.09003 * 109.43885 * 172.37822 * 24 23 22 45 45 H 1.08999 * 109.51375 * 302.65945 * 26 25 24 46 46 H 1.08999 * 109.51918 * 182.50270 * 26 25 24 47 47 H 1.09002 * 109.67663 * 350.23065 * 27 22 20 48 48 H 1.09001 * 109.67955 * 110.74548 * 27 22 20 49 49 H 1.08998 * 109.88206 * 59.58041 * 28 9 7 50 50 H 1.09004 * 110.01118 * 298.49134 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6962 1.2126 7 6 2.0101 -1.2023 -0.0005 8 1 3.0901 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1422 -2.5327 -0.0007 11 6 -0.4023 -3.9325 0.6096 12 6 0.7781 -4.7524 0.0249 13 1 0.5461 -5.0976 -0.9827 14 6 1.1222 -5.9318 0.9369 15 7 2.1561 -6.7537 0.3031 16 6 2.6193 -7.8542 0.9283 17 8 2.1797 -8.1643 2.0153 18 6 3.6833 -8.6994 0.2766 19 6 4.0273 -9.8787 1.1886 20 6 5.0917 -10.7236 0.5373 21 8 5.5315 -10.4132 -0.5496 22 7 5.5542 -11.8246 1.1620 23 6 5.0397 -12.2183 2.4832 24 6 4.6364 -13.7002 2.4181 25 8 5.7342 -14.4631 1.9119 26 6 6.1181 -14.1222 0.5776 27 6 6.5936 -12.6648 0.5461 28 6 1.9315 -3.7276 -0.0005 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5277 -2.4852 -1.0192 31 1 -0.6003 -1.7591 0.6155 32 1 -1.3595 -4.3328 0.2753 33 1 -0.3537 -3.8994 1.6980 34 1 1.4905 -5.5572 1.8919 35 1 0.2297 -6.5350 1.1030 36 1 2.5079 -6.5055 -0.5661 37 1 3.3151 -9.0743 -0.6784 38 1 4.5755 -8.0958 0.1105 39 1 4.3952 -9.5042 2.1438 40 1 3.1348 -10.4823 1.3543 41 1 5.8156 -12.0788 3.2359 42 1 4.1703 -11.6107 2.7345 43 1 3.7765 -13.8176 1.7586 44 1 4.3798 -14.0506 3.4179 45 1 5.2637 -14.2411 -0.0887 46 1 6.9275 -14.7762 0.2532 47 1 6.7537 -12.3529 -0.4860 48 1 7.5233 -12.5688 1.1070 49 1 2.5571 -3.8514 0.8834 50 1 2.5304 -3.8660 -0.9007 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691168159.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:03 Heat of formation + Delta-G solvation = -93.253879 kcal Electronic energy + Delta-G solvation = -29019.421492 eV Core-core repulsion = 24854.301009 eV Total energy + Delta-G solvation = -4165.120483 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.84646 -39.74769 -38.71645 -37.65908 -35.24437 -34.69462 -33.34527 -32.50320 -31.81498 -29.87530 -28.71498 -28.19165 -26.26031 -25.19932 -24.42224 -23.32107 -22.30763 -20.69118 -19.96482 -19.65198 -19.42161 -18.09532 -17.03956 -16.90338 -16.58841 -16.54409 -16.20891 -15.94236 -15.62412 -15.55239 -15.33307 -14.81873 -14.61560 -14.21505 -14.04667 -13.66532 -13.35789 -13.23180 -13.03762 -12.64713 -12.51718 -12.50941 -12.09455 -11.97186 -11.76890 -11.71643 -11.52940 -11.46103 -11.28982 -10.96583 -10.79429 -10.74244 -10.43835 -10.19529 -10.16008 -10.04048 -9.93470 -9.74561 -9.50758 -9.09276 -8.98306 -8.65368 -6.84167 -5.65980 -3.07643 2.19770 2.33004 2.61735 3.20924 3.25615 3.40210 3.44303 3.45682 4.04704 4.14813 4.36958 4.47817 4.48261 4.54823 4.60480 4.67873 4.76725 4.83488 4.94661 5.04213 5.12145 5.16229 5.22184 5.24035 5.31140 5.36088 5.39809 5.50954 5.52356 5.61006 5.69573 5.87597 5.88003 6.05718 6.09875 6.33669 6.42903 6.50748 6.55167 6.57337 6.71505 6.81889 6.89926 7.50126 7.51714 7.61783 7.69617 7.84806 8.20240 8.35703 9.21521 9.82512 10.47319 11.37923 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026341 B = 0.001644 C = 0.001590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.718869 B =17027.006029 C =17602.779948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.012 4.012 3 Si 0.915 3.085 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.224 4.224 8 H 0.076 0.924 9 N -0.604 5.604 10 C 0.152 3.848 11 C -0.135 4.135 12 C -0.115 4.115 13 H 0.076 0.924 14 C 0.132 3.868 15 N -0.724 5.724 16 C 0.512 3.488 17 O -0.550 6.550 18 C -0.127 4.127 19 C -0.122 4.122 20 C 0.519 3.481 21 O -0.537 6.537 22 N -0.620 5.620 23 C 0.069 3.931 24 C 0.046 3.954 25 O -0.380 6.380 26 C 0.048 3.952 27 C 0.076 3.924 28 C 0.142 3.858 29 H 0.252 0.748 30 H 0.012 0.988 31 H 0.107 0.893 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.403 0.597 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.081 0.919 42 H 0.102 0.898 43 H 0.058 0.942 44 H 0.109 0.891 45 H 0.057 0.943 46 H 0.107 0.893 47 H 0.102 0.898 48 H 0.076 0.924 49 H 0.023 0.977 50 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.198 -28.865 2.799 30.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.207 4.207 3 Si 0.746 3.254 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.212 1.212 7 C -0.352 4.352 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.027 3.973 11 C -0.175 4.175 12 C -0.134 4.134 13 H 0.094 0.906 14 C 0.009 3.991 15 N -0.374 5.374 16 C 0.298 3.702 17 O -0.429 6.429 18 C -0.167 4.167 19 C -0.163 4.163 20 C 0.308 3.692 21 O -0.414 6.414 22 N -0.356 5.356 23 C -0.054 4.054 24 C -0.031 4.031 25 O -0.298 6.298 26 C -0.029 4.029 27 C -0.047 4.047 28 C 0.015 3.985 29 H 0.063 0.937 30 H 0.030 0.970 31 H 0.125 0.875 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.237 0.763 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.099 0.901 42 H 0.120 0.880 43 H 0.076 0.924 44 H 0.127 0.873 45 H 0.075 0.925 46 H 0.125 0.875 47 H 0.121 0.879 48 H 0.094 0.906 49 H 0.041 0.959 50 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 8.154 -28.795 3.094 30.087 hybrid contribution 0.556 1.173 -0.615 1.436 sum 8.710 -27.623 2.479 29.069 Atomic orbital electron populations 1.69787 1.04881 1.24884 1.57554 1.24793 0.95747 0.97737 1.02428 0.86144 0.78399 0.83014 0.77886 1.21233 1.21540 1.21166 1.19034 0.90470 0.82517 1.43185 0.90597 1.44504 1.01979 0.99716 1.86852 1.21945 0.84666 0.92483 0.98202 1.23007 0.95520 0.98631 1.00306 1.22448 0.98308 0.94034 0.98624 0.90559 1.21467 0.90097 0.91045 0.96517 1.46103 1.41601 1.26450 1.23281 1.20558 0.82893 0.81180 0.85589 1.90688 1.59910 1.71273 1.21021 1.21382 0.99105 0.96274 0.99951 1.21389 0.98144 0.96361 1.00368 1.20828 0.82814 0.80320 0.85258 1.90714 1.59577 1.70194 1.20914 1.48158 1.40806 1.26501 1.20105 1.22618 1.01155 0.96992 0.84627 1.23083 0.89158 0.90065 1.00813 1.87979 1.51319 1.60561 1.29966 1.23010 1.00673 0.95020 0.84245 1.22309 0.90839 0.90409 1.01150 1.21328 0.93442 0.85967 0.97723 0.93680 0.97010 0.87531 0.92146 0.91852 0.91221 0.91667 0.76271 0.88138 0.87971 0.87866 0.88007 0.90077 0.88022 0.92355 0.87336 0.92515 0.87498 0.87931 0.90579 0.95864 0.96400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.85 10.09 55.49 0.56 -26.29 16 2 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 3 Si 0.92 22.11 29.55 -169.99 -5.02 17.09 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 6 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 7 C -0.22 -6.25 10.27 -15.06 -0.15 -6.41 16 8 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 9 N -0.60 -15.41 3.40 -170.04 -0.58 -15.99 16 10 C 0.15 3.64 5.89 -2.50 -0.01 3.63 16 11 C -0.14 -2.48 6.53 -24.58 -0.16 -2.64 16 12 C -0.11 -1.88 2.97 -88.79 -0.26 -2.14 16 13 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 14 C 0.13 1.89 5.02 -4.04 -0.02 1.87 16 15 N -0.72 -8.85 5.47 -60.29 -0.33 -9.18 16 16 C 0.51 6.29 7.83 -10.99 -0.09 6.20 16 17 O -0.55 -8.46 15.98 5.55 0.09 -8.37 16 18 C -0.13 -1.20 4.99 -27.89 -0.14 -1.34 16 19 C -0.12 -1.03 3.36 -27.89 -0.09 -1.13 16 20 C 0.52 4.95 7.71 -10.99 -0.08 4.87 16 21 O -0.54 -6.86 15.45 5.56 0.09 -6.78 16 22 N -0.62 -4.70 3.01 -171.98 -0.52 -5.22 16 23 C 0.07 0.36 6.57 -3.31 -0.02 0.34 16 24 C 0.05 0.23 7.00 37.53 0.26 0.49 16 25 O -0.38 -2.66 10.74 -35.23 -0.38 -3.04 16 26 C 0.05 0.27 6.99 37.33 0.26 0.53 16 27 C 0.08 0.51 6.64 -3.51 -0.02 0.49 16 28 C 0.14 2.86 6.75 -3.07 -0.02 2.84 16 29 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 30 H 0.01 0.30 8.14 -51.92 -0.42 -0.12 16 31 H 0.11 2.89 5.88 -51.93 -0.31 2.58 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 1.16 8.05 -51.93 -0.42 0.74 16 34 H 0.07 1.11 7.93 -51.93 -0.41 0.70 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.40 4.21 8.47 -40.82 -0.35 3.87 16 37 H 0.10 0.87 8.10 -51.93 -0.42 0.45 16 38 H 0.10 0.95 8.10 -51.93 -0.42 0.53 16 39 H 0.10 0.84 7.96 -51.93 -0.41 0.42 16 40 H 0.10 0.77 7.63 -51.93 -0.40 0.37 16 41 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.10 0.43 6.05 -51.93 -0.31 0.11 16 43 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.10 0.78 7.08 -51.93 -0.37 0.41 16 48 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.02 0.48 7.68 -51.93 -0.40 0.08 16 50 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 397.64 15.07 5.99 5.99 Total: -1.00 -34.88 397.64 -9.16 -44.04 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -8.41 Total: 0.55 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: -0.66 Total: 7.19 kcal Atomic # 7 Polarization: -55.81 SS G_CDS: -0.87 Total: -56.68 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -0.20 Total: -18.19 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.88 -9.16 -44.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691168159.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.209 kcal (2) G-P(sol) polarization free energy of solvation -34.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds