Wall clock time and date at job start Sat Apr 11 2020 05:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50705 * 110.42834 * 2 1 4 4 O 1.21284 * 120.00190 * 122.29422 * 3 2 1 5 5 N 1.34774 * 119.99926 * 302.28538 * 3 2 1 6 6 C 1.46923 * 120.63176 * 354.50262 * 5 3 2 7 7 C 1.53190 * 108.77699 * 126.40883 * 6 5 3 8 8 C 1.53038 * 109.31343 * 54.63817 * 7 6 5 9 9 C 1.53051 * 109.53738 * 298.63445 * 8 7 6 10 10 H 1.08995 * 109.49431 * 301.41459 * 9 8 7 11 11 N 1.46496 * 109.49763 * 181.34442 * 9 8 7 12 12 C 1.36928 * 120.00219 * 300.06672 * 11 9 8 13 13 H 1.07994 * 120.00634 * 325.33327 * 12 11 9 14 14 C 1.38814 * 119.99710 * 145.33758 * 12 11 9 15 15 N 1.31617 * 120.00393 * 337.13609 * 14 12 11 16 16 Si 1.86809 * 119.99937 * 157.14210 * 14 12 11 17 17 H 1.48502 * 109.46943 * 59.99926 * 16 14 12 18 18 H 1.48497 * 109.47107 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47158 * 299.99963 * 16 14 12 20 20 C 1.46507 * 119.99514 * 120.06821 * 11 9 8 21 21 C 1.52993 * 109.47040 * 84.56802 * 20 11 9 22 22 O 1.42898 * 109.47524 * 65.00052 * 21 20 11 23 23 C 1.46923 * 120.63042 * 174.52320 * 5 3 2 24 24 C 1.54632 * 110.59859 * 122.61083 * 2 1 3 25 25 C 1.54481 * 101.75930 * 143.53683 * 24 2 1 26 26 N 1.46763 * 105.47561 * 334.58526 * 25 24 2 27 27 C 1.34413 * 111.30153 * 17.01624 * 26 25 24 28 28 O 1.21282 * 124.94153 * 179.55747 * 27 26 25 29 29 H 1.08997 * 109.47575 * 50.12960 * 1 2 3 30 30 H 1.09005 * 109.46575 * 170.12232 * 1 2 3 31 31 H 1.08999 * 109.47427 * 290.12201 * 1 2 3 32 32 H 1.09006 * 109.58840 * 6.62709 * 6 5 3 33 33 H 1.08995 * 109.70822 * 246.27008 * 6 5 3 34 34 H 1.09006 * 109.50112 * 294.68707 * 7 6 5 35 35 H 1.09008 * 109.50025 * 174.58692 * 7 6 5 36 36 H 1.08995 * 109.46751 * 178.61809 * 8 7 6 37 37 H 1.08997 * 109.45133 * 58.64764 * 8 7 6 38 38 H 0.97000 * 120.00623 * 179.97438 * 15 14 12 39 39 H 1.09003 * 109.46922 * 204.57210 * 20 11 9 40 40 H 1.09005 * 109.46734 * 324.56721 * 20 11 9 41 41 H 1.09002 * 109.46982 * 185.00023 * 21 20 11 42 42 H 1.09006 * 109.47098 * 304.99333 * 21 20 11 43 43 H 0.96695 * 114.00196 * 179.97438 * 22 21 20 44 44 H 1.09001 * 109.58973 * 113.80129 * 23 5 3 45 45 H 1.09001 * 109.58896 * 353.37361 * 23 5 3 46 46 H 1.08997 * 110.96793 * 261.65611 * 24 2 1 47 47 H 1.08993 * 110.96824 * 25.41864 * 24 2 1 48 48 H 1.09004 * 110.24384 * 215.58075 * 25 24 2 49 49 H 1.09002 * 110.31826 * 93.62926 * 25 24 2 50 50 H 0.97006 * 124.34451 * 196.99833 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0560 1.4123 0.0000 4 8 2.7935 1.7847 0.8879 5 7 1.7070 2.2613 -0.9867 6 6 0.9137 1.7933 -2.1314 7 6 -0.3186 2.6914 -2.2776 8 6 0.1283 4.1516 -2.3778 9 6 0.8671 4.5498 -1.0979 10 1 0.2102 4.4082 -0.2397 11 7 1.2664 5.9568 -1.1814 12 6 2.0966 6.3744 -2.1870 13 1 2.8739 5.7197 -2.5525 14 6 1.9393 7.6393 -2.7366 15 7 0.7802 8.2564 -2.6468 16 14 3.3727 8.4658 -3.6038 17 1 3.8072 7.6280 -4.7503 18 1 2.9489 9.8001 -4.0989 19 1 4.5012 8.6260 -2.6520 20 6 0.7773 6.9170 -0.1888 21 6 1.6785 6.8769 1.0468 22 8 2.9879 7.3293 0.6964 23 6 2.1129 3.6726 -0.9384 24 6 2.0740 -0.7801 1.2193 25 6 3.3233 -1.4654 0.6227 26 7 3.0583 -1.5784 -0.8164 27 6 2.0595 -0.7623 -1.1946 28 8 1.6438 -0.6525 -2.3286 29 1 -0.3634 0.6588 -0.7887 30 1 -0.3633 -1.0125 -0.1763 31 1 -0.3634 0.3535 0.9649 32 1 0.5976 0.7641 -1.9606 33 1 1.5135 1.8451 -3.0400 34 1 -0.9644 2.5674 -1.4082 35 1 -0.8651 2.4155 -3.1796 36 1 -0.7452 4.7908 -2.5065 37 1 0.7938 4.2697 -3.2329 38 1 0.6704 9.1405 -3.0306 39 1 0.7908 7.9198 -0.6161 40 1 -0.2422 6.6573 0.0964 41 1 1.2649 7.5251 1.8194 42 1 1.7354 5.8550 1.4220 43 1 3.6139 7.3307 1.4333 44 1 2.8118 3.8798 -1.7487 45 1 2.5880 3.8836 0.0196 46 1 2.3495 -0.1006 2.0258 47 1 1.3508 -1.5191 1.5638 48 1 3.4562 -2.4547 1.0606 49 1 4.2093 -0.8546 0.7963 50 1 3.5421 -2.1664 -1.4175 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692242140.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:27 Heat of formation + Delta-G solvation = -71.922371 kcal Electronic energy + Delta-G solvation = -32492.891749 eV Core-core repulsion = 28328.696270 eV Total energy + Delta-G solvation = -4164.195479 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.60948 -39.11162 -37.63333 -36.60546 -35.99907 -34.66075 -33.43164 -32.00951 -31.19613 -29.62945 -28.89523 -27.19905 -26.08507 -24.75696 -24.09753 -22.59458 -21.96219 -21.56052 -20.47821 -19.55088 -18.25205 -17.62450 -17.50190 -16.52467 -16.38324 -16.02797 -15.45319 -15.05982 -14.89977 -14.54857 -14.37576 -14.25656 -13.89695 -13.78813 -13.49016 -13.44960 -13.05483 -12.91169 -12.71165 -12.48715 -12.43806 -12.30866 -12.23358 -11.86363 -11.61996 -11.26976 -11.22219 -10.94072 -10.90324 -10.69335 -10.59899 -10.35877 -10.23713 -9.86770 -9.81552 -9.64892 -9.48767 -9.40655 -9.38186 -9.02703 -8.41774 -8.16908 -6.51206 -5.68577 -3.18970 2.17551 2.66793 3.06726 3.28686 3.48543 3.53192 3.60612 3.97676 4.13795 4.39820 4.60922 4.66819 4.76476 5.04647 5.19291 5.22244 5.31855 5.39344 5.43935 5.45239 5.47017 5.60805 5.62565 5.67265 5.78439 5.82426 5.91709 5.97810 6.11463 6.14283 6.20969 6.34115 6.36655 6.43086 6.49948 6.56414 6.64177 6.68687 6.75736 6.85040 6.91144 7.10826 7.27256 7.71580 7.72362 7.92137 7.92568 8.30727 8.50880 8.67124 9.27749 9.92908 10.46288 11.34689 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016403 B = 0.003608 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.623258 B = 7758.880756 C = 8128.787296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.118 4.118 3 C 0.530 3.470 4 O -0.541 6.541 5 N -0.591 5.591 6 C 0.075 3.925 7 C -0.135 4.135 8 C -0.121 4.121 9 C 0.168 3.832 10 H 0.048 0.952 11 N -0.568 5.568 12 C -0.237 4.237 13 H 0.057 0.943 14 C 0.017 3.983 15 N -0.893 5.893 16 Si 0.895 3.105 17 H -0.286 1.286 18 H -0.294 1.294 19 H -0.282 1.282 20 C 0.144 3.856 21 C 0.058 3.942 22 O -0.544 6.544 23 C 0.102 3.898 24 C -0.117 4.117 25 C 0.099 3.901 26 N -0.727 5.727 27 C 0.531 3.469 28 O -0.511 6.511 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.123 0.877 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.252 0.748 39 H 0.106 0.894 40 H 0.035 0.965 41 H 0.019 0.981 42 H 0.022 0.978 43 H 0.350 0.650 44 H 0.071 0.929 45 H 0.082 0.918 46 H 0.110 0.890 47 H 0.089 0.911 48 H 0.083 0.917 49 H 0.078 0.922 50 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.741 -19.497 8.444 21.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.125 4.125 3 C 0.315 3.685 4 O -0.420 6.420 5 N -0.322 5.322 6 C -0.047 4.047 7 C -0.174 4.174 8 C -0.161 4.161 9 C 0.060 3.940 10 H 0.066 0.934 11 N -0.287 5.287 12 C -0.367 4.367 13 H 0.074 0.926 14 C -0.182 4.182 15 N -0.536 5.536 16 Si 0.725 3.275 17 H -0.212 1.212 18 H -0.220 1.220 19 H -0.208 1.208 20 C 0.018 3.982 21 C -0.022 4.022 22 O -0.345 6.345 23 C -0.021 4.021 24 C -0.154 4.154 25 C -0.025 4.025 26 N -0.382 5.382 27 C 0.316 3.684 28 O -0.387 6.387 29 H 0.107 0.893 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.140 0.860 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.062 0.938 39 H 0.124 0.876 40 H 0.054 0.946 41 H 0.037 0.963 42 H 0.040 0.960 43 H 0.193 0.807 44 H 0.089 0.911 45 H 0.100 0.900 46 H 0.128 0.872 47 H 0.107 0.893 48 H 0.101 0.899 49 H 0.096 0.904 50 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -0.982 -18.890 7.695 20.421 hybrid contribution 1.294 0.196 -0.111 1.313 sum 0.312 -18.694 7.584 20.176 Atomic orbital electron populations 1.22071 0.89802 1.03875 1.04567 1.21614 0.99545 0.94731 0.96642 1.19595 0.81076 0.85684 0.82162 1.90664 1.36685 1.77332 1.37275 1.48222 1.52258 1.10532 1.21170 1.22760 0.92638 1.00745 0.88520 1.22025 0.96877 0.97151 1.01352 1.21926 1.00908 0.92801 1.00441 1.20594 0.92106 0.86027 0.95315 0.93377 1.43669 1.55436 1.01372 1.28239 1.18724 1.06965 0.99542 1.11448 0.92581 1.24931 0.95657 0.99655 0.97958 1.69984 1.21299 1.14896 1.47452 0.86496 0.83379 0.78525 0.79058 1.21195 1.21973 1.20812 1.21045 0.91229 0.99119 0.86856 1.23091 0.85018 0.95141 0.98943 1.86839 1.21139 1.88971 1.37544 1.22376 0.99443 0.77158 1.03126 1.22689 0.96459 0.99261 0.97039 1.22149 0.99074 1.01567 0.79699 1.46129 1.36995 1.43913 1.11160 1.20356 0.79628 0.79472 0.88971 1.90709 1.60997 1.65521 1.21427 0.89287 0.91208 0.90727 0.86000 0.91547 0.92412 0.91378 0.91902 0.91353 0.93792 0.87597 0.94627 0.96259 0.95960 0.80739 0.91092 0.89964 0.87212 0.89281 0.89883 0.90373 0.74838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 8.07 37.16 0.30 -1.16 16 2 C -0.12 -1.39 0.56 -155.67 -0.09 -1.48 16 3 C 0.53 8.45 6.55 -10.98 -0.07 8.38 16 4 O -0.54 -9.97 14.91 5.55 0.08 -9.89 16 5 N -0.59 -10.05 2.97 -172.77 -0.51 -10.57 16 6 C 0.08 1.17 4.08 -3.71 -0.02 1.15 16 7 C -0.14 -2.07 5.75 -26.61 -0.15 -2.22 16 8 C -0.12 -2.37 5.11 -26.69 -0.14 -2.50 16 9 C 0.17 3.48 2.78 -67.80 -0.19 3.30 16 10 H 0.05 0.97 7.87 -51.93 -0.41 0.56 16 11 N -0.57 -13.79 2.35 -165.52 -0.39 -14.18 16 12 C -0.24 -6.42 8.04 -15.06 -0.12 -6.54 16 13 H 0.06 1.55 6.74 -52.49 -0.35 1.20 16 14 C 0.02 0.48 4.89 -17.43 -0.09 0.39 16 15 N -0.89 -25.70 11.44 55.49 0.63 -25.06 16 16 Si 0.90 22.55 29.61 -169.99 -5.03 17.51 16 17 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 18 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 19 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 20 C 0.14 3.39 5.58 -4.04 -0.02 3.37 16 21 C 0.06 1.19 7.39 37.15 0.27 1.47 16 22 O -0.54 -11.86 13.39 -35.23 -0.47 -12.33 16 23 C 0.10 2.05 5.75 -3.71 -0.02 2.02 16 24 C -0.12 -1.01 6.03 -25.10 -0.15 -1.16 16 25 C 0.10 0.75 7.78 -3.12 -0.02 0.73 16 26 N -0.73 -6.69 6.24 -59.20 -0.37 -7.06 16 27 C 0.53 6.57 6.80 -10.86 -0.07 6.49 16 28 O -0.51 -7.61 14.38 5.56 0.08 -7.53 16 29 H 0.09 1.01 3.97 -51.93 -0.21 0.80 16 30 H 0.07 0.58 8.10 -51.93 -0.42 0.15 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.12 1.74 2.05 -51.97 -0.11 1.63 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.06 0.82 7.47 -51.93 -0.39 0.43 16 35 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 36 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.07 1.48 7.70 -51.93 -0.40 1.08 16 38 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.11 2.87 5.43 -51.93 -0.28 2.59 16 40 H 0.04 0.78 8.04 -51.93 -0.42 0.37 16 41 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.35 5.71 9.12 45.56 0.42 6.12 16 44 H 0.07 1.56 6.79 -51.93 -0.35 1.21 16 45 H 0.08 1.78 7.04 -51.93 -0.37 1.41 16 46 H 0.11 1.08 6.96 -51.93 -0.36 0.71 16 47 H 0.09 0.54 7.92 -51.93 -0.41 0.13 16 48 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.41 2.99 8.96 -40.82 -0.37 2.63 16 LS Contribution 379.36 15.07 5.72 5.72 Total: -1.00 -33.58 379.36 -7.78 -41.36 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -6.94 Total: 9.78 kcal Atomic # 6 Polarization: 12.81 SS G_CDS: -0.58 Total: 12.23 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: -0.64 Total: -56.86 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: -0.31 Total: -29.74 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.03 Total: 17.51 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.58 -7.78 -41.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692242140.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.558 kcal (2) G-P(sol) polarization free energy of solvation -33.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds