Wall clock time and date at job start Sat Apr 11 2020 05:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00105 * 2 1 4 4 H 1.48494 * 109.47425 * 269.99725 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99581 * 3 2 1 6 6 H 1.48505 * 109.47256 * 149.99586 * 3 2 1 7 7 C 1.38950 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00299 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00030 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99773 * 180.27703 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.71934 * 10 9 7 12 12 C 1.50698 * 119.99538 * 179.72591 * 10 9 7 13 13 N 1.46899 * 109.46987 * 179.97438 * 12 10 9 14 14 C 1.46896 * 111.00338 * 179.97438 * 13 12 10 15 15 C 1.53784 * 113.61477 * 252.49734 * 14 13 12 16 16 C 1.53783 * 87.08153 * 220.01383 * 15 14 13 17 17 C 1.52992 * 113.69275 * 270.87291 * 16 15 14 18 18 N 1.46496 * 109.47377 * 272.53482 * 17 16 15 19 19 C 1.34776 * 120.00344 * 180.02562 * 18 17 16 20 20 O 1.21273 * 120.00028 * 359.97438 * 19 18 17 21 21 C 1.50704 * 119.99662 * 179.97438 * 19 18 17 22 22 C 1.53005 * 109.46875 * 180.02562 * 21 19 18 23 23 H 1.09001 * 109.82383 * 305.69925 * 22 21 19 24 24 C 1.54375 * 109.83105 * 184.81431 * 22 21 19 25 25 C 1.55450 * 102.18907 * 219.17908 * 24 22 21 26 26 C 1.54947 * 100.98487 * 34.03896 * 25 24 22 27 27 O 1.43236 * 109.83277 * 66.58709 * 22 21 19 28 28 C 1.53779 * 113.61861 * 154.99619 * 14 13 12 29 29 H 0.96999 * 119.99863 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99681 * 359.97438 * 9 7 2 31 31 H 1.09003 * 109.47112 * 299.99065 * 12 10 9 32 32 H 1.08993 * 109.47916 * 59.99687 * 12 10 9 33 33 H 1.00900 * 111.00047 * 303.95165 * 13 12 10 34 34 H 1.09004 * 112.85111 * 23.79764 * 14 13 12 35 35 H 1.08998 * 113.61223 * 334.55683 * 15 14 13 36 36 H 1.08998 * 113.61362 * 105.47093 * 15 14 13 37 37 H 1.09002 * 113.61695 * 139.97753 * 16 15 14 38 38 H 1.08996 * 109.47432 * 32.53669 * 17 16 15 39 39 H 1.08999 * 109.47548 * 152.53351 * 17 16 15 40 40 H 0.97010 * 119.99722 * 359.97438 * 18 17 16 41 41 H 1.09002 * 109.47232 * 299.99595 * 21 19 18 42 42 H 1.09000 * 109.47290 * 60.00255 * 21 19 18 43 43 H 1.09006 * 110.85171 * 337.31781 * 24 22 21 44 44 H 1.09003 * 110.84757 * 100.93786 * 24 22 21 45 45 H 1.09001 * 111.06087 * 276.12515 * 25 24 22 46 46 H 1.09002 * 111.18885 * 152.00805 * 25 24 22 47 47 H 1.09005 * 110.31255 * 204.69223 * 26 25 24 48 48 H 1.09000 * 110.39673 * 82.56681 * 26 25 24 49 49 H 1.08997 * 113.61520 * 254.52965 * 28 14 13 50 50 H 1.09001 * 113.61248 * 25.43549 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4456 2.6527 0.6999 6 1 3.5457 1.4401 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0067 11 8 3.2102 -3.5580 0.0071 12 6 1.2437 -4.8629 0.0129 13 7 2.1982 -5.9795 0.0184 14 6 1.4980 -7.2708 0.0252 15 6 1.5772 -8.0075 1.3727 16 6 1.7625 -9.3026 0.5645 17 6 0.4471 -9.9952 0.2031 18 7 0.0550 -10.8961 1.2898 19 6 -1.0791 -11.6176 1.1909 20 8 -1.7752 -11.5208 0.2026 21 6 -1.4820 -12.5448 2.3086 22 6 -2.7970 -13.2384 1.9468 23 1 -3.5522 -12.4926 1.6986 24 6 -3.2801 -14.0975 3.1349 25 6 -3.8356 -15.3618 2.4212 26 6 -2.8670 -15.4705 1.2166 27 8 -2.5937 -14.1139 0.8316 28 6 2.3266 -8.4241 -0.5648 29 1 -0.4850 0.8400 -0.0004 30 1 0.3533 -2.3906 0.0005 31 1 0.6167 -4.9162 0.9030 32 1 0.6174 -4.9252 -0.8769 33 1 2.8331 -5.9162 -0.7633 34 1 0.4881 -7.2068 -0.3802 35 1 2.4490 -7.7360 1.9681 36 1 0.6483 -7.9774 1.9421 37 1 2.4958 -9.9847 0.9947 38 1 -0.3297 -9.2452 0.0548 39 1 0.5784 -10.5686 -0.7146 40 1 0.6120 -10.9739 2.0802 41 1 -0.7049 -13.2946 2.4567 42 1 -1.6137 -11.9717 3.2264 43 1 -2.4483 -14.3563 3.7902 44 1 -4.0671 -13.5859 3.6889 45 1 -4.8613 -15.2045 2.0875 46 1 -3.7643 -16.2399 3.0631 47 1 -3.3423 -16.0082 0.3962 48 1 -1.9461 -15.9723 1.5137 49 1 2.0026 -8.7303 -1.5594 50 1 3.4032 -8.2665 -0.4989 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692333921.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:44 Heat of formation + Delta-G solvation = -106.294430 kcal Electronic energy + Delta-G solvation = -28279.883630 eV Core-core repulsion = 24114.197666 eV Total energy + Delta-G solvation = -4165.685963 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.48281 -39.72968 -38.84601 -38.02050 -34.96650 -34.00864 -33.20909 -32.75572 -32.05087 -31.18053 -28.47639 -26.97849 -25.97079 -25.61479 -24.04816 -22.50817 -22.28990 -21.71542 -20.47193 -19.36962 -18.82825 -17.85130 -17.52465 -17.01917 -16.76574 -16.32448 -15.95834 -15.66553 -15.26704 -15.15323 -14.73900 -14.64579 -14.34617 -14.09666 -13.97958 -13.78059 -13.44142 -13.38549 -13.16480 -12.76722 -12.39510 -12.34830 -12.19986 -12.13001 -11.76484 -11.61142 -11.58687 -11.53526 -11.49249 -11.32866 -11.04001 -10.94560 -10.54235 -10.38172 -10.31768 -10.19292 -9.98046 -9.87178 -9.49172 -9.25350 -8.41515 -8.03775 -7.93688 -6.39861 -3.80722 2.48471 2.90011 3.19136 3.27610 3.33699 3.44958 3.93362 3.98403 4.13545 4.20495 4.34792 4.38182 4.42488 4.48652 4.57846 4.63252 4.71006 4.74749 4.77072 4.91818 5.02874 5.14370 5.17430 5.22423 5.23535 5.27910 5.28497 5.37288 5.38378 5.50005 5.53764 5.61107 5.72366 5.76463 5.80409 5.86029 5.97619 5.98272 6.12814 6.21977 6.29544 6.36480 6.70940 7.27159 7.32348 7.56848 7.70764 8.05442 8.08419 8.63379 9.19713 9.56560 10.08074 10.77908 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024178 B = 0.001457 C = 0.001405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.810768 B =19207.687455 C =19929.528628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.441 3.559 11 O -0.584 6.584 12 C 0.049 3.951 13 N -0.656 5.656 14 C 0.058 3.942 15 C -0.120 4.120 16 C -0.127 4.127 17 C 0.137 3.863 18 N -0.732 5.732 19 C 0.512 3.488 20 O -0.527 6.527 21 C -0.153 4.153 22 C 0.096 3.904 23 H 0.088 0.912 24 C -0.153 4.153 25 C -0.156 4.156 26 C 0.045 3.955 27 O -0.362 6.362 28 C -0.131 4.131 29 H 0.271 0.729 30 H 0.392 0.608 31 H 0.085 0.915 32 H 0.043 0.957 33 H 0.350 0.650 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.063 0.937 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.400 0.600 41 H 0.097 0.903 42 H 0.103 0.897 43 H 0.079 0.921 44 H 0.085 0.915 45 H 0.079 0.921 46 H 0.082 0.918 47 H 0.084 0.916 48 H 0.057 0.943 49 H 0.068 0.932 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.372 -31.342 6.945 32.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.226 3.774 11 O -0.468 6.468 12 C -0.083 4.083 13 N -0.289 5.289 14 C -0.053 4.053 15 C -0.159 4.159 16 C -0.146 4.146 17 C 0.014 3.986 18 N -0.385 5.385 19 C 0.298 3.702 20 O -0.402 6.402 21 C -0.194 4.194 22 C 0.038 3.962 23 H 0.106 0.894 24 C -0.190 4.190 25 C -0.194 4.194 26 C -0.032 4.032 27 O -0.281 6.281 28 C -0.170 4.170 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.103 0.897 32 H 0.061 0.939 33 H 0.170 0.830 34 H 0.089 0.911 35 H 0.111 0.889 36 H 0.082 0.918 37 H 0.102 0.898 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.234 0.766 41 H 0.115 0.885 42 H 0.122 0.878 43 H 0.098 0.902 44 H 0.103 0.897 45 H 0.098 0.902 46 H 0.101 0.899 47 H 0.102 0.898 48 H 0.076 0.924 49 H 0.087 0.913 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.044 -30.993 6.676 32.275 hybrid contribution -0.325 0.775 -0.227 0.870 sum -6.370 -30.218 6.449 31.549 Atomic orbital electron populations 1.69616 1.05939 1.28129 1.50644 1.25262 0.95630 0.99712 0.97345 0.85854 0.79240 0.80810 0.78359 1.20437 1.20935 1.19409 1.19711 0.93375 0.82271 1.47575 0.87932 1.41875 1.09205 1.04623 1.64385 1.19841 0.88387 0.84761 0.84372 1.90516 1.13778 1.87104 1.55441 1.21733 0.94458 0.91065 1.01072 1.60233 1.18358 0.99544 1.50745 1.23091 0.96670 0.88501 0.97035 1.23131 1.02573 0.93466 0.96705 1.22432 0.96402 0.96507 0.99263 1.21162 0.95321 0.92323 0.89790 1.46021 1.25291 1.44747 1.22394 1.20513 0.80707 0.80510 0.88467 1.90745 1.52233 1.65310 1.31957 1.22146 0.99831 0.99189 0.98204 1.22474 0.95147 0.92718 0.85904 0.89373 1.23238 1.01688 0.96223 0.97882 1.23289 1.00324 0.98350 0.97448 1.23411 0.97601 0.85120 0.97064 1.88621 1.89999 1.15747 1.33720 1.23198 1.00970 0.95291 0.97540 0.91893 0.77461 0.89717 0.93899 0.82965 0.91113 0.88853 0.91800 0.89776 0.91208 0.91371 0.76645 0.88511 0.87843 0.90245 0.89672 0.90245 0.89916 0.89793 0.92436 0.91280 0.88700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.81 13.05 55.50 0.72 -24.08 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.23 29.55 -169.99 -5.02 16.21 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.30 -8.47 9.68 -14.93 -0.14 -8.62 16 8 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 9 N -0.56 -14.54 5.29 -10.96 -0.06 -14.60 16 10 C 0.44 10.59 7.82 -10.99 -0.09 10.50 16 11 O -0.58 -16.05 15.78 5.55 0.09 -15.97 16 12 C 0.05 0.89 6.01 -4.98 -0.03 0.86 16 13 N -0.66 -10.61 6.18 -107.13 -0.66 -11.28 16 14 C 0.06 0.70 3.79 -66.90 -0.25 0.45 16 15 C -0.12 -1.27 7.42 -25.92 -0.19 -1.47 16 16 C -0.13 -1.08 3.94 -89.81 -0.35 -1.44 16 17 C 0.14 1.29 5.35 -4.05 -0.02 1.27 16 18 N -0.73 -5.96 5.56 -60.30 -0.34 -6.30 16 19 C 0.51 5.20 7.73 -10.98 -0.08 5.12 16 20 O -0.53 -7.83 15.49 -6.67 -0.10 -7.94 16 21 C -0.15 -0.98 5.27 -27.88 -0.15 -1.13 16 22 C 0.10 0.74 3.04 -26.01 -0.08 0.66 16 23 H 0.09 0.81 7.94 -51.93 -0.41 0.40 16 24 C -0.15 -0.70 6.56 -24.71 -0.16 -0.86 16 25 C -0.16 -0.71 7.16 -24.40 -0.17 -0.89 16 26 C 0.04 0.29 7.78 38.19 0.30 0.59 16 27 O -0.36 -3.74 10.37 -47.46 -0.49 -4.24 16 28 C -0.13 -1.31 7.24 -25.92 -0.19 -1.49 16 29 H 0.27 7.05 8.31 -40.82 -0.34 6.72 16 30 H 0.39 9.68 7.90 -40.82 -0.32 9.36 16 31 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.04 0.71 8.13 -51.93 -0.42 0.29 16 33 H 0.35 5.84 8.25 -39.29 -0.32 5.51 16 34 H 0.07 0.87 7.45 -51.93 -0.39 0.48 16 35 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.76 7.40 -51.93 -0.38 0.38 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.40 2.14 8.47 -40.82 -0.35 1.79 16 41 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.08 0.26 7.85 -51.93 -0.41 -0.15 16 44 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 46 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 47 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 49 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 50 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 409.63 15.07 6.17 6.17 Total: -1.00 -35.41 409.63 -9.84 -45.25 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: -8.43 Total: 12.69 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -1.72 Total: 4.07 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: -0.33 Total: -56.25 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -0.51 Total: -28.14 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.41 -9.84 -45.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692333921.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.048 kcal (2) G-P(sol) polarization free energy of solvation -35.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds