Wall clock time and date at job start Sat Apr 11 2020 05:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 120.00456 * 2 1 4 4 H 1.48496 * 109.47218 * 239.99839 * 3 2 1 5 5 H 1.48504 * 109.46785 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46751 * 120.00076 * 3 2 1 7 7 C 1.38816 * 119.99418 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99572 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00461 * 359.97438 * 7 2 1 10 10 C 1.47471 * 125.62644 * 0.03195 * 9 7 2 11 11 C 1.54906 * 104.81210 * 204.04433 * 10 9 7 12 12 C 1.55156 * 101.61451 * 323.04512 * 11 10 9 13 13 H 1.09005 * 110.72052 * 277.11432 * 12 11 10 14 14 C 1.53005 * 110.71903 * 153.84569 * 12 11 10 15 15 N 1.46500 * 109.47109 * 174.99655 * 14 12 11 16 16 C 1.34776 * 120.00180 * 179.97438 * 15 14 12 17 17 O 1.21284 * 119.99388 * 0.02562 * 16 15 14 18 18 C 1.50697 * 120.00282 * 180.02562 * 16 15 14 19 19 C 1.52997 * 109.47010 * 180.02562 * 18 16 15 20 20 C 1.50697 * 109.47010 * 180.02562 * 19 18 16 21 21 O 1.21283 * 120.00212 * 359.97438 * 20 19 18 22 22 N 1.34774 * 120.00184 * 180.02562 * 20 19 18 23 23 C 1.47155 * 120.98310 * 359.71098 * 22 20 19 24 24 C 1.53712 * 108.16008 * 129.43601 * 23 22 20 25 25 O 1.42956 * 109.14924 * 52.54150 * 24 23 22 26 26 C 1.42959 * 114.16919 * 297.28766 * 25 24 23 27 27 C 1.47161 * 120.98446 * 180.02562 * 22 20 19 28 28 C 1.47017 * 125.65385 * 180.02562 * 9 7 2 29 29 H 0.97005 * 119.99622 * 0.02562 * 1 2 3 30 30 H 1.09008 * 110.34870 * 85.22563 * 10 9 7 31 31 H 1.09001 * 110.40581 * 322.89599 * 10 9 7 32 32 H 1.09002 * 111.00655 * 204.94912 * 11 10 9 33 33 H 1.09002 * 111.00329 * 81.13838 * 11 10 9 34 34 H 1.08995 * 109.47101 * 294.99732 * 14 12 11 35 35 H 1.08998 * 109.46846 * 54.99796 * 14 12 11 36 36 H 0.96999 * 120.00061 * 0.02562 * 15 14 12 37 37 H 1.09002 * 109.46719 * 299.99812 * 18 16 15 38 38 H 1.09000 * 109.46775 * 60.00105 * 18 16 15 39 39 H 1.08995 * 109.47278 * 299.99882 * 19 18 16 40 40 H 1.09000 * 109.47283 * 60.00395 * 19 18 16 41 41 H 1.08997 * 109.68521 * 249.21804 * 23 22 20 42 42 H 1.09006 * 109.67841 * 9.76736 * 23 22 20 43 43 H 1.09003 * 109.65771 * 292.57117 * 24 23 22 44 44 H 1.09003 * 109.43885 * 172.37822 * 24 23 22 45 45 H 1.08999 * 109.51375 * 302.65945 * 26 25 24 46 46 H 1.08999 * 109.51918 * 182.50270 * 26 25 24 47 47 H 1.09002 * 109.67663 * 350.23065 * 27 22 20 48 48 H 1.09001 * 109.67955 * 110.74548 * 27 22 20 49 49 H 1.08998 * 109.88206 * 59.58041 * 28 9 7 50 50 H 1.09004 * 110.01118 * 298.49134 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6962 1.2126 7 6 2.0101 -1.2023 -0.0005 8 1 3.0901 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1422 -2.5327 -0.0007 11 6 -0.4023 -3.9325 0.6096 12 6 0.7781 -4.7524 0.0249 13 1 0.5461 -5.0976 -0.9827 14 6 1.1222 -5.9318 0.9369 15 7 2.1561 -6.7537 0.3031 16 6 2.6193 -7.8542 0.9283 17 8 2.1797 -8.1643 2.0153 18 6 3.6833 -8.6994 0.2766 19 6 4.0273 -9.8787 1.1886 20 6 5.0917 -10.7236 0.5373 21 8 5.5315 -10.4132 -0.5496 22 7 5.5542 -11.8246 1.1620 23 6 5.0397 -12.2183 2.4832 24 6 4.6364 -13.7002 2.4181 25 8 5.7342 -14.4631 1.9119 26 6 6.1181 -14.1222 0.5776 27 6 6.5936 -12.6648 0.5461 28 6 1.9315 -3.7276 -0.0005 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5277 -2.4852 -1.0192 31 1 -0.6003 -1.7591 0.6155 32 1 -1.3595 -4.3328 0.2753 33 1 -0.3537 -3.8994 1.6980 34 1 1.4905 -5.5572 1.8919 35 1 0.2297 -6.5350 1.1030 36 1 2.5079 -6.5055 -0.5661 37 1 3.3151 -9.0743 -0.6784 38 1 4.5755 -8.0958 0.1105 39 1 4.3952 -9.5042 2.1438 40 1 3.1348 -10.4823 1.3543 41 1 5.8156 -12.0788 3.2359 42 1 4.1703 -11.6107 2.7345 43 1 3.7765 -13.8176 1.7586 44 1 4.3798 -14.0506 3.4179 45 1 5.2637 -14.2411 -0.0887 46 1 6.9275 -14.7762 0.2532 47 1 6.7537 -12.3529 -0.4860 48 1 7.5233 -12.5688 1.1070 49 1 2.5571 -3.8514 0.8834 50 1 2.5304 -3.8660 -0.9007 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691168159.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:02 Heat of formation + Delta-G solvation = -118.008591 kcal Electronic energy + Delta-G solvation = -29020.494937 eV Core-core repulsion = 24854.301009 eV Total energy + Delta-G solvation = -4166.193928 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.50608 -40.72135 -39.41893 -39.15122 -36.05225 -35.84612 -34.34311 -34.01327 -32.34341 -31.60011 -29.99164 -29.08093 -27.52784 -26.52440 -25.14209 -24.55563 -22.92839 -22.15487 -21.40523 -20.89810 -20.10338 -18.99384 -18.70314 -17.65193 -17.45970 -17.27399 -17.18735 -16.70862 -16.63999 -16.40602 -16.24621 -16.02753 -15.74717 -15.52920 -14.97395 -14.83523 -14.31202 -14.28025 -14.20012 -13.70307 -13.57390 -13.52422 -13.35123 -13.11295 -13.08115 -12.81803 -12.67573 -12.64511 -12.37331 -12.19852 -12.05468 -11.87006 -11.82372 -11.76399 -11.57588 -11.37291 -11.25555 -10.90506 -10.86480 -10.73035 -10.05454 -9.66212 -8.87732 -7.77456 -5.21503 1.45984 1.48973 1.49036 1.55441 1.64864 1.73260 2.28218 2.49555 2.85828 3.31764 3.37888 3.65064 3.70628 3.78952 3.80099 3.98573 4.00196 4.02023 4.06772 4.09257 4.11694 4.21806 4.27035 4.46683 4.47320 4.61524 4.65374 4.66780 4.71878 4.74836 4.81626 4.83877 4.84502 4.91384 4.92979 4.93034 5.07387 5.14234 5.33605 5.36395 5.45331 5.50120 5.66962 5.83340 6.09343 6.20873 6.32182 6.56130 7.00895 7.11403 7.24225 7.79472 8.42815 9.24087 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026341 B = 0.001644 C = 0.001590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.718869 B =17027.006029 C =17602.779948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.068 4.068 3 Si 0.980 3.020 4 H -0.278 1.278 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.241 4.241 8 H 0.079 0.921 9 N -0.628 5.628 10 C 0.151 3.849 11 C -0.122 4.122 12 C -0.094 4.094 13 H 0.096 0.904 14 C 0.144 3.856 15 N -0.720 5.720 16 C 0.515 3.485 17 O -0.580 6.580 18 C -0.119 4.119 19 C -0.117 4.117 20 C 0.518 3.482 21 O -0.576 6.576 22 N -0.619 5.619 23 C 0.067 3.933 24 C 0.044 3.956 25 O -0.396 6.396 26 C 0.052 3.948 27 C 0.073 3.927 28 C 0.137 3.863 29 H 0.247 0.753 30 H -0.010 1.010 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.077 0.923 36 H 0.413 0.587 37 H 0.111 0.889 38 H 0.104 0.896 39 H 0.108 0.892 40 H 0.113 0.887 41 H 0.088 0.912 42 H 0.114 0.886 43 H 0.059 0.941 44 H 0.128 0.872 45 H 0.054 0.946 46 H 0.125 0.875 47 H 0.091 0.909 48 H 0.081 0.919 49 H 0.020 0.980 50 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.770 -30.676 3.106 32.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.261 4.261 3 Si 0.808 3.192 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.370 4.370 8 H 0.096 0.904 9 N -0.355 5.355 10 C 0.026 3.974 11 C -0.161 4.161 12 C -0.113 4.113 13 H 0.114 0.886 14 C 0.020 3.980 15 N -0.371 5.371 16 C 0.303 3.697 17 O -0.461 6.461 18 C -0.159 4.159 19 C -0.157 4.157 20 C 0.307 3.693 21 O -0.456 6.456 22 N -0.353 5.353 23 C -0.055 4.055 24 C -0.033 4.033 25 O -0.315 6.315 26 C -0.025 4.025 27 C -0.050 4.050 28 C 0.012 3.988 29 H 0.057 0.943 30 H 0.008 0.992 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.249 0.751 37 H 0.129 0.871 38 H 0.123 0.877 39 H 0.126 0.874 40 H 0.131 0.869 41 H 0.106 0.894 42 H 0.132 0.868 43 H 0.077 0.923 44 H 0.146 0.854 45 H 0.073 0.927 46 H 0.142 0.858 47 H 0.109 0.891 48 H 0.099 0.901 49 H 0.038 0.962 50 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 8.749 -30.656 3.410 32.062 hybrid contribution 0.408 1.692 -0.689 1.872 sum 9.157 -28.965 2.720 30.499 Atomic orbital electron populations 1.70049 1.06132 1.25060 1.58512 1.25636 0.96682 1.00976 1.02768 0.85133 0.77134 0.78815 0.78125 1.20461 1.21846 1.20421 1.19412 0.90970 0.83964 1.42673 0.90362 1.44830 1.02856 1.00973 1.86813 1.21750 0.84018 0.94985 0.96619 1.22845 0.97828 0.95423 1.00036 1.22289 0.95580 0.93427 1.00029 0.88611 1.21185 0.91063 0.90519 0.95191 1.46025 1.41185 1.26224 1.23673 1.20952 0.82802 0.80932 0.85062 1.90678 1.61017 1.71999 1.22395 1.21335 0.98081 0.96162 1.00298 1.21355 0.98250 0.95980 1.00090 1.20984 0.82767 0.80687 0.84815 1.90696 1.60993 1.71330 1.22576 1.48277 1.40437 1.25865 1.20755 1.22803 1.01816 0.97460 0.83469 1.23234 0.88614 0.89591 1.01864 1.87960 1.51987 1.61107 1.30433 1.23046 1.01183 0.94438 0.83877 1.22375 0.91004 0.91027 1.00550 1.21510 0.94823 0.84741 0.97720 0.94341 0.99223 0.91132 0.89209 0.91868 0.92881 0.90526 0.75073 0.87098 0.87744 0.87416 0.86892 0.89397 0.86834 0.92264 0.85384 0.92727 0.85763 0.89107 0.90055 0.96196 0.95558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.65 10.09 21.65 0.22 -56.43 16 2 C -0.07 -3.89 5.49 84.86 0.47 -3.42 16 3 Si 0.98 45.92 29.55 68.60 2.03 47.95 16 4 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 6 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 7 C -0.24 -13.63 10.27 84.03 0.86 -12.76 16 8 H 0.08 4.25 7.83 -2.91 -0.02 4.22 16 9 N -0.63 -32.29 3.40 -691.89 -2.35 -34.64 16 10 C 0.15 7.37 5.89 86.85 0.51 7.88 16 11 C -0.12 -4.31 6.53 31.98 0.21 -4.10 16 12 C -0.09 -2.88 2.97 -9.61 -0.03 -2.90 16 13 H 0.10 2.62 8.14 -2.38 -0.02 2.60 16 14 C 0.14 3.80 5.02 86.38 0.43 4.24 16 15 N -0.72 -15.90 5.47 -463.06 -2.53 -18.44 16 16 C 0.51 11.59 7.83 87.66 0.69 12.28 16 17 O -0.58 -16.74 15.98 -3.04 -0.05 -16.79 16 18 C -0.12 -2.02 4.99 29.85 0.15 -1.87 16 19 C -0.12 -1.76 3.36 29.85 0.10 -1.66 16 20 C 0.52 9.30 7.71 87.66 0.68 9.98 16 21 O -0.58 -14.41 15.45 -3.04 -0.05 -14.45 16 22 N -0.62 -8.60 3.01 -816.43 -2.46 -11.06 16 23 C 0.07 0.57 6.57 86.49 0.57 1.14 16 24 C 0.04 0.35 7.00 72.22 0.51 0.85 16 25 O -0.40 -4.89 10.74 -148.98 -1.60 -6.49 16 26 C 0.05 0.52 6.99 72.10 0.50 1.02 16 27 C 0.07 0.92 6.64 86.37 0.57 1.49 16 28 C 0.14 5.41 6.75 86.73 0.59 6.00 16 29 H 0.25 14.36 8.31 -92.70 -0.77 13.59 16 30 H -0.01 -0.53 8.14 -2.38 -0.02 -0.55 16 31 H 0.07 3.96 5.88 -2.39 -0.01 3.95 16 32 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 33 H 0.06 2.23 8.05 -2.39 -0.02 2.22 16 34 H 0.05 1.61 7.93 -2.39 -0.02 1.59 16 35 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.41 7.56 8.47 -92.71 -0.79 6.78 16 37 H 0.11 1.70 8.10 -2.39 -0.02 1.68 16 38 H 0.10 1.78 8.10 -2.39 -0.02 1.76 16 39 H 0.11 1.54 7.96 -2.39 -0.02 1.53 16 40 H 0.11 1.46 7.63 -2.39 -0.02 1.44 16 41 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.11 0.69 6.05 -2.38 -0.01 0.68 16 43 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 44 H 0.13 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 46 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.09 1.38 7.08 -2.39 -0.02 1.36 16 48 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.02 0.81 7.68 -2.39 -0.02 0.79 16 50 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 Total: -1.00 -76.32 397.64 0.16 -76.16 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 0.15 Total: 16.04 kcal Atomic # 6 Polarization: 11.35 SS G_CDS: 6.80 Total: 18.15 kcal Atomic # 7 Polarization: -113.45 SS G_CDS: -7.12 Total: -120.57 kcal Atomic # 8 Polarization: -36.04 SS G_CDS: -1.70 Total: -37.73 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -76.32 0.16 -76.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691168159.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.847 kcal (2) G-P(sol) polarization free energy of solvation -76.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds